Carolyn Jane Mattingly

Comparative Toxicogenomics Database (CTD): update 2023

Davis, A. P., Wiegers, T. C., Johnson, R. J., Sciaky, D., Wiegers, J., & Mattingly, C. J. (2022, September 28). NUCLEIC ACIDS RESEARCH, Vol. 9.

CTD anatomy: Analyzing chemical-induced phenotypes and exposures from an anatomical perspective, with implications for environmental health studies

CURRENT RESEARCH IN TOXICOLOGY, 2, 128–139.

Comparative Toxicogenomics Database (CTD): update 2021

NUCLEIC ACIDS RESEARCH, 49(D1), D1138–D1143.

Predicting molecular mechanisms, pathways, and health outcomes induced by Juul e-cigarette aerosol chemicals using the Comparative Toxicogenomics Database

CURRENT RESEARCH IN TOXICOLOGY, 2, 272–281.

Regulatory status of pesticide residues in cannabis: Implications to medical use in neurological diseases

CURRENT RESEARCH IN TOXICOLOGY, 2, 140–148.

Beyond the looking glass: recent advances in understanding the impact of environmental exposures on neuropsychiatric disease

[Review of ]. NEUROPSYCHOPHARMACOLOGY, 45(7), 1086–1096.

Leveraging the Comparative Toxicogenomics Database to Fill in Knowledge Gaps for Environmental Health: A Test Case for Air Pollution-induced Cardiovascular Disease

TOXICOLOGICAL SCIENCES, 177(2), 392–404.

The Comparative Toxicogenomics Database: update 2019

NUCLEIC ACIDS RESEARCH, 47(D1), D948–D954.

Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database

ENVIRONMENTAL HEALTH PERSPECTIVES, 126(1).

Cadmium exposure increases the risk of juvenile obesity: a human and zebrafish comparative study

International Journal of Obesity, 42(7), 1285–1295.

Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways

TOXICOLOGICAL SCIENCES, 165(1), 145–156.

Heavy Metal Exposure and Metabolic Syndrome: Evidence from Human and Model System Studies

Current Environmental Health Reports, 5(1), 110–124.

Applying evolutionary genetics to developmental toxicology and risk assessment

[Review of ]. REPRODUCTIVE TOXICOLOGY, 69, 174–186.

Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health

ANNUAL REVIEW OF PUBLIC HEALTH, VOL 38, Vol. 38, pp. 279–294.

The Comparative Toxicogenomics Database: update 2017

NUCLEIC ACIDS RESEARCH, 45(D1), D972–D978.

Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database

Environmental Health Perspectives, 124(10), 1592–1599.

Advancing toxicology research using in vivo high throughput toxicology with small fish models

Altex-Alternatives to Animal Experimentation, 33(4), 435–452.

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.

BioCreative V CDR task corpus: a resource for chemical disease relation extraction

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.

From the Cover: Embryonic Exposure to TCDD Impacts Osteogenesis of the Axial Skeleton in Japanese medaka,Oryzias latipes

Toxicological Sciences, 155(2), 485–496.

Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database

PLOS ONE, 11(5).

Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Sciences

[Review of ]. ENVIRONMENTAL HEALTH PERSPECTIVES, 124(8), 1136–1140.

ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.

Integrating literature-based curated data to predict mechanisms of toxicity

Presented at the OpenTox USA 2015, Baltimore, MD.

The Comparative Toxicogenomics Database's 10th year anniversary: update 2015

NUCLEIC ACIDS RESEARCH, 43(D1), D914–D920.

BioC interoperability track overview

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.

A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.

Text Mining Effectively Scores and Ranks the Literature for Improving Chemical-Gene-Disease Curation at the Comparative Toxicogenomics Database

PLOS ONE, 8(4).

Aquatic models, genomics and chemical risk management

Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology, 155(1), 169–173.

BioCreative-2012 Virtual Issue

Wu, C. H., Arighi, C. N., Cohen, K. B., Hirschman, L., Krallinger, M., Lu, Z. Y., … al. (2012, December 5). DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.

Collaborative biocuration--text-mining development task for document prioritization for curation

Database, 2012(0), bas037–bas037.

Computation of Neutron Multiplicity Statistics Using Deterministic Transport

IEEE TRANSACTIONS ON NUCLEAR SCIENCE, 59(2), 314–322.

Disease model curation improvements at Mouse Genome Informatics

Database, 2012(0), bar063–bar063.

MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database

Database, 2012(0), bar065–bar065.

Providing the Missing Link: the Exposure Science Ontology ExO

ENVIRONMENTAL SCIENCE & TECHNOLOGY, 46(6), 3046–3053.

Ranking Transitive Chemical-Disease Inferences Using Local Network Topology in the Comparative Toxicogenomics Database

PLOS ONE, 7(11).

Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database

Database-The Journal of Biological Databases and Curation.

The Comparative Toxicogenomics Database: update 2013

Nucleic Acids Research, 41(D1), D1104–D1114.

DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD

Bioinformation, 7(4), 154–156.

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database

Database, 2011(0), bar034–bar034.

2,3,7,8-Tetrachlorodibenzo-p-dioxin Upregulates FoxQ1b in Zebrafish Jaw Primordium

Chemical Research in Toxicology, 23(3), 480–487.

The Comparative Toxicogenomics Database: update 2011

Nucleic Acids Research, 39(Database), D1067–D1072.

Understanding environment-disease connections: An introduction to the comparative toxicogenomics database (ctd)

In Nature Pathway Interaction Database.

Chemical databases for environmental health and clinical research

Toxicology Letters, 186(1), 62–65.

Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks

Nucleic Acids Research, 37(Database), D786–D792.

GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic profiles

Bioinformation, 4(4), 173–174.

Genetic and environmental pathways to complex diseases

BMC Systems Biology, 3(1), 46.

Perturbation of Defense Pathways by Low-Dose Arsenic Exposure in Zebrafish Embryos

Environmental Health Perspectives, 117(6), 981–987.

Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)

BMC Bioinformatics, 10(1).

An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 5(1), 1–14.

The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study

BMC Medical Genomics, 1(1).

Towards Interactive Visualization for Exploring Conserved Motifs in Noncoding DNA Sequence

2007 Frontiers in the Convergence of Bioscience and Information Technologies. Presented at the 2007 Frontiers in the Convergence of Bioscience and Information Technologies.

The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies

Journal of Experimental Zoology Part A: Comparative Experimental Biology, 305A(9), 689–692.

The Comparative Toxicogenomics Database: A Cross-Species Resource for Building Chemical-Gene Interaction Networks

Toxicological Sciences, 92(2), 587–595.

Preliminary Results for GAMI: A Genetic Algorithms Approach to Motif Inference

2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. Presented at the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Cell and Molecular Biology of Marine Elasmobranchs: Squalus acanthias and Raja erinacea

Zebrafish, 1(2), 111–120.

Marine Organism Cell Biology and Regulatory Sequence Discoveryin Comparative Functional Genomics

Cytotechnology, 46(2-3), 123–137.

Promoting comparative molecular studies in environmental health research: an overview of the comparative toxicogenomics database (CTD)

The Pharmacogenomics Journal, 4(1), 5–8.

The Comparative Toxicogenomics Database (CTD).

Environmental Health Perspectives, 111(6), 793–795.

Green fluorescent protein (GFP) as a marker of aryl hydrocarbon receptor (AhR) function in developing zebrafish (Danio rerio).

Environmental Health Perspectives, 109(8), 845–849.

Posttranscriptional silencing of cytochrome P4501A1 (CYP1A1) during zebrafish (Danio rerio) development

Developmental Dynamics, 222(4), 645–654.

Estrogen Receptor Reduces CYP1A1 Induction in Cultured Human Endometrial Cells

Journal of Biological Chemistry, 274(6), 3430–3438.