Yeon Yee Oh

Works (17)

Updated: July 5th, 2023 15:57

2019 article

Identification and Characterization of the Core Rice Seed Microbiome

Eyre, A. W., Wang, M., Oh, Y., & Dean, R. A. (2019, January 1). Phytobiomes Journal, Vol. 3, pp. 148–157.

By: A. Eyre n, M. Wang n, Y. Oh n & R. Dean n 

author keywords: endophytes; metagenomics; microbiome; microorganism
topics (OpenAlex): Plant-Microbe Interactions and Immunity; Plant Pathogens and Fungal Diseases; Mycorrhizal Fungi and Plant Interactions
TL;DR: These core members represent valuable candidates for manipulating the rice microbiome, decreasing the use of chemicals while increasing plant performance. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: May 26, 2020

2019 article

Investigating host-pathogen meta-metabolic interactions of Magnaporthe oryzae infected barley using infrared matrix-assisted laser desorption electrospray ionization mass spectrometry

Kalmar, J. G., Oh, Y., Dean, R. A., & Muddiman, D. C. (2019, November 23). Analytical and Bioanalytical Chemistry, Vol. 412, pp. 139–147.

By: J. Kalmar n, Y. Oh n, R. Dean n  & D. Muddiman n 

author keywords: IR-MALDESI; Mass spectrometry imaging; Orbitrap; Magnaporthe oryzae; Image recognition; Polarity switching
MeSH headings : Hordeum / metabolism; Hordeum / microbiology; Host-Pathogen Interactions; Infrared Rays; Magnaporthe / metabolism; Magnaporthe / physiology; Metabolomics; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / methods
topics (OpenAlex): Fermentation and Sensory Analysis; Mass Spectrometry Techniques and Applications; Metabolomics and Mass Spectrometry Studies
TL;DR: Serotonin, a barley defense metabolite, was a compound identified in both positive and negative modes, and metabolites in the melanin pathway, important for infection development of M. oryzae were identified but were unable to be confirmed with MS/MS due to their low abundances. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries
Added: December 9, 2019

2018 article

Sequential Phosphopeptide Enrichment for Phosphoproteome Analysis of Filamentous Fungi: A Test Case Using Magnaporthe oryzae

Oh, Y., Franck, W. L., & Dean, R. A. (2018, January 1). Methods in Molecular Biology, Vol. 1848, pp. 81–91.

By: Y. Oh n, W. Franck n & R. Dean n 

author keywords: Mass spectrometry; Phosphopeptide enrichment; Magnaporthe oryzae; Iron-IMAC; TiO2; Fungus
MeSH headings : Chromatography, Affinity; Chromatography, Liquid; Computational Biology / methods; Data Analysis; Fungal Proteins; Humans; Magnaporthe / metabolism; Phosphopeptides / chemistry; Phosphopeptides / isolation & purification; Phosphopeptides / metabolism; Phosphoproteins / chemistry; Phosphoproteins / isolation & purification; Phosphoproteins / metabolism; Proteome; Proteomics / methods; Tandem Mass Spectrometry; Titanium / chemistry
topics (OpenAlex): Advanced Proteomics Techniques and Applications; Mass Spectrometry Techniques and Applications; Genomics and Phylogenetic Studies
TL;DR: An effective protocol for phosphopeptide enrichment using an Iron-IMAC resin in combination with titanium dioxide (TiO2) beads from trypsin digested protein samples of the filamentous fungus Magnaporthe oryzae is described. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: May 13, 2019

2017 journal article

Comparative proteomic analysis between nitrogen supplemented and starved conditions in Magnaporthe oryzae

Proteome Science, 15.

By: Y. Oh, S. Robertson, J. Parker, D. Muddiman  & R. Dean 

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Current Status of Early Blight Resistance in Tomato: An Update

International Journal of Molecular Sciences, 18(10), 2019.

By: P. Adhikari n, Y. Oh n & D. Panthee n 

author keywords: Alternaria solani; early blight; polygenic inheritance; quantitative trait loci
MeSH headings : Alternaria / pathogenicity; Alternaria / physiology; Chromosome Mapping; Chromosomes, Plant / chemistry; Disease Resistance / genetics; Genetic Linkage; Genetic Markers; Genotype; Solanum lycopersicum / genetics; Solanum lycopersicum / immunology; Solanum lycopersicum / microbiology; Plant Breeding / methods; Plant Diseases / genetics; Plant Diseases / immunology; Plant Diseases / microbiology; Plant Immunity / genetics; Quantitative Trait Loci
topics (OpenAlex): Plant Pathogens and Resistance; Fungal Plant Pathogen Control; Plant-Microbe Interactions and Immunity
TL;DR: The current understanding of causal agents of EB of tomato, resistance genetics and breeding, problems associated with breeding and future prospects are reviewed. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018

2016 article

Examining ubiquitinated peptide enrichment efficiency through an epitope labeled protein

Parker, J., Oh, Y., Moazami, Y., Pierce, J. G., Loziuk, P. L., Dean, R. A., & Muddiman, D. C. (2016, August 24). Analytical Biochemistry, Vol. 512, pp. 114–119.

By: J. Parker  n, Y. Oh n, Y. Moazami n, J. Pierce n , P. Loziuk n, R. Dean n , D. Muddiman n 

author keywords: Ubiquitination; Gly-Gly enrichment; Enrichment efficiency
MeSH headings : Antibodies, Monoclonal, Murine-Derived / chemistry; Epitopes / chemistry; Muramidase / chemistry; Ubiquitinated Proteins / chemistry; Ubiquitination
topics (OpenAlex): Ubiquitin and proteasome pathways; Advanced Proteomics Techniques and Applications; Glycosylation and Glycoproteins Research
TL;DR: It is shown that when conjugated to a lysine containing protein, such as lysozyme, it can be applied as a standard protein to examine ubiquitinated peptide enrichment within a complex background. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2016 article

Identification and characterization of suppressors of plant cell death (SPD) effectors from Magnaporthe oryzae

Sharpee, W., Oh, Y., Yi, M., Franck, W., Eyre, A., Okagaki, L. H., … Dean, R. A. (2016, June 15). Molecular Plant Pathology, Vol. 18, pp. 850–863.

By: W. Sharpee n, Y. Oh n, M. Yi *, W. Franck n, A. Eyre n, L. Okagaki n, B. Valent *, R. Dean n 

author keywords: effector; rice blast; suppressor
MeSH headings : Fungal Proteins / genetics; Fungal Proteins / metabolism; Host-Pathogen Interactions; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Plant Diseases / genetics; Plant Diseases / microbiology; Plant Leaves / metabolism; Plant Leaves / microbiology; Tobacco / metabolism; Tobacco / microbiology
topics (OpenAlex): Plant-Microbe Interactions and Immunity; Plant Pathogenic Bacteria Studies; Toxin Mechanisms and Immunotoxins
TL;DR: A series of effectors that probably act at different stages of the infection process and contribute to the virulence of M. oryzae are identified, some of which were previously unknown or whose function was unknown. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
3. Good Health and Well-being (OpenAlex)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2015 journal article

Genome sequences of three phytopathogenic species of the Magnaporthaceae family of fungi

G3-Genes Genomes Genetics, 5(12), 2539–2545.

By: L. Okagaki, C. Nunes, J. Sailsbery, B. Clay, D. Brown, T. John, Y. Oh, N. Young ...

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

Phosphoproteome Analysis Links Protein Phosphorylation to Cellular Remodeling and Metabolic Adaptation during Magnaporthe oryzae Appressorium Development

Journal of Proteome Research, 14(6), 2408–2424.

By: W. Franck n, E. Gokce n, S. Randall n, Y. Oh n, A. Eyre n, D. Muddiman n , R. Dean n 

author keywords: Magnaporthe oryzae; quantitative phosphoproteomics; appressorium formation; network analysis; transcription factors
MeSH headings : Adaptation, Physiological; Basic Helix-Loop-Helix Transcription Factors / metabolism; Chromatography, Liquid; Fungal Proteins / metabolism; Magnaporthe / metabolism; Magnaporthe / physiology; Oryza / microbiology; Phosphoproteins / metabolism; Phosphorylation; Proteomics; Signal Transduction; Tandem Mass Spectrometry
topics (OpenAlex): Fungal and yeast genetics research; Fungal Biology and Applications; Plant-Microbe Interactions and Immunity
TL;DR: Network analysis incorporating regulation from transcriptomic, proteomic, and phosphoproteomic data revealed new insights into the regulation of the metabolism of conidial storage reserves and phospholipids, autophagy, actin dynamics, and cell wall metabolism during appressorium formation. (via Semantic Scholar)
Sources: Web Of Science, Crossref, NC State University Libraries
Added: August 6, 2018

2013 journal article

Temporal Analysis of theMagnaporthe OryzaeProteome During Conidial Germination and Cyclic AMP (cAMP)-mediated Appressorium Formation

Molecular & Cellular Proteomics, 12(8), 2249–2265.

By: W. Franck*, E. Gokce n, Y. Oh n, D. Muddiman n  & R. Dean n 

MeSH headings : Cyclic AMP / metabolism; Fungal Proteins / metabolism; Magnaporthe / growth & development; Magnaporthe / metabolism; Mitochondrial Proteins / metabolism; Peptide Hydrolases / metabolism; Proteome; Spores, Fungal / growth & development; Spores, Fungal / metabolism
topics (OpenAlex): Fungal and yeast genetics research; Mycotoxins in Agriculture and Food; Plant-Microbe Interactions and Immunity
TL;DR: The data presented here provide the first comprehensive view of the M. oryzae proteome during early infection-related development and highlight biological processes important for pathogenicity. (via Semantic Scholar)
Sources: Web Of Science, Crossref, NC State University Libraries
Added: August 6, 2018

2012 article

In-Depth Analysis of the Magnaporthe oryzae Conidial Proteome

Gokce, E., Franck, W. L., Oh, Y., Dean, R. A., & Muddiman, D. C. (2012, October 8). Journal of Proteome Research, Vol. 11, pp. 5827–5835.

By: E. Gokce n, W. Franck n, Y. Oh n, R. Dean n  & D. Muddiman n 

author keywords: proteomics; mass spectrometry; Magnaporthe oryzae; FASP; statistical tests; differential protein expression
MeSH headings : Cell Nucleus / chemistry; Chemical Fractionation / methods; Chromatography, Liquid / methods; Cytoplasm / chemistry; Fungal Proteins / analysis; Fungal Proteins / chemistry; Magnaporthe / chemistry; Mass Spectrometry / methods; Nanotechnology; Nuclear Proteins / analysis; Nuclear Proteins / chemistry; Peptides / analysis; Peptides / chemistry; Proteome / analysis; Proteome / chemistry; Reproducibility of Results; Sensitivity and Specificity; Spores, Fungal / chemistry; Time Factors
topics (OpenAlex): Fungal and yeast genetics research; Mycotoxins in Agriculture and Food; Advanced Proteomics Techniques and Applications
TL;DR: The identification of 2912 conidial proteins at a 1% protein false discovery rate (FDR) is reported and the most extensive study performed on M. oryzae conidia to date is presented, suggesting the detected proteins build a representative portion of the predicted proteome. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2012 journal article

Polyubiquitin Is Required for Growth, Development and Pathogenicity in the Rice Blast Fungus Magnaporthe oryzae

PLoS ONE, 7(8), e42868.

By: Y. Oh n, W. Franck n, S. Han*, A. Shows n, E. Gokce n, D. Muddiman n , R. Dean n 

Ed(s): K. Nielsen

MeSH headings : Boronic Acids / pharmacology; Bortezomib; Cluster Analysis; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Gene Expression Regulation, Fungal; Germination / genetics; Magnaporthe / genetics; Magnaporthe / growth & development; Magnaporthe / pathogenicity; Mutation; Nitrogen / metabolism; Oryza / microbiology; Plant Diseases / microbiology; Polyubiquitin / genetics; Polyubiquitin / metabolism; Proteasome Inhibitors / pharmacology; Proteolysis / drug effects; Proteomics; Pyrazines / pharmacology; Ubiquitination
topics (OpenAlex): Fungal and yeast genetics research; Ubiquitin and proteasome pathways; Microbial Natural Products and Biosynthesis
TL;DR: This study suggests that ubiquitination of target proteins plays an important role in nutrient assimilation, development and pathogenicity of M. oryzae. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
Sources: Web Of Science, Crossref, NC State University Libraries
Added: August 6, 2018

2011 article

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

Nunes, C. C., Gowda, M., Sailsbery, J., Xue, M., Chen, F., Brown, D. E., … Dean, R. A. (2011, June 2). BMC Genomics, Vol. 12.

By: C. Nunes n, M. Gowda  n, J. Sailsbery n, M. Xue  n, F. Chen *, D. Brown n, Y. Oh n, T. Mitchell*, R. Dean n 

MeSH headings : Base Sequence; DNA, Intergenic / genetics; Gene Expression Profiling; Hyphae / genetics; Magnaporthe / genetics; Magnaporthe / physiology; Molecular Sequence Data; Plants / microbiology; RNA, Fungal / genetics; RNA, Small Untranslated / genetics; RNA, Transfer / genetics; Repetitive Sequences, Nucleic Acid / genetics; Sequence Analysis, RNA
topics (OpenAlex): Plant Disease Resistance and Genetics; Plant and Fungal Interactions Research; Plant-Microbe Interactions and Immunity
TL;DR: The authors' findings suggest M. oryzae small RNAs differentially accumulate in vegetative and specialized-infection tissues and may play an active role in genome integrity and regulating growth and development. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
Sources: NC State University Libraries, NC State University Libraries
Added: August 6, 2018

2010 article

Combining ChIP-chip and Expression Profiling to Model the MoCRZ1 Mediated Circuit for Ca2+/Calcineurin Signaling in the Rice Blast Fungus

Kim, S., Hu, J., Oh, Y., Park, J., Choi, J., Lee, Y.-H., … Mitchell, T. K. (2010, May 20). PLoS Pathogens, Vol. 6.

By: S. Kim *, J. Hu *, Y. Oh n, J. Park *, J. Choi *, Y. Lee *, R. Dean n , T. Mitchell *

MeSH headings : Calcineurin / metabolism; Calcium / metabolism; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Genome, Fungal; Green Fluorescent Proteins / genetics; Magnaporthe / genetics; Oligonucleotide Array Sequence Analysis; Oryza / microbiology; Plant Diseases / microbiology; Signal Transduction / physiology; Transcription Factors / genetics; Transcription Factors / metabolism
topics (OpenAlex): Plant-Microbe Interactions and Immunity; Fungal and yeast genetics research; Enzyme-mediated dye degradation
TL;DR: It is proposed that calcium/calcineurin regulated signal transduction circuits controlling development and pathogenicity manifest through multiple layers of regulation. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2009 article

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae

Meng, S., Brown, D. E., Ebbole, D. J., Torto-Alalibo, T., Oh, Y. Y., Deng, J., … Dean, R. A. (2009, February 1). BMC Microbiology, Vol. 9.

By: S. Meng n, D. Brown n, D. Ebbole *, T. Torto-Alalibo*, Y. Oh n, J. Deng n, T. Mitchell n, R. Dean n 

MeSH headings : Computational Biology; Databases, Protein; Fungal Proteins / genetics; Genome, Fungal; Magnaporthe / genetics; Oryza / microbiology; Sequence Alignment; Sequence Analysis, Protein; Terminology as Topic; Vocabulary, Controlled
topics (OpenAlex): Fungal and yeast genetics research; Plant Pathogens and Fungal Diseases; Microbial Natural Products and Biosynthesis
TL;DR: This analysis provides comprehensive and robust GO annotations of the M. oryzae genome assemblies that will be solid foundations for further functional interrogation of M.oryzae. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2008 article

Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae

Oh, Y., Donofrio, N., Pan, H., Coughlan, S., Brown, D. E., Meng, S., … Dean, R. A. (2008, May 20). Genome Biology, Vol. 9.

By: Y. Oh n, N. Donofrio n, H. Pan n, S. Coughlan*, D. Brown n, S. Meng n, T. Mitchell n, R. Dean n 

MeSH headings : Cell Wall / chemistry; Cell Wall / metabolism; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Gene Expression Regulation, Fungal; Lipid Metabolism; Magnaporthe / cytology; Magnaporthe / genetics; Magnaporthe / physiology; Signal Transduction; Spores, Fungal / cytology; Spores, Fungal / genetics
topics (OpenAlex): Fungal and yeast genetics research; Plant-Microbe Interactions and Immunity; Microbial Natural Products and Biosynthesis
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2005 article

The genome sequence of the rice blast fungus Magnaporthe grisea

Dean, R. A., Talbot, N. J., Ebbole, D. J., Farman, M. L., Mitchell, T. K., Orbach, M. J., … Birren, B. W. (2005, April 1). Nature, Vol. 434, pp. 980–986.

By: R. Dean n , N. Talbot *, D. Ebbole *, M. Farman *, T. Mitchell n, M. Orbach *, M. Thon *, R. Kulkarni n ...

MeSH headings : Fungal Proteins / genetics; Fungal Proteins / metabolism; Genes, Fungal / genetics; Genome, Fungal; Guanosine Diphosphate / metabolism; Guanosine Triphosphate / metabolism; Magnaporthe / classification; Magnaporthe / genetics; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Oryza / microbiology; Plant Diseases / microbiology; Point Mutation / genetics; Proteome / genetics; Proteome / metabolism; Receptors, G-Protein-Coupled / genetics; Repetitive Sequences, Nucleic Acid / genetics; Saccharomyces cerevisiae / metabolism; Signal Transduction; Virulence / genetics
topics (OpenAlex): Fungal and yeast genetics research; Plant-Microbe Interactions and Immunity; Microbial Natural Products and Biosynthesis
TL;DR: The draft sequence of the M. grisea genome is reported, reflecting the clonal nature of this fungus imposed by widespread rice cultivation and analysis of the gene set provides an insight into the adaptations required by a fungus to cause disease. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

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