Jason D. Nichols

Works (8)

Updated: July 5th, 2023 15:55

2009 article

Temperature, not LuxS, mediates AI-2 formation in hydrothermal habitats

Nichols, J. D., Johnson, M. R., Chou, C.-J., & Kelly, R. M. (2009, March 20). FEMS Microbiology Ecology, Vol. 68, pp. 173–181.

By: J. Nichols n, M. Johnson n, C. Chou n & R. Kelly n 

author keywords: autoinducer-2; AI-2; hyperthermophiles; hydrothermal environments; Thermotoga maritima; Pyrococcus furiosus
MeSH headings : Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Carbon-Sulfur Lyases / genetics; Carbon-Sulfur Lyases / metabolism; Gas Chromatography-Mass Spectrometry; Gene Expression Regulation, Bacterial; Homoserine / analogs & derivatives; Homoserine / biosynthesis; Hot Temperature; Lactones; Pyrococcus furiosus / genetics; Pyrococcus furiosus / metabolism; Quorum Sensing; Thermotoga maritima / genetics; Thermotoga maritima / metabolism
topics (OpenAlex): Bacterial biofilms and quorum sensing; Microbial Community Ecology and Physiology; Genomics and Phylogenetic Studies
TL;DR: Autoinducer-2 (AI-2), a boronated furanone and proposed 'universal' interspecies mesophilic bacterial communication signal, could be formed by Thermotoga maritima and Pyrococcus furiosus through a combination of biotic and abiotic reaction steps, but did not induce any detectable quorum-sensing phenotypes in these organisms. (via Semantic Scholar)
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14. Life Below Water (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2008 article

Hydrogenomics of the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus

Werken, H. J. G., Verhaart, M. R. A., VanFossen, A. L., Willquist, K., Lewis, D. L., Nichols, J. D., … Kengen, S. W. M. (2008, September 6). Applied and Environmental Microbiology, Vol. 74, pp. 6720–6729.

By: H. Werken *, M. Verhaart*, A. VanFossen n, K. Willquist*, D. Lewis n, J. Nichols n, H. Goorissen*, E. Mongodin * ...

MeSH headings : Bacterial Proteins / genetics; Carbohydrate Metabolism / genetics; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Enzymes / genetics; Gene Expression Profiling; Genome, Bacterial; Gram-Positive Bacteria / genetics; Metabolic Networks and Pathways / genetics; Molecular Sequence Data; Sequence Analysis, DNA
topics (OpenAlex): Biofuel production and bioconversion; Microbial Metabolic Engineering and Bioproduction; Anaerobic Digestion and Biogas Production
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2008 article

Microwave Activation of Enzymatic Catalysis

Young, D. D., Nichols, J., Kelly, R. M., & Deiters, A. (2008, July 10). Journal of the American Chemical Society, Vol. 130, p. 10048-.

By: D. Young n, J. Nichols n, R. Kelly n  & A. Deiters n

MeSH headings : Carboxylesterase / metabolism; Catalysis; Enzymes / metabolism; Hot Temperature; Kinetics; Microwaves; Pyrococcus furiosus / enzymology; Sulfolobus solfataricus / enzymology; Thermotoga maritima / enzymology; alpha-Galactosidase / metabolism; beta-Glucosidase / metabolism
topics (OpenAlex): Microwave-Assisted Synthesis and Applications; Chemical Synthesis and Analysis; Asymmetric Hydrogenation and Catalysis
TL;DR: This is the first illustration of a specific microwave effect in enzymatic catalysis, used to regulate biocatalysis, in a microwave reactor. (via Semantic Scholar)
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6. Clean Water and Sanitation (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2008 journal article

Polysaccharide Degradation and Synthesis by Extremely Thermophilic Anaerobes

Annals of the New York Academy of Sciences, 1125(1), 322–337.

By: A. VanFossen n, D. Lewis n, J. Nichols n & R. Kelly n 

author keywords: Pyrococcus furiosus; Thermotoga maritima; Caldicellulosiruptor saccharolyticus; extremely thermophilic organism; thermophile; glycoside hydrolases; exopolysaccharides
MeSH headings : Anaerobiosis; Archaeal Proteins / metabolism; Bacterial Proteins / metabolism; Biological Transport; Carbohydrate Metabolism; Glycoside Hydrolases / metabolism; Hot Temperature; Polysaccharides / biosynthesis; Polysaccharides / metabolism; Pyrococcus furiosus / growth & development; Pyrococcus furiosus / metabolism; Thermotoga maritima / growth & development; Thermotoga maritima / metabolism
topics (OpenAlex): Enzyme Production and Characterization; Genomics and Phylogenetic Studies; Microbial Community Ecology and Physiology
TL;DR: The genomes of three model extreme thermophiles and two bacteria, Thermotoga maritima and Caldicellulosiruptor saccharolyticus,encode numerous carbohydrate‐active enzymes, many of which have been characterized biochemically in their native or recombinant forms. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2007 article

Responses of Wild-Type and Resistant Strains of the Hyperthermophilic BacteriumThermotoga maritimato Chloramphenicol Challenge

Montero, C. I., Johnson, M. R., Chou, C.-J., Conners, S. B., Geouge, S. G., Tachdjian, S., … Kelly, R. M. (2007, June 9). Applied and Environmental Microbiology, Vol. 73, pp. 5058–5065.

By: C. Montero n, M. Johnson  n, C. Chou n, S. Conners n, S. Geouge n, S. Tachdjian n, J. Nichols n, R. Kelly n 

MeSH headings : Anti-Bacterial Agents / pharmacology; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Base Sequence; Chloramphenicol / pharmacology; Drug Resistance, Bacterial / genetics; Gene Expression Profiling; Gene Expression Regulation, Bacterial; Hot Temperature; Microbial Sensitivity Tests; Molecular Sequence Data; Oligonucleotide Array Sequence Analysis; Point Mutation; Proteome; RNA, Ribosomal, 23S / genetics; Thermotoga maritima / drug effects; Thermotoga maritima / genetics; Thermotoga maritima / growth & development; Transcription, Genetic
topics (OpenAlex): Genomics and Phylogenetic Studies; Bacterial Genetics and Biotechnology; Microbial Community Ecology and Physiology
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14. Life Below Water (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2006 article

Colocation of Genes Encoding a tRNA-mRNA Hybrid and a Putative Signaling Peptide on Complementary Strands in the Genome of the Hyperthermophilic BacteriumThermotoga maritima

Montero, C. I., Lewis, D. L., Johnson, M. R., Conners, S. B., Nance, E. A., Nichols, J. D., & Kelly, R. M. (2006, September 15). Journal of Bacteriology, Vol. 188, pp. 6802–6807.

By: C. Montero n, D. Lewis n, M. Johnson n, S. Conners n, E. Nance n, J. Nichols n, R. Kelly n 

MeSH headings : Amino Acid Sequence; Anti-Bacterial Agents / pharmacology; Chloramphenicol / pharmacology; Coculture Techniques; DNA, Bacterial / genetics; Gene Expression; Gene Expression Regulation, Bacterial; Genes, Bacterial; Genome, Bacterial; Intracellular Signaling Peptides and Proteins / genetics; Methanococcus; RNA, Bacterial / analysis; RNA, Bacterial / genetics; RNA, Messenger / analysis; RNA, Messenger / genetics; Reverse Transcriptase Polymerase Chain Reaction; Sequence Alignment; Synteny; Thermotoga maritima / genetics; Transcription, Genetic
topics (OpenAlex): Bacterial Genetics and Biotechnology; Bacterial biofilms and quorum sensing; Probiotics and Fermented Foods
TL;DR: Specific DNA probes were designed and used in real-time PCR assays to follow the separate transcriptional responses of the colocated open reading frames (ORFs) during transition from exponential to stationary phase, chloramphenicol challenge, and syntrophic coculture with Methanococcus jannaschii. (via Semantic Scholar)
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14. Life Below Water (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

1993 article

Capture-Recapture Studies for Multiple Strata Including Non-Markovian Transitions

Brownie, C., Hines, J. E., Nichols, J. D., Pollock, K. H., & Hestbeck, J. B. (1993, December 1). Biometrics.

By: C. Brownie*, J. Hines, J. Nichols*, K. Pollock* & J. Hestbeck

author keywords: ATLANTIC FLYWAY; CANADA GEESE; CONDITIONAL LIKELIHOOD; MULTISTATE MODELS; REDUCED-PARAMETER MODELS; SITE FIDELITY
topics (OpenAlex): Wildlife Ecology and Conservation; Genetic and phenotypic traits in livestock; Census and Population Estimation
TL;DR: This work considers capture-recapture studies where release and recapture data are available from each of a number of strata on every capture occasion, and introduces models that relax the Markovian assumption and allow "memory" to operate. (via Semantic Scholar)
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13. Climate Action (Web of Science)
14. Life Below Water (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

1990 journal article

Statistical-inference for capture-recapture experiments

Wildlife Monographs, (107), 1–97.

By: K. Pollock, J. Nichols, C. Brownie & J. Hines

Source: NC State University Libraries
Added: August 6, 2018

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