Works (19)
Updated: July 5th, 2023 16:04
2014 journal article
Vibrational sum-frequency-generation (SFG) spectroscopy study of the structural assembly of cellulose microfibrils in reaction woods
CELLULOSE, 21(4), 2219–2231.
author keywords: Reaction wood; Tension wood; Compression wood; Cellulose microfibril assembly; Sum; frequency; generation spectroscopy; X-ray; diffraction
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa
Planta, 238(3), 487–497.
Contributors: R. Shi n, C. Shuford n, J. Wang n , n, Z. Yang n, H. Chen n, S. Tunlaya-Anukit n, Q. Li n
MeSH headings : Gene Expression Regulation, Plant / physiology; Mass Spectrometry; Phenylalanine Ammonia-Lyase / metabolism; Populus / enzymology; Populus / metabolism
TL;DR:
A greater functional significance of subgroup A PtrPALs for stem wood formation is indicated, and the role of gene post-transcriptional regulation is highlighted.
(via Semantic Scholar)
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2012 journal article
Comprehensive Quantification of Monolignol-Pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry
Journal of Proteome Research, 11(6), 3390–3404.
Contributors: C. Shuford n, Q. Li n, n, H. Chen n, J. Wang n , R. Shi n, R. Sederoff n, V. Chiang n, D. Muddiman n
author keywords: quantification; isotope dilution mass spectrometry; selected reaction monitoring; filter-aided sample preparation; monolignol biosynthesis
MeSH headings : Amino Acid Sequence; Biosynthetic Pathways; Isotope Labeling; Molecular Sequence Data; Plant Proteins / chemistry; Plant Proteins / metabolism; Populus / enzymology; Proteome / chemistry; Proteome / metabolism; Reference Standards; Spectrometry, Mass, Electrospray Ionization / standards; Xylem / enzymology
TL;DR:
This represents the most comprehensive assay for quantification of proteins regulating monolignol biosynthesis and will lead to a better understanding of lignin formation at a systems level.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2012 journal article
Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis
PLANTA, 236(3), 795–808.
Contributors: J. Wang n , C. Shuford n, Q. Li n, J. Song n, Y. Lin n, n, H. Chen n, C. Williams n
author keywords: Lignin; Syringyl lignin; Angiosperm; Kinetics; Subcellular localization
MeSH headings : Cloning, Molecular; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Hydroxylation; Kinetics; Lignin / analysis; Lignin / biosynthesis; Mixed Function Oxygenases / metabolism; Plants, Genetically Modified; Populus / metabolism; Xylem / enzymology; Yeasts / metabolism
TL;DR:
The combination of genetic analysis, absolute protein quantitation-based enzyme kinetics, homologous CPR specificity, SNP characterization, and ER localization provides a more rigorous basis for a comprehensive systems understanding of 5-hydroxylation in lignin biosynthesis.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2012 journal article
MicroRNAs in trees
PLANT MOLECULAR BIOLOGY, 80(1), 37–53.
author keywords: MicroRNA; Woody plant; Gene regulation; Plant development; Plant stress response; Artificial microRNA
MeSH headings : Gene Expression Regulation, Plant; MicroRNAs / genetics; MicroRNAs / metabolism; Models, Genetic; Phylogeny; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; RNA, Messenger / genetics; RNA, Messenger / metabolism; RNA, Plant / genetics; RNA, Plant / metabolism; Trees / classification; Trees / genetics; Trees / metabolism
TL;DR:
The purpose of this review is to summarize the current status of information on mi RNAs in trees and to guide future studies on the role of miRNAs in the biology of woody perennials and to illustrate their utility in directed genetic modification of trees.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2012 journal article
Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(36), 14699–14704.
MeSH headings : Blotting, Western; Cloning, Molecular; DNA Primers / genetics; Dimerization; Electrophoresis, Polyacrylamide Gel; Gene Regulatory Networks / genetics; Homeostasis / physiology; Models, Biological; Plasmids / genetics; Populus / genetics; Protein Isoforms / genetics; Protein Transport; Real-Time Polymerase Chain Reaction; Transcription Factors / genetics
TL;DR:
A stem-differentiating xylem (SDX)-specific alternative SND1 splice variant, PtrSND1-A2IR, that acts as a dominant negative of S ND1 transcriptional network genes in Populus trichocarpa is discovered and may contribute to transcriptional homeostasis to avoid deleterious effects on xylogenesis and plant growth.
(via Semantic Scholar)
www.pnas.org (publisher PDF)
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Identification of a Mg-protoporphyrin IX monomethyl ester cyclase homologue, EaZIP, differentially expressed in variegated Epipremnum aureum 'Golden Pothos' is achieved through a unique method of comparative study using tissue regenerated plants
JOURNAL OF EXPERIMENTAL BOTANY, 61(5), 1483–1493.
author keywords: Golden Pothos; Mg-protoporphyrin IX monomethyl ester cyclase; tissue culture; transcript abundance; variegation formation
TL;DR:
It is suggested that tissue-culture regeneration of plantlets from different coloured sectors of variegated leaves can be used to investigate the underlying mechanisms ofvariegation, a valuable tool for studying chloroplast biogenesis.
(via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018
2010 review
Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes
[Review of ]. PLANT AND CELL PHYSIOLOGY, 51(1), 144–163.
author keywords: Lignin systems biology; Monolignol biosynthesis; Populus trichocarpa; Promoter motifs; Transcript abundance; Xylem-specific expression
MeSH headings : Amino Acid Motifs / genetics; Biosynthetic Pathways / genetics; Enzymes / biosynthesis; Enzymes / genetics; Gene Expression Regulation, Enzymologic / physiology; Gene Expression Regulation, Plant / physiology; Genome, Plant / genetics; Lignin / biosynthesis; Lignin / genetics; Phloem / enzymology; Phloem / genetics; Plant Shoots / enzymology; Plant Shoots / genetics; Populus / genetics; Populus / metabolism; Promoter Regions, Genetic / genetics; RNA, Messenger / analysis; RNA, Messenger / genetics; RNA, Messenger / metabolism; RNA, Plant / analysis; RNA, Plant / genetics; RNA, Plant / metabolism; Transcription, Genetic / physiology; Xylem / enzymology; Xylem / genetics
TL;DR:
The identified 23 genes that most probably encode monolignol biosynthesis enzymes during wood formation are identified and evidence suggesting functional redundancy at the transcript level for phenylalanine ammonia-lyase and cinnamate 4-hydroxylase is found.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Adenylation of plant miRNAs
NUCLEIC ACIDS RESEARCH, 37(6), 1878–1885.
MeSH headings : Adenosine Monophosphate / analysis; Genetic Variation; MicroRNAs / chemistry; MicroRNAs / metabolism; Populus / genetics; RNA 3' End Processing; RNA Stability; RNA, Plant / chemistry; RNA, Plant / metabolism; Sequence Analysis, RNA
TL;DR:
It is shown that a significant portion of the isolated miRNAs contains, at the 3′-end, one or a few post-transcriptionally added adenylic acid residues, which are distinct in length from the polyadenylate tail added to other plant RNAs for exosome-mediated degradation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
A novel O-Methyltransferase-like gene with a drastic extopic expression in response to tension wood formation in Poupulus trichocarpa
Cellulose Chemistry and Technology, 41(9-10), 521–528.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
Stress-responsive microRNAs in Populus
PLANT JOURNAL, 55(1), 131–151.
author keywords: microRNA; Populus trichocarpa; abiotic stress; cold stress; trees
MeSH headings : Base Sequence; Blotting, Northern; Cloning, Molecular; Cold Temperature; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genes, Plant; Hot Temperature; MicroRNAs / metabolism; Molecular Sequence Data; Oligonucleotide Array Sequence Analysis; Populus / genetics; Populus / physiology; Salinity; Stress, Mechanical; Water / physiology
TL;DR:
The cloning of small RNAs from abiotic stressed tissues of Populus trichocarpa (Ptc) and the identification of 68 putative miRNA sequences that can be classified into 27 families based on sequence homology are reported, which suggests that the members of a family may have different functions.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018
2007 review
MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
[Review of ]. PLANT JOURNAL, 51(6), 1077–1098.
author keywords: microRNA; Pinus taeda L.; Cronartium quercuum f. sp fusiforme; fusiform rust gall; non-protein coding transcript; ta-siRNA
MeSH headings : Base Sequence; Basidiomycota / physiology; Cloning, Molecular; Conserved Sequence; Genomics; MicroRNAs / chemistry; MicroRNAs / metabolism; MicroRNAs / physiology; Molecular Sequence Data; Pinus taeda / genetics; Pinus taeda / microbiology; Plant Diseases / genetics; Polymerase Chain Reaction; Sequence Analysis, RNA; Xylem / genetics
TL;DR:
A new genetic basis for host-pathogen interactions in the development of fusiform rust gall is revealed and 82 plant disease-related transcripts that may also response to miRNA regulation in pine are predicted.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018
2006 journal article
The cellulose synthase gene superfamily and biochemical functions of xylem-specific cellulose synthase-like genes in Populus trichocarpa
PLANT PHYSIOLOGY, 142(3), 1233–1245.
MeSH headings : Animals; Cell Line; Cloning, Molecular; Drosophila / cytology; Gene Expression Profiling; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Genome, Plant; Glucosyltransferases / genetics; Glucosyltransferases / metabolism; Multigene Family; Phylogeny; Populus / enzymology; Xylem / enzymology
TL;DR:
Using Populus trichocarpa as a model angiosperm tree, a systematic analysis in various tissues of the absolute transcript copy numbers of cellulose synthase superfamily genes, the cellulose synthetase (CesA) and the hemicellulose-related cellulOSE synthase-like (Csl) genes is reported.
(via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis
Plant Cell, 17(8), 2186–2203.
MeSH headings : Arabidopsis / genetics; Base Sequence; Conserved Sequence; Gene Expression Regulation, Plant; MicroRNAs / chemistry; MicroRNAs / genetics; Molecular Sequence Data; Plant Stems / genetics; Populus / genetics; RNA, Plant / genetics; Species Specificity; Transcription, Genetic
TL;DR:
It is shown that plant miRNAs can be induced by mechanical stress and may function in one of the most critical defense systems for structural and mechanical fitness.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: NC State University Libraries
Added: August 6, 2018
2003 journal article
The effect of isolation method on the chemical structure of residual lignin
WOOD SCIENCE AND TECHNOLOGY, 37(2), 91–102.
Sources: Web Of Science, ORCID
Added: August 6, 2018
2002 conference paper
Dilute sulfuric acid pretreatment of agricultural residues for ethanol production
ASAE annual International Meeting/CIGR World Congress : July 28-31, 2002, Chicago, Illinois : engineering for a sustainable world, 2, 6198.
Source: NC State University Libraries
Added: August 6, 2018
2002 conference paper
Expression of endoglucanase E1 in transgenic duckweed Lemna minor
Biotechnology for fuels and chemicals : proceedings of the Twenty-Fourth Symposium on Biotechnology for Fuels and Chemicals, held April 28-May 1, 2002, in Gatlinburg, TN.
Source: NC State University Libraries
Added: August 6, 2018
2001 journal article
Functional genomics and cell wall biosynthesis in loblolly pine
Plant Molecular Biology, 47(1/2), 275–291.
author keywords: EST sequencing; microarrays; Pinus taeda; xylogenesis; wood formation
TL;DR:
Gene discovery by partial DNA sequence determination of cDNA clones is an effective means of building a knowledge base for molecular investigations of mechanisms governing aspects of pine growth and development, including the commercially relevant properties of secondary cell walls in wood.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018
1997 journal article
Harvest time and nitrogen source influence in vitro growth of apical buds from Fraser fir seedlings
HORTSCIENCE, 32(1), 125–128.
author keywords: adventitious buds; tissue culture; bud culture; shoot elongation; Abies fraseri
TL;DR:
Litvay's basal medium containing 10 mM glutamine and 10 mM nitrate was the best nitrogen source combination tested when considering bud browning frequency and shoot fresh mass and length after 100 days in culture.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
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