Cranos M Williams

Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 71.

FER and LecRK show haplotype-dependent cold-responsiveness and mediate freezing tolerance in Lotus japonicus

Plant Physiology.

Dynamics of BMP signaling in the earlyDrosophilaembryo

Asafen, H. Y. A., Beseli, A., Hiremath, S., Williams, C. M., & Reeves, G. T. (2022, October 21).

Identification of Transcription Factors Regulating SARS-CoV-2 Tropism Factor Expression by Inferring Cell-Type-Specific Transcriptional Regulatory Networks in Human Lungs

VIRUSES-BASEL, 14(4).

POPEYE intercellular localization mediates cell-specific iron deficiency responses

Muhammad, D. S., Clark, N. M., Haque, S., Williams, C. M., Sozzani, R., & Long, T. A. (2022, August 3). PLANT PHYSIOLOGY, Vol. 8.

Practical spectral photography II: snapshot spectral imaging using linear retarders and microgrid polarization cameras

OPTICS EXPRESS, 30(8), 12337–12352.

A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19, 168–182.

Computer vision approach to characterize size and shape phenotypes of horticultural crops using high-throughput imagery

Computers and Electronics in Agriculture, 182, 106011.

Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa

FRONTIERS IN PLANT SCIENCE, 12.

High-throughput image segmentation and machine learning approaches in the plant sciences across multiple scales

(J. M. Jez & C. N. Topp, Eds.) [Review of ]. EMERGING TOPICS IN LIFE SCIENCES, 5(2), 239–248.

Internal defect scanning of sweetpotatoes using interactance spectroscopy

PLOS ONE, 16(2).

Multiscale Modeling of Cross-Regulatory Transcript and Protein Influences

MODELING TRANSCRIPTIONAL REGULATION, Vol. 2328, pp. 115–138.

Snapshot spectral imaging using Solc-based multivariate optical filters and pixelated polarization cameras

POLARIZATION SCIENCE AND REMOTE SENSING X, Vol. 11833.

BioVision Tracker: A semi-automated image analysis software for spatiotemporal gene expression tracking in Arabidopsis thaliana

In Methods in Cell Biology (Vol. 160, pp. 419–436).

Computer vision approach to characterize size and shape phenotypes of horticultural crops using high-throughput imagery

Haque, S., Lobaton, E., Nelson, N., Yencho, G. C., Pecota, K. V., Mierop, R., … Williams, C. M. (2020, July 26). (Vol. 7). Vol. 7.

Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling

Frontiers in Genetics, 11.

MAGIC: Live imaging of cellular division in plant seedlings using lightsheet microscopy

In Methods in Cell Biology (Vol. 160, pp. 405–418).

Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa

PLOS Computational Biology.

Computational prediction of gene regulatory networks in plant growth and development

Current Opinion in Plant Biology, 47, 96–105.

Directions for research and training in plant omics: Big Questions and Big Data

Plant Direct, 3(4), e00133.

Flux modeling for monolignol biosynthesis

Current Opinion in Biotechnology, 56, 187–192.

Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa

Matthews, M. L., Wang, J. P., Sederoff, R., Chiang, V. L., & Williams, C. M. (2019, June 19). (Vol. 6). Vol. 6.

Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks

NATURE COMMUNICATIONS, 10.

Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis

PLOS ONE, 13(3), e0193896.

Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis

Nature Communications, 9(1), 1579.

Design of digital filters

Digital Signal Processing: Principles, Algorithms and System Design, 205–275.

Digital signal processing systems design

Digital Signal Processing: Principles, Algorithms and System Design, 455–517.

Digital signal processing: principles, algorithms and system design preface

Digital Signal Processing: Principles, Algorithms and System Design, XXVII-.

Finite Word Length Effects

DIGITAL SIGNAL PROCESSING: PRINCIPLES, ALGORITHMS AND SYSTEM DESIGN, pp. 351–388.

Frequency domain analysis

Digital Signal Processing: Principles, Algorithms and System Design, 159–204.

Fundamental DSP concepts

Digital Signal Processing: Principles, Algorithms and System Design, 19–157.

Hardware implementation

Digital Signal Processing: Principles, Algorithms and System Design, 519–561.

Implementation of discrete time systems

Digital Signal Processing: Principles, Algorithms and System Design, 277–350.

Introduction to digital signal processing

Digital Signal Processing: Principles, Algorithms and System Design, 1–17.

More than meets the eye: Emergent properties of transcription factors networks in Arabidopsis

[Review of ]. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 1860(1), 64–74.

Multirate digital signal processing

Digital Signal Processing: Principles, Algorithms and System Design, 389–454.

Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(36), E7632–E7640.

4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa

MOLECULAR PLANT, 8(1), 176–187.

Clustering and Differential Alignment Algorithm: Identification of Early Stage Regulators in the Arabidopsis thaliana Iron Deficiency Response

PLOS ONE, 10(8).

Computational approaches to identify regulators of plant stress response using high-throughput gene expression data

Current Plant Biology, 3-4, 20–29.

Hierarchical Modularization Of Biochemical Pathways Using Fuzzy-C Means Clustering

IEEE TRANSACTIONS ON CYBERNETICS, 44(8), 1473–1484.

Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling

The Plant Cell, 26(3), 876–893.

Monolignol Pathway 4-Coumaric Acid: Coenzyme A Ligases in Populus trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes

PLANT PHYSIOLOGY, 161(3), 1501–1516.

A novel cost function for parameters estimation in oscillatory biochemical systems

2012 Proceedings of IEEE Southeastcon.

Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis

PLANTA, 236(3), 795–808.

Region of attraction estimation of biological continuous Boolean models

Ieee international conference on systems man and cybernetics conference, 1700–1705.

Set membership experimental design for biological systems

BMC SYSTEMS BIOLOGY, 6.

Set membership state and parameter estimation for nonlinear differential equations with sparse discrete measurements

Ieee international conference on systems man and cybernetics conference, 72–77.