Abhishek Singh

Works (19)

Updated: July 5th, 2023 15:49
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2022 article

Evidence for Plant-Conserved Region Mediated Trimeric CESAs in Plant Cellulose Synthase Complexes br

Du, J., Vandavasi, V. G., Molloy, K. R., Yang, H., Massenburg, L. N., Singh, A., … Nixon, B. T. (2022, August 10). BIOMACROMOLECULES, Vol. 8.

By: J. Du *, V. Vandavasi*, K. Molloy *, H. Yang *, L. Massenburg*, A. Singh n, A. Kwansa n, Y. Yingling n  ...

co-author countries: China 🇨🇳 United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Arabidopsis Proteins; Cell Wall; Cellulose; Glucosyltransferases / chemistry; Glucosyltransferases / genetics
Sources: Web Of Science, ORCID
Added: August 11, 2022

2021 journal article

Assessment of AMBER Force Fields for Simulations of ssDNA

JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 17(2), 1208–1217.

By: T. Oweida n, H. Kim n, J. Donald n, A. Singh n & Y. Yingling n 

co-author countries: United States of America 🇺🇸
MeSH headings : DNA, Single-Stranded / chemistry; Fluorescence Resonance Energy Transfer; Models, Chemical; Nuclear Magnetic Resonance, Biomolecular / methods; Nucleic Acid Conformation; Scattering, Small Angle; X-Ray Diffraction
Sources: Web Of Science, ORCID
Added: January 15, 2021

2021 journal article

Phenotypic effects of changes in the FTVTxK region of an Arabidopsis secondary wall cellulose synthase compared with results from analogous mutations in other isoforms

PLANT DIRECT, 5(8).

By: J. Burris n, M. Makarem*, E. Slabaugh n, A. Chaves *, E. Pierce n, J. Lee *, S. Kiemle *, A. Kwansa n ...

co-author countries: United States of America 🇺🇸
author keywords: AtCesA7; cellulose synthesis complex; genetic complementation; irx3-1 mutant; PpCesA5; protein engineering; sum frequency generation spectroscopy
Sources: Web Of Science, ORCID
Added: August 6, 2021

2021 journal article

Weakly Ionically Bound Thermosensitive Hyperbranched Polymers

LANGMUIR, 37(9), 2913–2927.

By: H. Lee *, A. Stryutsky *, A. Mahmood n, A. Singh n, V. Shevchenko, Y. Yingling n , V. Tsukruk *

co-author countries: Ukraine 🇺🇦 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: April 12, 2021

2018 journal article

Bathophenanthroline Disulfonate Ligand-Induced Self-Assembly of Ir(III) Complexes in Water: An Intriguing Class of Photoluminescent Soft Materials

ACS Omega, 3(10), 14027–14038.

By: M. McGoorty n, A. Singh n, T. Deaton n, B. Peterson  n, C. Taliaferro n, Y. Yingling n , F. Castellano n 

co-author countries: United States of America 🇺🇸

Contributors: F. Castellano n , Y. Yingling n , C. Taliaferro n, B. Peterson  n, T. Deaton n, A. Singh n, M. McGoorty n

Sources: Web Of Science, Crossref, ORCID
Added: November 26, 2018

2018 journal article

Cellulose synthase "class specific regions' are intrinsically disordered and functionally undifferentiated

JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 60(6), 481–497.

By: T. Scavuzzo-Duggan*, A. Chaves *, A. Singh n, L. Sethaphong n, E. Slabaugh  n, Y. Yingling n , C. Haigler n , A. Roberts *

co-author countries: United States of America 🇺🇸

Contributors: A. Roberts *, C. Haigler n , Y. Yingling n , E. Slabaugh  n, L. Sethaphong n, A. Singh n, A. Chaves *, T. Scavuzzo-Duggan*

MeSH headings : Amino Acid Sequence; Bryopsida / enzymology; Cellulose / metabolism; Gene Knockout Techniques; Genetic Complementation Test; Genetic Vectors / metabolism; Glucosyltransferases / chemistry; Glucosyltransferases / classification; Intrinsically Disordered Proteins / chemistry; Intrinsically Disordered Proteins / metabolism; Isoenzymes / chemistry; Isoenzymes / metabolism; Models, Molecular; Phylogeny
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Progress in ligand design for monolayer-protected nanoparticles for nanobio interfaces

Biointerphases, 13(6), 06D502.

By: M. Manning  n, A. Kwansa n, T. Oweida n, J. Peerless n, A. Singh n & Y. Yingling n 

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n , A. Singh n, J. Peerless n, T. Oweida n, A. Kwansa n & M. Manning  n

MeSH headings : Drug Carriers / chemistry; Humans; Nanomedicine / economics; Nanomedicine / methods; Nanomedicine / trends; Nanoparticles / chemistry; Surface Properties; Technology, Pharmaceutical / economics; Technology, Pharmaceutical / methods; Technology, Pharmaceutical / trends
Sources: Web Of Science, Crossref, ORCID
Added: December 3, 2018

2016 journal article

A Barley Efflux Transporter Operates in a Na+-Dependent Manner, as Revealed by a Multidisciplinary Platform

Plant Cell, 28(1), 202–218.

By: Y. Nagarajan*, J. Rongala*, S. Luang*, A. Singh n, N. Shadiac*, J. Hayes*, T. Sutton*, M. Gilliham * ...

co-author countries: Australia 🇦🇺 United States of America 🇺🇸

Contributors: Y. Nagarajan*, J. Rongala*, S. Luang*, A. Singh n, N. Shadiac*, J. Hayes*, T. Sutton*, M. Gilliham * ...

MeSH headings : Anions / metabolism; Binding Sites; Borates / metabolism; Cell-Free System; Computer Simulation; Hordeum / metabolism; Lipid Bilayers / metabolism; Liposomes / metabolism; Membrane Transport Proteins / chemistry; Membrane Transport Proteins / metabolism; Models, Molecular; Permeability; Pichia / metabolism; Plant Proteins / chemistry; Plant Proteins / metabolism; Protein Folding; Protein Multimerization; Sodium / metabolism; Triticum / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Comparative Structural and Computational Analysis Supports Eighteen Cellulose Synthases in the Plant Cellulose Synthesis Complex

Scientific Reports, 6(1).

By: B. Nixon *, K. Mansouri  n, A. Singh n, J. Du *, J. Davis n, J. Lee n, E. Slabaugh n, V. Vandavasi* ...

co-author countries: United States of America 🇺🇸

Contributors: C. Haigler n , Y. Yingling n , A. Roberts *, E. Roberts *, H. O'Neill *, V. Vandavasi*, E. Slabaugh n, J. Lee n ...

MeSH headings : Cellulose / biosynthesis; Cellulose / chemistry; Glucosyltransferases / chemistry; Models, Molecular; Plant Proteins / chemistry; Protein Domains; Protein Folding; Protein Structure, Quaternary
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

Prediction of the structures of the plant-specific regions of vascular plant cellulose synthases and correlated functional analysis

Cellulose, 23(1), 145–161.

By: L. Sethaphong n, J. Davis n, E. Slabaugh n, A. Singh n, C. Haigler n  & Y. Yingling n 

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n , C. Haigler n , A. Singh n, E. Slabaugh n, J. Davis n & L. Sethaphong n

author keywords: Arabidopsis thaliana; Cellulose synthesis; Computational protein structure prediction; Isoform specificity; Mutant complementation
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

CELLULOSE SYNTHASE INTERACTIVE1 Is Required for Fast Recycling of Cellulose Synthase Complexes to the Plasma Membrane in Arabidopsis

The Plant Cell, 27(10), tpc.15.00442.

By: L. Lei *, A. Singh n, L. Bashline*, S. Li*, Y. Yingling n  & Y. Gu *

co-author countries: United States of America 🇺🇸

Contributors: L. Lei *, A. Singh n, L. Bashline*, S. Li*, Y. Yingling n  & Y. Gu *

MeSH headings : Arabidopsis / genetics; Arabidopsis / physiology; Arabidopsis / ultrastructure; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Carrier Proteins / genetics; Carrier Proteins / metabolism; Cell Membrane / enzymology; Cellulose / metabolism; Clathrin / metabolism; Endocytosis; Genes, Reporter; Glucosyltransferases / genetics; Glucosyltransferases / metabolism; Microtubules / metabolism; Models, Molecular; Protein Transport; Seedlings / genetics; Seedlings / physiology; Seedlings / ultrastructure
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Characterization of Nucleic Acid Compaction with Histone-Mimic Nanoparticles through All-Atom Molecular Dynamics

ACS NANO, 9(12), 12374–12382.

By: J. Nash n, A. Singh n, N. Li n & Y. Yingling n 

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n , N. Li n, A. Singh n & J. Nash n

author keywords: gold nanoparticles; DNA compaction; RNA compaction; molecular dynamics simulations; nanoparticle binding; nucleosome
MeSH headings : Gold / chemistry; Histones / chemistry; Metal Nanoparticles / chemistry; Molecular Dynamics Simulation; Nucleic Acids / chemistry; Nucleic Acids / metabolism; Nucleic Acids / ultrastructure
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

The effect of point mutations on structure and mechanical properties of collagen-like fibril: A molecular dynamics study

MATERIALS SCIENCE & ENGINEERING C-MATERIALS FOR BIOLOGICAL APPLICATIONS, 32(8), 2583–2588.

By: A. Marlowe n, A. Singh n & Y. Yingling n 

co-author countries: United States of America 🇺🇸

Contributors: A. Marlowe n, A. Singh n & Y. Yingling n 

author keywords: Collagen fibril; Molecular dynamics simulations; Point mutations; Osteogenesis Imperfecta; Mechanical properties
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation

ADVANCED MATERIALS, 24(31), 4261-+.

By: J. Railsback n, A. Singh n, R. Pearce n, T. McKnight*, R. Collazo n , Z. Sitar n, Y. Yingling n , A. Melechko n

co-author countries: United States of America 🇺🇸

Contributors: A. Melechko n, Y. Yingling n , Z. Sitar n, R. Collazo n, T. McKnight*, R. Pearce n, A. Singh n, J. Railsback n

author keywords: gold nanoparticles; DNA compaction; DNA denaturing; cationic ligands; DNA-nanoparticle interactions
MeSH headings : Cations / chemistry; DNA / chemistry; Gold / chemistry; Molecular Dynamics Simulation; Nanoparticles / chemistry; Nucleic Acid Conformation; Nucleic Acid Denaturation; Spectrophotometry, Ultraviolet
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 article

X3DBio1: A Visual Analysis Tool for Biomolecular Structure Exploration

(P. C. Wong, D. L. Kao, M. C. Hao, C. Chen, R. Kosara, M. A. Livingston, … I. Roberts, Eds.). VISUALIZATION AND DATA ANALYSIS 2012, Vol. 8294.

By: H. Yi, A. Singh n & Y. Yingling n 

co-author countries: United States of America 🇺🇸

Ed(s): P. Wong, D. Kao, M. Hao, C. Chen, R. Kosara, M. Livingston, J. Park, I. Roberts

author keywords: molecular visualization; visual analytics; interactive exploration; protein structure; contact map
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Interactions of Cations with RNA Loop-Loop Complexes

BIOPHYSICAL JOURNAL, 101(3), 727–735.

By: A. Singh n, L. Sethaphong n & Y. Yingling n 

co-author countries: United States of America 🇺🇸

Contributors: A. Singh n, L. Sethaphong n & Y. Yingling n 

MeSH headings : Base Pairing; Base Sequence; Cations / metabolism; Metals / metabolism; Molecular Dynamics Simulation; Nucleic Acid Conformation; RNA / chemistry; RNA / genetics; RNA / metabolism; Solvents / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 article

Theoretical Perspective on Properties of DNA-Functionalized Surfaces

Singh, A., Eksiri, H., & Yingling, Y. G. (2011, November 15). JOURNAL OF POLYMER SCIENCE PART B-POLYMER PHYSICS, Vol. 49, pp. 1563–1568.

By: A. Singh n, H. Eksiri n & Y. Yingling n 

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n , H. Eksiri n & A. Singh n

author keywords: DNA-functionalized surface; modeling; nanotechnology; simulations; theory
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Effect of Oligonucleotide Length on the Assembly of DNA Materials: Molecular Dynamics Simulations of Layer-by-Layer DNA Films

LANGMUIR, 26(22), 17339–17347.

By: A. Singh n, S. Snyder n, L. Lee *, A. Johnston *, F. Caruso * & Y. Yingling n 

co-author countries: Australia 🇦🇺 United States of America 🇺🇸

Contributors: Y. Yingling n , F. Caruso *, A. Johnston *, L. Lee *, S. Snyder n & A. Singh n

MeSH headings : Base Sequence; DNA / chemistry; DNA / genetics; Gold / chemistry; Metal Nanoparticles / chemistry; Molecular Dynamics Simulation; Nanotechnology / methods; Nucleic Acid Conformation; Nucleic Acid Hybridization; Oligodeoxyribonucleotides / chemistry; Oligodeoxyribonucleotides / genetics; Poly T / chemistry; Quartz Crystal Microbalance Techniques
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

The Sequence of HIV-1 TAR RNA Helix Controls Cationic Distribution

JOURNAL OF PHYSICAL CHEMISTRY C, 114(12), 5506–5512.

By: L. Sethaphong n, A. Singh n, A. Marlowe n & Y. Yingling n 

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n , A. Marlowe n, A. Singh n & L. Sethaphong n

Sources: Web Of Science, ORCID
Added: August 6, 2018