Amy Grunden Davis, J. M., Angle, J. S., Ferl, R. J., Gilbert, R. A., Grunden, A. M., Rials, T. G., … Toews, M. D. (2024, March 3). The scholarship of honorifics. CROP SCIENCE, Vol. 3. https://doi.org/10.1002/csc2.21219 Somalinga, V., Foss, E., & Grunden, A. M. (2023). Biochemical characterization of a psychrophilic and halotolerant a-carbonic anhydrase from a deep-sea bacterium, Photobacterium profundum. AIMS MICROBIOLOGY, 9(3), 540–553. https://doi.org/10.3934/microbiol.2023028 Ortiz-Medina, J. F., Poole, M. R., Grunden, A. M., & Call, D. F. (2023, March 28). Nitrogen Fixation and Ammonium Assimilation Pathway Expression of Geobacter sulfurreducens Changes in Response to the Anode Potential in Microbial Electrochemical Cells. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 3. https://doi.org/10.1128/aem.02073-22 Cuebas-Irizarry, M. F., & Grunden, A. M. (2023, April 5). Streptomyces spp. as biocatalyst sources in pulp and paper and textile industries: Biodegradation, bioconversion and valorization of waste. MICROBIAL BIOTECHNOLOGY, Vol. 4. https://doi.org/10.1111/1751-7915.14258 Zwilling, J. D., Whitham, J., Zambrano, F., Pifano, A., Grunden, A., Jameel, H., … Gonzalez, R. (2023). Survivability of Salmonella Typhimurium (ATCC 14208) and Listeria innocua (ATCC 51742) on lignocellulosic materials for paper packaging. HELIYON, 9(3). https://doi.org/10.1016/j.heliyon.2023.e14122 Whitham, J. M., & Grunden, A. M. (2023). Trimming and Decontamination of Metagenomic Data can Significantly Impact Assembly and Binning Metrics, Phylogenomic and Functional Analysis. CURRENT BIOINFORMATICS, 18(5), 428–439. https://doi.org/10.2174/1574893618666230227145952 Zervas, A., Ellegaard-Jensen, L., Hennessy, R. C., Bak, F., Guan, Y., Horn Herms, C., … Nicolaisen, M. H. (2022, April 13). Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 4. https://doi.org/10.1128/mra.00222-22 Ahmad, J., Zervas, A., Ellegaard-Jensen, L., Hennessy, R. C., Carbone, I., Cornish, V., … Nicolaisen, M. H. (2022, October 6). Microbial Diversity in Four Rhizocompartments (Bulk Soil, Rhizosphere, Rhizoplane, and Endosphere) of Four Winter Wheat Varieties at the Fully Emerged Flag Leaf Growth Stage. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 10. https://doi.org/10.1128/mra.00663-22 Wapshott-Stehli, H. L., Myers, B. G., Quesada, M. J. H., Grunden, A., & Stapelmann, K. (2022, February 3). Plasma-driven biocatalysis: In situ hydrogen peroxide production with an atmospheric pressure plasma jet increases the performance of OleT(JE) when compared to adding the same molar amount of hydrogen peroxide in bolus. PLASMA PROCESSES AND POLYMERS, Vol. 2. https://doi.org/10.1002/ppap.202100160 Sanders, D., Grunden, A., & Dunn, R. R. (2021). A review of clothing microbiology: the history of clothing and the role of microbes in textiles. BIOLOGY LETTERS, 17(1). https://doi.org/10.1098/rsbl.2020.0700 Brown, D. M., Pawlak, J., & Grunden, A. M. (2021). [Review of Bacterial valorization of pulp and paper industry process streams and waste]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 105(4), 1345–1363. https://doi.org/10.1007/s00253-021-11107-2 Wapshott-Stehli, H. L., & Grunden, A. M. (2021). In situ H2O2 generation methods in the context of enzyme biocatalysis. ENZYME AND MICROBIAL TECHNOLOGY, 145. https://doi.org/10.1016/j.enzmictec.2021.109744 Craig, K., Johnson, B. R., & Grunden, A. (2021). [Review of Leveraging Pseudomonas Stress Response Mechanisms for Industrial Applications]. FRONTIERS IN MICROBIOLOGY, 12. https://doi.org/10.3389/fmicb.2021.660134 Ranieri, P., Sponsel, N., Kizer, J., Rojas‐Pierce, M., Hernández, R., Gatiboni, L., … Stapelmann, K. (2021). Plasma agriculture: Review from the perspective of the plant and its ecosystem. Plasma Processes and Polymers. https://doi.org/10.1002/ppap.202000162 Buhrman, G., Enriquez, P., Dillard, L., Baer, H., Truong, V., Grunden, A. M., & Rose, R. B. (2021). Structure, Function, and Thermal Adaptation of the Biotin Carboxylase Domain Dimer from Hydrogenobacter thermophilus 2-Oxoglutarate Carboxylase. BIOCHEMISTRY, 60(4), 324–345. https://doi.org/10.1021/acs.biochem.0c00815 Wapshott-Stehli, H. L., & Grunden, A. M. (2021). Temperature and solvent exposure response of three fatty acid peroxygenase enzymes for application in industrial enzyme processes. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 571, 60–65. https://doi.org/10.1016/j.bbrc.2021.07.052 Halawani, O., Dunn, R. R., Grunden, A. M., & Smith, A. A. (2020). Bacterial exposure leads to variable mortality but not a measurable increase in surface antimicrobials across ant species. PEERJ, 8. https://doi.org/10.7717/peerj.10412 Tambalo, R. D., Raymundo, A. K., & Grunden, A. M. (2020). Thermostable endoglucanase gene derived by amplification from the genomic DNA of a cellulose-enriched mixed culture from mudspring water of Mt. Makiling, Laguna, Philippines. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 36(3). https://doi.org/10.1007/s11274-020-02825-2 Ortiz-Medina, J. F., Grunden, A. M., Hyman, M. R., & Call, D. F. (2019). Nitrogen Gas Fixation and Conversion to Ammonium Using Microbial Electrolysis Cells. ACS Sustainable Chemistry & Engineering, 7(3), 3511–3519. https://doi.org/10.1021/ACSSUSCHEMENG.8B05763 Mathews, S. L., Epps, M. J., Blackburn, R. K., Goshe, M. B., Grunden, A. M., & Dunn, R. R. (2019). Public questions spur the discovery of new bacterial species associated with lignin bioconversion of industrial waste. ROYAL SOCIETY OPEN SCIENCE, 6(3). https://doi.org/10.1098/rsos.180748 Smith-Moore, C. M., & Grunden, A. M. (2018). [Review of Bacteria and archaea as the sources of traits for enhanced plant phenotypes]. BIOTECHNOLOGY ADVANCES, 36(7), 1900–1916. https://doi.org/10.1016/j.biotechadv.2018.07.007 Somalinga, V., Klemmer, H., Arun, A., Mathews, S., Wapshott, H., & Grunden, A. M. (2018). Cloning, Over-Expression, and Purification of Carbonic Anhydrase from an Extremophilic Bacterium: An Introduction to Advanced Molecular Biology. AMERICAN BIOLOGY TEACHER, 80(1), 29–34. https://doi.org/10.1525/abt.2018.80.1.29 Kitchener, R. L., & Grunden, A. M. (2018). [Review of Methods for enhancing cyanobacterial stress tolerance to enable improved production of biofuels and industrially relevant chemicals]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 102(4), 1617–1628. https://doi.org/10.1007/s00253-018-8755-5 Karam, A. L., McMillan, C. C., Lai, Y. C., Reyes, F. L., Sederoff, H. W., Grunden, A. M., … Ducoste, J. J. (2017). Construction and setup of a bench-scale algal photosynthetic bioreactor with temperature, light, and ph monitoring for kinetic growth tests. Jove-Journal of Visualized Experiments, (124). Kay, K. L., Breidt, F., Fratamico, P. M., Baranzoni, G. M., Kim, G.-H., Grunden, A. M., & Oh, D.-H. (2017). Escherichia coli O157:H7 Acid Sensitivity Correlates with Flocculation Phenotype during Nutrient Limitation. FRONTIERS IN MICROBIOLOGY, 8. https://doi.org/10.3389/fmicb.2017.01404 Duckworth, O. W., Andrews, M. Y., Cubeta, M. A., Grunden, A. M., & Ojiambo, P. S. (2017). Revisiting Graduate Student Training to Address Agricultural and Environmental Societal Challenges. Agricultural & Environmental Letters, 2(1), 170019. https://doi.org/10.2134/ael2017.06.0019 Somalinga, V., Buhrman, G., Arun, A., Rose, R. B., & Grunden, A. M. (2016). A High-Resolution Crystal Structure of a Psychrohalophilic alpha-Carbonic Anhydrase from Photobacterium profundum Reveals a Unique Dimer Interface. PLOS ONE, 11(12). https://doi.org/10.1371/journal.pone.0168022 Whitham, J. M., Schulte, M. J., Bobay, B. G., Bruno-Barcena, J. M., Chinn, M. S., Flickinger, M. C., … Grunden, A. M. (2016). Characterization of Clostridium ljungdahlii OTA1: a non-autotrophic hyper ethanol-producing strain. Applied Microbiology and Biotechnology, 101(4), 1615–1630. https://doi.org/10.1007/s00253-016-7978-6 Mathews, S. L., Grunden, A. M., & Pawlak, J. (2016). Degradation of lignocellulose and lignin by Paenibacillus glucanolyticus. INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 110, 79–86. https://doi.org/10.1016/j.ibiod.2016.02.012 Geng, X.-M., Liu, X., Ji, M., Hoffmann, W. A., Grunden, A., & Xiang, Q.-Y. J. (2016). Enhancing Heat Tolerance of the Little Dogwood Cornus canadensis L. f. with Introduction of a Superoxide Reductase Gene from the Hyperthermophilic Archaeon Pyrococcus furiosus. Frontiers in Plant Science, 7. https://doi.org/10.3389/fpls.2016.00026 Savage, A. M., Hills, J., Driscoll, K., Fergus, D. J., Grunden, A. M., & Dunn, R. R. (2016). Microbial diversity of extreme habitats in human homes. PeerJ, 4(9), e2376. https://doi.org/10.7717/peerj.2376 Mathews, S. L., Smithson, C. E., & Grunden, A. M. (2016). Purification and characterization of a recombinant laccase-like multi-copper oxidase from Paenibacillus glucanolyticus SLM1. JOURNAL OF APPLIED MICROBIOLOGY, 121(5), 1335–1345. https://doi.org/10.1111/jam.13241 Dalal, J., Yalamanchili, R., Hovary, C. L., Ji, M., Rodriguez-Welsh, M., Aslett, D., … al. (2015). A novel gateway-compatible binary vector series (PC-GW) for flexible cloning of multiple genes for genetic transformation of plants. PLASMID, 81, 55–62. https://doi.org/10.1016/j.plasmid.2015.06.003 Mathews, S. L., Pawlak, J., & Grunden, A. M. (2015). Bacterial biodegradation and bioconversion of industrial lignocellulosic streams. Applied Microbiology and Biotechnology, 99(7), 2939–2954. https://doi.org/10.1007/s00253-015-6471-y Ji, M., Barnwell, C. V., & Grunden, A. M. (2015). Characterization of recombinant glutathione reductase from the psychrophilic Antarctic bacterium Colwellia psychrerythraea. EXTREMOPHILES, 19(4), 863–874. https://doi.org/10.1007/s00792-015-0762-1 Whitham, J. M., Tirado-Acevedo, O., Chinn, M. S., Pawlak, J. J., & Grunden, A. M. (2015). Metabolic Response of Clostridium ljungdahlii to Oxygen Exposure. Applied and Environmental Microbiology, 81(24), 8379–8391. https://doi.org/10.1128/aem.02491-15 Utturkar, S. M., Klingeman, D. M., Bruno-Barcena, J. M., Chinn, M. S., Grunden, A. M., Köpke, M., & Brown, S. D. (2015). Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies. Scientific Data, 2(1). https://doi.org/10.1038/SDATA.2015.14 Schreck, S. D., & Grunden, A. M. (2014). [Review of Biotechnological applications of halophilic lipases and thioesterases]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 98(3), 1011–1021. https://doi.org/10.1007/s00253-013-5417-5 Mathews, S. L., Pawlak, J. J., & Grunden, A. M. (2014). Isolation of Paenibacillus glucanolyticus from pulp mill sources with potential to deconstruct pulping waste. BIORESOURCE TECHNOLOGY, 164, 100–105. https://doi.org/10.1016/j.biortech.2014.04.093 Wang, W.-C., Allen, E., Campos, A. A., Cade, R. K., Dean, L., Dvora, M., … Roberts, W. L. (2013). ASI:Dunaliellamarine microalgae to drop-in replacement liquid transportation fuel. Environmental Progress & Sustainable Energy, 32(4), 916–925. https://doi.org/10.1002/EP.11855 Gosse, J. L., Chinn, M. S., Grunden, A. M., Bernal, O. I., Jenkins, J. S., Yeager, C., … Flickinger, M. C. (2012). A versatile method for preparation of hydrated microbial–latex biocatalytic coatings for gas absorption and gas evolution. Journal of Industrial Microbiology & Biotechnology, 39(9), 1269–1278. https://doi.org/10.1007/s10295-012-1135-8 McMahan, L., Grunden, A. M., Devine, A. A., & Sobsey, M. D. (2012). Evaluation of a quantitative H2S MPN test for fecal microbes analysis of water using biochemical and molecular identification. WATER RESEARCH, 46(6), 1693–1704. https://doi.org/10.1016/j.watres.2011.12.037 Kitchener, R. L., & Grunden, A. M. (2012). [Review of Prolidase function in proline metabolism and its medical and biotechnological applications]. JOURNAL OF APPLIED MICROBIOLOGY, 113(2), 233–247. https://doi.org/10.1111/j.1365-2672.2012.05310.x Theriot, C. M., Semcer, R. L., Shah, S. S., & Grunden, A. M. (2011). Improving the Catalytic Activity of Hyperthermophilic Pyrococcus horikoshii Prolidase for Detoxification of Organophosphorus Nerve Agents over a Broad Range of Temperatures. Archaea, 2011, 1–9. https://doi.org/10.1155/2011/565127 McMahan, L., Devine, A. A., Grunden, A. M., & Sobsey, M. D. (2011). Validation of the H2S method to detect bacteria of fecal origin by cultured and molecular methods. Applied Microbiology and Biotechnology, 92(6), 1287–1295. https://doi.org/10.1007/S00253-011-3520-Z Boss, W. F., Sederoff, H. W., Im, Y. J., Moran, N., Grunden, A. M., & Perera, I. Y. (2010). Basal Signaling Regulates Plant Growth and Development. PLANT PHYSIOLOGY, 154(2), 439–443. https://doi.org/10.1104/pp.110.161232 Theriot, C. M., & Grunden, A. M. (2010). Hydrolysis of organophosphorus compounds by microbial enzymes. Applied Microbiology and Biotechnology, 89(1), 35–43. https://doi.org/10.1007/s00253-010-2807-9 Theriot, C. M., Du, X., Tove, S. R., & Grunden, A. M. (2010). Improving the catalytic activity of hyperthermophilic Pyrococcus prolidases for detoxification of organophosphorus nerve agents over a broad range of temperatures. Applied Microbiology and Biotechnology, 87(5), 1715–1726. https://doi.org/10.1007/s00253-010-2614-3 Tirado-Acevedo, O., Chinn, M. S., & Grunden, A. M. (2010). [Review of Production of biofuels from synthesis gas using microbial catalysts]. Advances in applied microbiology, vol 70, 70, 57–92. Theriot, C. M., Tove, S. R., & Grunden, A. M. (2009). Characterization of two proline dipeptidases (prolidases) from the hyperthermophilic archaeon Pyrococcus horikoshii. Applied Microbiology and Biotechnology, 86(1), 177–188. https://doi.org/10.1007/s00253-009-2235-x Johnson, M. C., Devine, A. A., Ellis, J. C., Grunden, A. M., & Fellner, V. (2009). Effects of antibiotics and oil on microbial profiles and fermentation in mixed cultures of ruminal microorganisms. JOURNAL OF DAIRY SCIENCE, 92(9), 4467–4480. https://doi.org/10.3168/jds.2008-1841 Theriot, C. M., Tove, S. R., & Grunden, A. M. (2009). Erratum to: Characterization of two proline dipeptidases (prolidases) from the hyperthermophilic archaeon Pyrococcus horikoshii. Applied Microbiology and Biotechnology, 86(1), 393–393. https://doi.org/10.1007/s00253-009-2300-5 Cotter, J. L., Chinn, M. S., & Grunden, A. M. (2009). Ethanol and acetate production by Clostridium ljungdahlii and Clostridium autoethanogenum using resting cells. BIOPROCESS AND BIOSYSTEMS ENGINEERING, 32(3), 369–380. https://doi.org/10.1007/s00449-008-0256-y Im, Y. J., Ji, M., Lee, A., Killens, R., Grunden, A. M., & Boss, W. F. (2009). Expression of Pyrococcus furiosus Superoxide Reductase in Arabidopsis Enhances Heat Tolerance. PLANT PHYSIOLOGY, 151(2), 893–904. https://doi.org/10.1104/pp.109.145409 Cotter, J. L., Chinn, M. S., & Grunden, A. M. (2009). Influence of process parameters on growth of Clostridium ljungdahlii and Clostridium autoethanogenum on synthesis gas. ENZYME AND MICROBIAL TECHNOLOGY, 44(5), 281–288. https://doi.org/10.1016/j.enzmictec.2008.11.002 Ying, X., Grunden, A. M., Nie, L., Adams, M. W. W., & Ma, K. (2009). Molecular characterization of the recombinant iron-containing alcohol dehydrogenase from the hyperthermophilic Archaeon, Thermococcus strain ES1. EXTREMOPHILES, 13(2), 299–311. https://doi.org/10.1007/s00792-008-0217-z Lee, A. M., Sevinsky, J. R., Bundy, J. L., Grunden, A. M., & Stephenson, J. L., Jr. (2009). Proteomics of Pyrococcus furiosus, a Hyperthermophilic Archaeon Refractory to Traditional Methods. JOURNAL OF PROTEOME RESEARCH, 8(8), 3844–3851. https://doi.org/10.1021/pr801119h Theriot, C. M., Tove, S. R., & Grunden, A. M. (2009). [Review of biotechnological applications of recombinant microbial prolidases]. Advances in applied microbiology, vol 68, 68, 99-. Du, X. L., Tove, S., Kast-Hutcheson, K., & Grunden, A. M. (2005). Characterization of the dinuclear metal center of Pyrococcus furiosus prolidase by analysis of targeted mutants. FEBS LETTERS, 579(27), 6140–6146. https://doi.org/10.1016/j.febslet.2005.09.086 Grunden, A. A., Jenney, F. E., Ma, K. S., Ji, M. Y., Weinberg, M. V., & Adams, M. W. W. (2005). In vitro reconstitution of an NADPH-dependent superoxide reduction pathway from Pyrococcus furiosus. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(3), 1522–1530. https://doi.org/10.1128/AEM.71.3.1522-1530.2005 Im, Y. J., Ji, M. K., Lee, A. M., Boss, W. F., & Grunden, A. M. (2005). Production of a thermostable archaeal superoxide reductase in plant cells. FEBS LETTERS, 579(25), 5521–5526. https://doi.org/10.1016/j.febslet.2005.09.015 Maher, M. J., Ghosh, M., Grunden, A. M., Menon, A. L., Adams, M. W. W., Freeman, H. C., & Guss, J. M. (2004). Structure of the Prolidase fromPyrococcus furiosus†. Biochemistry, 43(10), 2771–2783. https://doi.org/10.1021/bi0356451 Cargile, B. J., Bundy, J. L., Grunden, A. M., & Stephenson, J. L. (2004). Synthesis/degradation ratio mass spectrometry for measuring relative dynamic protein turnover. ANALYTICAL CHEMISTRY, 76(1), 86–97. https://doi.org/10.1021/ac034841a Self, W. T., Grunden, A. M., Hasona, A., & Shanmugam, K. T. (2001). Molybdate transport. RESEARCH IN MICROBIOLOGY, 152(3-4), 311–321. https://doi.org/10.1016/S0923-2508(01)01202-5 Grunden, A., Ghosh, M., & Adams, M. W. W. (2001). Proline dipeptidase from Pyrococcus furiosus. Hyperthermophilic Enzymes. Part A, 330, 433–445. https://doi.org/10.1016/s0076-6879(01)30395-6