2024 article
Comparative toxicogenomics database's 20th anniversary: update 2025
Davis, A. P., Wiegers, T. C., Sciaky, D., Barkalow, F., Strong, M., Wyatt, B., … Mattingly, C. J. (2024, October 10). NUCLEIC ACIDS RESEARCH, Vol. 10.
2024 journal article
Transforming environmental health datasets from the comparative toxicogenomics database into chord diagrams to visualize molecular mechanisms
FRONTIERS IN TOXICOLOGY, 6.
2023 journal article
CTD tetramers: a new online tool that computationally links curated chemicals, genes, phenotypes, and diseases to inform molecular mechanisms for environmental health
TOXICOLOGICAL SCIENCES, 195(2), 155–168.
2023 journal article
Developmental cadmium exposure disrupts zebrafish vestibular calcium channels interfering with otolith formation and inner ear function
NEUROTOXICOLOGY, 96, 129–139.
2022 article
Comparative Toxicogenomics Database (CTD): update 2023
Davis, A. P., Wiegers, T. C., Johnson, R. J., Sciaky, D., Wiegers, J., & Mattingly, C. J. (2022, September 28). NUCLEIC ACIDS RESEARCH, Vol. 9.
2021 journal article
CTD anatomy: Analyzing chemical-induced phenotypes and exposures from an anatomical perspective, with implications for environmental health studies
CURRENT RESEARCH IN TOXICOLOGY, 2, 128–139.
2021 journal article
Predicting molecular mechanisms, pathways, and health outcomes induced by Juul e-cigarette aerosol chemicals using the Comparative Toxicogenomics Database
CURRENT RESEARCH IN TOXICOLOGY, 2, 272–281.
2021 journal article
Regulatory status of pesticide residues in cannabis: Implications to medical use in neurological diseases
CURRENT RESEARCH IN TOXICOLOGY, 2, 140–148.
2020 review
Beyond the looking glass: recent advances in understanding the impact of environmental exposures on neuropsychiatric disease
[Review of ]. NEUROPSYCHOPHARMACOLOGY, 45(7), 1086–1096.
2020 journal article
Comparative Toxicogenomics Database (CTD): update 2021
NUCLEIC ACIDS RESEARCH, 49(D1), D1138–D1143.
2020 journal article
Leveraging the Comparative Toxicogenomics Database to Fill in Knowledge Gaps for Environmental Health: A Test Case for Air Pollution-induced Cardiovascular Disease
TOXICOLOGICAL SCIENCES, 177(2), 392–404.
2018 journal article
Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database
ENVIRONMENTAL HEALTH PERSPECTIVES, 126(1).
2018 journal article
Cadmium exposure increases the risk of juvenile obesity: a human and zebrafish comparative study
International Journal of Obesity, 42(7), 1285–1295.
Contributors: A. Green n, C. Hoyo n, n , Y. Luo n, J. Tzeng n, S. Murphy *, D. Buchwalter n , A. Planchart n
2018 journal article
Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways
TOXICOLOGICAL SCIENCES, 165(1), 145–156.
2018 journal article
Heavy Metal Exposure and Metabolic Syndrome: Evidence from Human and Model System Studies
Current Environmental Health Reports, 5(1), 110–124.
2018 journal article
The Comparative Toxicogenomics Database: update 2019
NUCLEIC ACIDS RESEARCH, 47(D1), D948–D954.
2017 review
Applying evolutionary genetics to developmental toxicology and risk assessment
[Review of ]. REPRODUCTIVE TOXICOLOGY, 69, 174–186.
2017 article
Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health
ANNUAL REVIEW OF PUBLIC HEALTH, VOL 38, Vol. 38, pp. 279–294.
2016 journal article
Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database
Environmental Health Perspectives, 124(10), 1592–1599.
Contributors: C. Grondin n, A. Davis n, T. Wiegers n, B. King *, J. Wiegers n, D. Reif n , J. Hoppin n , n
2016 journal article
Advancing toxicology research using in vivo high throughput toxicology with small fish models
Altex-Alternatives to Animal Experimentation, 33(4), 435–452.
2016 journal article
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
2016 journal article
BioCreative V CDR task corpus: a resource for chemical disease relation extraction
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
2016 journal article
From the Cover: Embryonic Exposure to TCDD Impacts Osteogenesis of the Axial Skeleton in Japanese medaka,Oryzias latipes
Toxicological Sciences, 155(2), 485–496.
Contributors: A. Watson, A. Planchart n , n , C. Winkler *, D. Reif n & S. Kullman n
2016 journal article
Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database
PLOS ONE, 11(5).
2016 review
Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Sciences
[Review of ]. ENVIRONMENTAL HEALTH PERSPECTIVES, 124(8), 1136–1140.
2016 journal article
The Comparative Toxicogenomics Database: update 2017
NUCLEIC ACIDS RESEARCH, 45(D1), D972–D978.
2016 journal article
ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
2015 conference paper
Integrating literature-based curated data to predict mechanisms of toxicity
Presented at the OpenTox USA 2015, Baltimore, MD.
Event: OpenTox USA 2015 at Baltimore, MD on February 10-12, 2015
2014 journal article
BioC interoperability track overview
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
2014 journal article
The Comparative Toxicogenomics Database's 10th year anniversary: update 2015
NUCLEIC ACIDS RESEARCH, 43(D1), D914–D920.
2014 journal article
Web services-based text-mining demonstrates broad impacts for interoperability and process simplification
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
2013 journal article
A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
2013 journal article
Text Mining Effectively Scores and Ranks the Literature for Improving Chemical-Gene-Disease Curation at the Comparative Toxicogenomics Database
PLOS ONE, 8(4).
2012 article
BioCreative-2012 Virtual Issue
Wu, C. H., Arighi, C. N., Cohen, K. B., Hirschman, L., Krallinger, M., Lu, Z. Y., … al. (2012, December 5). DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
2012 journal article
Collaborative biocuration--text-mining development task for document prioritization for curation
Database, 2012(0), bas037–bas037.
2012 journal article
Computation of Neutron Multiplicity Statistics Using Deterministic Transport
IEEE TRANSACTIONS ON NUCLEAR SCIENCE, 59(2), 314–322.
2012 journal article
Disease model curation improvements at Mouse Genome Informatics
Database, 2012(0), bar063–bar063.
2012 journal article
MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database
Database, 2012(0), bar065–bar065.
2012 journal article
Providing the Missing Link: the Exposure Science Ontology ExO
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 46(6), 3046–3053.
2012 journal article
Ranking Transitive Chemical-Disease Inferences Using Local Network Topology in the Comparative Toxicogenomics Database
PLOS ONE, 7(11).
2012 journal article
Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database
Database-The Journal of Biological Databases and Curation.
2012 journal article
The Comparative Toxicogenomics Database: update 2013
Nucleic Acids Research, 41(D1), D1104–D1114.
2011 journal article
Aquatic models, genomics and chemical risk management
Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology, 155(1), 169–173.
Contributors: K. Cheng *, D. Hinton *, * & A. Planchart*
2011 journal article
DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD
Bioinformation, 7(4), 154–156.
2011 journal article
The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database
Database, 2011(0), bar034–bar034.
2010 journal article
2,3,7,8-Tetrachlorodibenzo-p-dioxin Upregulates FoxQ1b in Zebrafish Jaw Primordium
Chemical Research in Toxicology, 23(3), 480–487.
Contributors: A. Planchart* & *
2010 journal article
The Comparative Toxicogenomics Database: update 2011
Nucleic Acids Research, 39(Database), D1067–D1072.
2010 chapter
Understanding environment-disease connections: An introduction to the comparative toxicogenomics database (ctd)
In Nature Pathway Interaction Database.
2009 journal article
GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic profiles
Bioinformation, 4(4), 173–174.
2009 journal article
Genetic and environmental pathways to complex diseases
BMC Systems Biology, 3(1), 46.
2009 journal article
Perturbation of Defense Pathways by Low-Dose Arsenic Exposure in Zebrafish Embryos
Environmental Health Perspectives, 117(6), 981–987.
Contributors: , T. Hampton *, K. Brothers *, N. Griffin* & A. Planchart* *
2009 journal article
Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)
BMC Bioinformatics, 10(1).
2008 journal article
An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 5(1), 1–14.
2008 journal article
Chemical databases for environmental health and clinical research
Toxicology Letters, 186(1), 62–65.
2008 journal article
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks
Nucleic Acids Research, 37(Database), D786–D792.
2008 journal article
The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study
BMC Medical Genomics, 1(1).
2007 conference paper
Towards Interactive Visualization for Exploring Conserved Motifs in Noncoding DNA Sequence
2007 Frontiers in the Convergence of Bioscience and Information Technologies. Presented at the 2007 Frontiers in the Convergence of Bioscience and Information Technologies.
Event: 2007 Frontiers in the Convergence of Bioscience and Information Technologies
2006 journal article
The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies
Journal of Experimental Zoology Part A: Comparative Experimental Biology, 305A(9), 689–692.
2006 journal article
The Comparative Toxicogenomics Database: A Cross-Species Resource for Building Chemical-Gene Interaction Networks
Toxicological Sciences, 92(2), 587–595.
2005 conference paper
Preliminary Results for GAMI: A Genetic Algorithms Approach to Motif Inference
2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. Presented at the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.
Event: 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology
2004 journal article
Cell and Molecular Biology of Marine Elasmobranchs: Squalus acanthias and Raja erinacea
Zebrafish, 1(2), 111–120.
2004 journal article
Marine Organism Cell Biology and Regulatory Sequence Discoveryin Comparative Functional Genomics
Cytotechnology, 46(2-3), 123–137.
2004 journal article
Promoting comparative molecular studies in environmental health research: an overview of the comparative toxicogenomics database (CTD)
The Pharmacogenomics Journal, 4(1), 5–8.
2003 journal article
The Comparative Toxicogenomics Database (CTD).
Environmental Health Perspectives, 111(6), 793–795.
2001 journal article
Green fluorescent protein (GFP) as a marker of aryl hydrocarbon receptor (AhR) function in developing zebrafish (Danio rerio).
Environmental Health Perspectives, 109(8), 845–849.
2001 journal article
Posttranscriptional silencing of cytochrome P4501A1 (CYP1A1) during zebrafish (Danio rerio) development
Developmental Dynamics, 222(4), 645–654.
1999 journal article
Estrogen Receptor Reduces CYP1A1 Induction in Cultured Human Endometrial Cells
Journal of Biological Chemistry, 274(6), 3430–3438.
Updated: September 9th, 2019 21:21
2019 - present
2018 - present
2012 - 2019
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