Paul F. Agris

Human tRNA(UUU)(LYs3) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism

JOURNAL OF MOLECULAR BIOLOGY, 416(4), 467–485.

YrdC exhibits properties expected of a subunit for a tRNA threonylcarbamoyl transferase

RNA, 17(9), 1678–1687.

Binding of aminoglycoside antibiotics to helix 69 of 23S rRNA

Nucleic Acids Research, 38(9), 3094–3105.

Free energy calculation of modified base-pair formation in explicit solvent: A predictive model

RNA, 15(12), 2278–2287.

The structure of the human tRNA(Lys3) anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs

NUCLEIC ACIDS RESEARCH, 37(10), 3342–3353.

A Disease-causing Point Mutation in Human Mitochondrial tRNA(Met) Results in tRNA Misfolding Leading to Defects in Translational Initiation and Elongation

JOURNAL OF BIOLOGICAL CHEMISTRY, 283(49), 34445–34456.

Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding

BIOCHEMISTRY, 47(23), 6117–6129.

Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications

EMBO REPORTS, 9(7), 629–635.

Synthesis and investigation of the 5-formylcytidine modified, anticodon stem and loop of the human mitochondrial tRNA(Met)

NUCLEIC ACIDS RESEARCH, 36(20), 6548–6557.

tRNA's modifications bring order to gene expression

[Review of ]. Current Opinion in Microbiology, 11(2), 134–140.

E-coli glutamyl-tRNA synthetase is inhibited by anticodon stem-loop domains and a minihelix

RNA BIOLOGY, 4(2), 85–92.

Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines

NATURE STRUCTURAL & MOLECULAR BIOLOGY, 14(6), 498–502.

Quality assessment of commercial small interfering RNA and DNA: Monoclonal antibodies and a high-throughput chemiluminescence assay

Analytical Biochemistry, 360(1), 172–174.

Specificity of phage display selected peptides for modified anticodon stem and loop domains of tRNA

PROTEIN JOURNAL, 26(1), 61–73.

tRNA's wobble decoding of the genome: 40 years of modification

[Review of ]. Journal of Molecular Biology, 366(1), 1–13.

A counterintuitive Mg2+-dependent and modification-assisted functional folding of mitochondrial tRNAs

JOURNAL OF MOLECULAR BIOLOGY, 362(4), 771–786.

Assembly of the archaeal box C/D sRNP can occur via alternative pathways and requires temperature-facilitated sRNA remodeling

Journal of Molecular Biology, 362(5), 1025–1042.

Assessing incomplete deprotection of microarray oligonucleotides in situ

Nucleic Acids Research, 34(19).

tRNA regulation of gene expression: Interactions of an mRNA 5 '-UTR with a regulatory tRNA

RNA, 12(7), 1254–1261.

Antibacterial and antiviral agents and methods of screening for the same

Washington, DC: U.S. Patent and Trademark Office.

Methods and compositions for determining the purity of chemically synthesized nucleic acids

Washington, DC: U.S. Patent and Trademark Office.

Decoding the genome: a modified view

[Review of ]. NUCLEIC ACIDS RESEARCH, 32(1), 223–238.

Modified nucleotides in tRNA(Lys) and tRNA(Val) are important for translocation

JOURNAL OF MOLECULAR BIOLOGY, 338(3), 439–444.

Sequence-altered peptide adopts optimum conformation for modification-dependent binding of the yeast tRNA(Phe) anticodon domain

PROTEIN JOURNAL, 23(1), 33–38.

Structural characterization of an intermolecular RNA-RNA interaction involved in the transcription regulation element of a bipartite plant virus

NUCLEIC ACIDS RESEARCH, 32(9), 2819–2828.

The role of modifications in codon discrimination by tRNA(Lys) UUU

NATURE STRUCTURAL & MOLECULAR BIOLOGY, 11(12), 1186–1191.

Naturally-occurring modification restricts the anticodon domain conformational space of tRNA(Phe)

JOURNAL OF MOLECULAR BIOLOGY, 334(5), 901–918.

Using capillary electrophoresis to study methylation effect on RNA-peptide interaction

Acta Biochimica Polonica, 50(3), 857–864.

Accurate translation of the genetic code depends on tRNA modified nucleosides

JOURNAL OF BIOLOGICAL CHEMISTRY, 277(19), 16391–16395.

Highly conserved modified nucleosides influence Mg2+-dependent tRNA folding

NUCLEIC ACIDS RESEARCH, 30(21), 4751–4760.

Identification and quantification of protecting groups remaining in commercial oligonucleotide products using monoclonal antibodies

ANALYTICAL BIOCHEMISTRY, 306(1), 135–143.

Interaction of RNA with phage display selected peptides analyzed by capillary electrophoresis mobility shift assay

RNA, 8(5), 698–704.

QC in antisense oligo synthesis

Anticodon domain methylated nucleosides of yeast tRNA(Phe) are significant recognition determinants in the binding of a phage display selected peptide

BIOCHEMISTRY, 40(47), 14191–14199.

Functional anticodon architecture of human tRNA(Lys3) includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t(6)A

BIOCHEMISTRY, 39(44), 13396–13404.

Modified constructs of the tRNA T Psi C domain to probe substrate conformational requirements of m(1)A(58) and m(5)U(54) tRNA methyltransferases

NUCLEIC ACIDS RESEARCH, 28(6), 1374–1380.

Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNA(UUU)(Lys) species

BIOCHEMISTRY, 39(44), 13390–13395.

Role of modified nucleosides of yeast tRNA(Phe) in ribosomal binding

CELL BIOCHEMISTRY AND BIOPHYSICS, 33(3), 241–252.

Synthesis and properties of uniquely modified oligoribonucleotides: Yeast tRNA(Phe) fragments with 6-methyluridine and 5,6-dimethyluridine at site-specific positions

NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS, 19(3), 515–531.

A distinctive RNA fold: The solution structure of an analogue of the yeast tRNA(Phe) T psi C domain

BIOCHEMISTRY, 38(27), 8647–8656.

Antibacterial agents and methods of screening for the same

Washington, DC: U.S. Patent and Trademark Office.

Experimental models of protein-RNA interaction: Isolation and analyses of tRNA(Phe) and U1 snRNA-binding peptides from bacteriophage display libraries

JOURNAL OF PROTEIN CHEMISTRY, 18(4), 425–435.

Orientation of the tRNA anticodon in the ribosomal P-site: Quantitative footprinting with U-33-modified, anticodon stem and loop domains

RNA, 5(9), 1191–1199.

Single atom modification (O -> S) of tRNA confers ribosome binding

RNA, 5(2), 188–194.

Structural and functional roles of the N1-and N3-protons of Psi at tRNA's position 39

NUCLEIC ACIDS RESEARCH, 27(17), 3543–3549.

The uridine in "U-turn": Contributions to tRNA-ribosomal binding

RNA, 5(4), 503–511.

Thermodynamic contribution of nucleoside modifications to yeast tRNA(Phe) anticodon stem loop analogs

Acta Biochimica Polonica, 46(1), 163–172.

Modified RNAs as potential drug targets

Acta Biochimica Polonica, 45(1), 13–18.

Ribosomal binding of modified tRNA anticodons related to thermal stability

Symposium on RNA Biology II. RNA: Tool and Target (1997: North Carolina Biotechnology Center) Research Triangle Park, North Carolina, USA, October 17-19, 1997 (Nucleic acids symposium series; no. 36), 36, 58–60. Oxford: Oxford University Press.

Unconventional structure of tRNA(Lys)SUU anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1

RNA, 3(4), 420–428.