@article{liu_gumpertz_hu_ristaino_2008, title={Effect of prior tillage and soil fertility amendments on dispersal of Phytophthora capsici and infection of pepper}, volume={120}, ISSN={["1573-8469"]}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-38649084121&partnerID=MN8TOARS}, DOI={10.1007/s10658-007-9216-7}, number={3}, journal={EUROPEAN JOURNAL OF PLANT PATHOLOGY}, author={Liu, Bo and Gumpertz, Marcia L. and Hu, Shuijin and Ristaino, Jean Beagle}, year={2008}, month={Mar}, pages={273–287} } @inbook{warren_liu_2002, title={Combinatorial use of short probes for differential gene expression profiling}, volume={2452}, ISBN={3540425160}, booktitle={Algorithms in bioinformatics: First International Workshop, WABI 2001, Aarhus, Denmark, August 28-31, 2001 proceedings}, publisher={Berlin; New York: Springer}, author={Warren, L. L. and Liu, B. H.}, editor={O. Gascuel and Moret, B.M.E.Editors}, year={2002}, pages={477–490} } @article{remington_whetten_liu_dm o'malley_1999, title={Construction of an AFLP genetic map with nearly complete genome coverage in Pinus taeda}, volume={98}, ISSN={["0040-5752"]}, DOI={10.1007/s001220051194}, abstractNote={De novo construction of complete genetic linkage maps requires large mapping populations, large numbers of genetic markers, and efficient algorithms for ordering markers and evaluating order confidence. We constructed a complete genetic map of an individual loblolly pine (Pinus taeda L.) using amplified fragment length polymorphism (AFLP) markers segregating in haploid megagametophytes and PGRI mapping software. We generated 521 polymorphic fragments from 21 AFLP primer pairs. A total of 508 fragments mapped to 12 linkage groups, which is equal to the Pinus haploid chromosome number. Bootstrap locus order matrices and recombination matrices generated by PGRI were used to select 184 framework markers that could be ordered confidently. Order support was also evaluated using log likelihood criteria in MAPMAKER. Optimal marker orders from PGRI and MAPMAKER were identical, but the implied reliability of orders differed greatly. The framework map provides nearly complete coverage of the genome, estimated at approximately 1700 cM in length using a modified estimator. This map should provide a useful framework for merging existing loblolly pine maps and adding multiallelic markers as they become available. Map coverage with dominant markers in both linkage phases will make the map useful for subsequent quantitative trait locus mapping in families derived by self-pollination.}, number={8}, journal={THEORETICAL AND APPLIED GENETICS}, author={Remington, DL and Whetten, RW and Liu, BH and DM O'Malley}, year={1999}, month={Jun}, pages={1279–1292} } @article{marques_vasquez-kool_carocha_ferreira_dm o'malley_liu_sederoff_1999, title={Genetic dissection of vegetative propagation traits in Eucalyptus tereticornis and E-globulus}, volume={99}, ISSN={["1432-2242"]}, DOI={10.1007/s001220051400}, number={6}, journal={THEORETICAL AND APPLIED GENETICS}, author={Marques, CM and Vasquez-Kool, J and Carocha, VJ and Ferreira, JG and DM O'Malley and Liu, BH and Sederoff, R}, year={1999}, month={Oct}, pages={936–946} } @article{zhu_briceno_dovel_hayes_liu_liu_ullrich_1999, title={Molecular breeding for grain yield in barley: an evaluation of QTL effects in a spring barley cross}, volume={98}, ISSN={["1432-2242"]}, DOI={10.1007/s001220051134}, number={5}, journal={THEORETICAL AND APPLIED GENETICS}, author={Zhu, H and Briceno, G and Dovel, R and Hayes, PM and Liu, BH and Liu, CT and Ullrich, SE}, year={1999}, month={Apr}, pages={772–779} } @article{marques_araujo_ferreira_whetten_dm o'malley_liu_sederoff_1998, title={AFLP genetic maps of Eucalyptus globulus and E-tereticornis}, volume={96}, ISSN={["1432-2242"]}, DOI={10.1007/s001220050795}, number={6-7}, journal={THEORETICAL AND APPLIED GENETICS}, author={Marques, CM and Araujo, JA and Ferreira, JG and Whetten, R and DM O'Malley and Liu, BH and Sederoff, R}, year={1998}, month={May}, pages={727–737} } @book{liu_1998, title={Statistical genomics: Linkage, mapping and QTL analysis}, ISBN={0849331668}, publisher={Boca Raton, FL: CRC Press}, author={Liu, B.-H.}, year={1998} } @article{liu_brewer_flaherty_payne_bhatnagar_chu_1997, title={Immunochemical identification of AFLR, a regulatory protein, involved in aflatoxin biosynthesis}, volume={9}, ISSN={["1465-3443"]}, DOI={10.1080/09540109709354959}, abstractNote={Polyclonal antibodies against AFLR, the aflR gene product of Aspergillus flavus and A. parasiticus, were generated by immunizing a rabbit with the Escherichia coli‐expressed recombinant AFLR protein of A. flavus. Immunoblot analysis revealed that the antibodies not only reacted with the recombinant AFLR protein of A. flavus or A. parasiticus but also with native 47‐kDa AFLR in A. flavus and A. parasiticus. Immunoblot analysis revealed that accumulation of the 47‐kDa AFLR in cultures of A. flavus and A. parasiticus correlated well with the production of aflatoxin under various culture conditions that regulate aflatoxin formation. Neither AFLR nor aflatoxin was found when A. parasiticus NRRL 2999 was grown in peptone mineral salts (PMS) medium; however, both were detected after the culture was transferred to glucose mineral salts (GMS) medium. The AFLR protein was absent in the non‐aflatoxigenic Penicillium and Fusarium species grown in GMS medium. The data indicate that the antibodies obtained in the prese...}, number={4}, journal={FOOD AND AGRICULTURAL IMMUNOLOGY}, author={Liu, BH and Brewer, JF and Flaherty, JE and Payne, G and Bhatnagar, D and Chu, FS}, year={1997}, month={Dec}, pages={289–298} } @inproceedings{o'malley_grattapaglia_chaparro_wilcox_amerson_liu_whetten_mckeand_kuhlman_mccord_et al._1996, title={Molecular markers, forest genetics, and tree breeding}, DOI={10.1007/978-1-4899-0280-1_7}, abstractNote={Several years ago, Strauss et al. (1992) thoughtfully evaluated the application of molecular markers in forest tree breeding for marker aided selection. The purpose of their paper was to emphasize the limitations and shortcomings of marker-aided selection particularly in conifers. They argued that studies of quantitative trait loci identified in agronomic crops, which have significant utility (e.g. Stuber, 1992; Stuber et al., 1992), are of little relevance to assessing the potential for marker aided selection in populations of forest trees, and that the near term usefulness of molecular markers for forest tree breeding will be limited. The major barriers to application included cost, the lack of association of markers with traits across breeding populations due to linkage equilibrium, variation in expression of loci affecting quantitative traits due to differences in genetic background, genotype environment interactions, and stability of marker-trait associations over multiple generations. In addition, Strauss et al. (1992) noted that marker-aided selection would be most useful for within family selection, where the economic values of the traits are high, the trait heritabilities are low, and where markers are able to explain much of the genetic variance. However, they argued that important traits in forest trees such as wood volume, are likely to be controlled by large numbers of genes with small effects, and therefore, are unlikely to have useful marker trait associations.}, booktitle={Genomes of Plants and Animals: 21 Stadler Genetics Symposium}, publisher={Plenum Press, NY}, author={O'Malley, D. M. and Grattapaglia, D. and Chaparro, J. X. and Wilcox, P. L. and Amerson, H. V. and Liu, B-H and Whetten, R. and McKeand, Steven and Kuhlman, E. G. and McCord, S. and et al.}, editor={Gustafson, J. P. and Flavell, R. B.Editors}, year={1996}, pages={87–102} } @inproceedings{grattapaglia_chaparro_wilcox_mccord_crane_amerson_werner_liu_o'malley_whetten_et al._1993, title={Application of genetic markers to tree breeding}, booktitle={Proceedings of the 22nd Southern Forest Tree Improvement Conference}, author={Grattapaglia, D. and Chaparro, J. and Wilcox, P. and McCord, S. and Crane, B. and Amerson, H. and Werner, D. and Liu, B. H. and O'Malley, D. and Whetten, R. and et al.}, year={1993}, pages={452–463} }