2021 journal article
Identification of SNP markers associated with soybean fatty acids contents by genome-wide association analyses
MOLECULAR BREEDING, 41(4).
author keywords: Fatty acids; Genome-wide association study; Quantitative trait loci; Soybean; SoySNP50K
TL;DR:
This study measured soybean FAs profiles of 621 soybean accessions grown in five different environments and identified 43 genomic regions significantly associated with a fatty acid at a genome wide significance threshold of 5%.
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13. Climate Action
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Added: April 12, 2021
Composition of fatty acids (FAs) in soybean seed is important for the quality and uses of soybean oil. Using gas chromatography, we have measured soybean FAs profiles of 621 soybean accessions (maturity groups I through IV) grown in five different environments; Columbus, OH (2015), Wooster, OH (2014 and 2015), Plymouth, NC (2015), and Urbana, IL (2015). Using publicly available SoySNP50K genotypic data and the FA profiles from this study, a genome-wide association analysis was completed with a compressed mixed linear model to identify 43 genomic regions significantly associated with a fatty acid at a genome wide significance threshold of 5%. Among these regions, one and three novel genomic regions associated with palmitic acid and stearic acid, respectively, were identified across all five environments. Additionally, nine novel environment-specific FA-related genomic regions were discovered providing new insights into the genetics of soybean FAs. Previously reported FA-related loci, such as FATB1a, SACPD-C, and KASIII, were also confirmed in this study. Our results will be useful for future functional studies and marker-assisted breeding for soybean FAs.The online version contains supplementary material available at 10.1007/s11032-021-01216-1.