Works (50)

Updated: December 2nd, 2023 07:14

2023 journal article

Cellular clarity: a logistic regression approach to identify root epidermal regulators of iron deficiency response

BMC GENOMICS, 24(1).

By: S. Schmittling n, D. Muhammadโ€‰*, S. Haque*, T. Long nโ€‰ & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Iron deficiency; Epidermis; Arabidopsis; Logistic regression; Gene regulatory network; RNA-seq
Sources: Web Of Science, ORCID
Added: November 27, 2023

2023 review

Compositionality, sparsity, spurious heterogeneity, and other data-driven challenges for machine learning algorithms within plant microbiome studies

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 71.

By: S. Busato n, M. Gordon n, M. Chaudhari n, I. Jensenโ€‰*, T. Akyol*, S. Andersen*, C. Williams nโ€‰

co-author countries: Denmark ๐Ÿ‡ฉ๐Ÿ‡ฐ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Machine learning; Deep learning; Plant-associated microbiome; Compositional data analysis
MeSH headings : Microbiota; Algorithms; Machine Learning; Plants
Sources: Web Of Science, ORCID
Added: January 30, 2023

2023 journal article

FER and LecRK show haplotype-dependent cold-responsiveness and mediate freezing tolerance in Lotus japonicus

PLANT PHYSIOLOGY, 191(2), 1138โ€“1152.

co-author countries: Denmark ๐Ÿ‡ฉ๐Ÿ‡ฐ Japan ๐Ÿ‡ฏ๐Ÿ‡ต United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Lotus / metabolism; Haplotypes / genetics; Freezing; Acclimatization / genetics; Adaptation, Physiological / genetics; Gene Expression Regulation, Plant
Sources: ORCID, Web Of Science
Added: February 21, 2023

2023 journal article

Multiplex CRISPR editing of wood for sustainable fiber production

SCIENCE, 381(6654), 216-+.

By: D. Sulisโ€‰ n, X. Jiangโ€‰ n, C. Yang n, B. Marquesโ€‰ n, M. Matthews n, Z. Miller n, K. Lan nโ€‰, C. Cofre-Vegaโ€‰ n ...

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Sources: Web Of Science, ORCID
Added: August 9, 2023

2022 article

Dynamics of BMP signaling in the earlyDrosophilaembryo

Asafen, H. Y. A., Beseli, A., Hiremath, S., Williams, C. M., & Reeves, G. T. (2022, October 21).

By: H. Asafenโ€‰ n, A. Beseliโ€‰ n, S. Hiremath n, C. Williams nโ€‰ & G. Reevesโ€‰*

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Source: ORCID
Added: February 21, 2023

2022 journal article

Identification of Transcription Factors Regulating SARS-CoV-2 Tropism Factor Expression by Inferring Cell-Type-Specific Transcriptional Regulatory Networks in Human Lungs

VIRUSES-BASEL, 14(4).

By: H. Tong n, H. Chen n & C. Williams nโ€‰

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: SARS-CoV-2; single-cell RNA-seq; differential network analysis
MeSH headings : COVID-19; Gene Regulatory Networks; Humans; Lung / metabolism; SARS-CoV-2 / genetics; Transcription Factors / genetics; Viral Tropism / genetics
Sources: Web Of Science, ORCID
Added: May 2, 2022

2022 article

POPEYE intercellular localization mediates cell-specific iron deficiency responses

Muhammad, D. S., Clark, N. M., Haque, S., Williams, C. M., Sozzani, R., & Long, T. A. (2022, August 3). PLANT PHYSIOLOGY, Vol. 8.

By: D. Muhammad n, N. Clark n, S. Haque n, C. Williams nโ€‰, R. Sozzaniโ€‰ n & T. Long nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Iron Deficiencies; Arabidopsis Proteins / metabolism; Gene Expression Regulation, Plant; Basic Helix-Loop-Helix Transcription Factors / metabolism; Arabidopsis / metabolism; Iron / metabolism; Plant Roots / genetics; Plant Roots / metabolism
Sources: Web Of Science, ORCID
Added: August 13, 2022

2022 journal article

Practical spectral photography II: snapshot spectral imaging using linear retarders and microgrid polarization cameras

OPTICS EXPRESS, 30(8), 12337โ€“12352.

By: M. Kudenov n, A. Altaqui n & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Sources: Web Of Science, ORCID
Added: May 2, 2022

2021 journal article

A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19, 168โ€“182.

By: M. Matthewsโ€‰*, J. Wang nโ€‰, R. Sederoff n, V. Chiang n & C. Williams nโ€‰

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Lignin biosynthesis; Multiscale modeling; Cross-regulatory influences; Random forests
Sources: Web Of Science, ORCID
Added: September 20, 2021

2021 journal article

Computer vision approach to characterize size and shape phenotypes of horticultural crops using high-throughput imagery

Computers and Electronics in Agriculture, 182, 106011.

By: S. Haque n, E. Lobaton nโ€‰, N. Nelson nโ€‰, G. Yenchoโ€‰ n, K. Pecota nโ€‰, R. Mierop n, M. Kudenov n, M. Boyetteโ€‰ n, C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: S. Haque n, E. Lobaton nโ€‰, N. Nelson nโ€‰, G. Yenchoโ€‰ n, K. Pecota nโ€‰, R. Mierop n, M. Kudenov n, M. Boyette n, C. Williams nโ€‰

author keywords: Crop phenotyping; Machine learning; Computer vision
Sources: Web Of Science, ORCID, Crossref
Added: March 18, 2021

2021 journal article

Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa

FRONTIERS IN PLANT SCIENCE, 12.

By: C. Lin n, Y. Sunโ€‰*, J. Song n, H. Chen n, R. Shi n, C. Yang n, J. Liuโ€‰ n, S. Tunlaya-Anukit n ...

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: protein interaction; monolignol biosynthesis; wood formation; Populus trichocarpa; BiFC; metabolic flux
Sources: Web Of Science, ORCID
Added: November 8, 2021

2021 review

High-throughput image segmentation and machine learning approaches in the plant sciences across multiple scales

(J. M. Jez & C. N. Topp, Eds.) [Review of ]. EMERGING TOPICS IN LIFE SCIENCES, 5(2), 239โ€“248.

By: E. Buckner n, H. Tong n, C. Ottley nโ€‰ & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Ed(s): J. Jez & C. Topp

MeSH headings : Machine Learning; Phenotype; Plant Development; Plants / genetics; Stress, Physiological
Sources: Web Of Science, ORCID
Added: June 21, 2021

2021 journal article

Internal defect scanning of sweetpotatoes using interactance spectroscopy

PLOS ONE, 16(2).

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Ipomoea batatas; Plant Diseases; Plant Tubers; Spectroscopy, Near-Infrared
Sources: Web Of Science, ORCID
Added: March 22, 2021

2021 article

Multiscale Modeling of Cross-Regulatory Transcript and Protein Influences

MODELING TRANSCRIPTIONAL REGULATION, Vol. 2328, pp. 115โ€“138.

By: M. Matthews* & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Multiscale modeling; Cross-regulation; Transcript regulation; Protein regulation
MeSH headings : Algorithms; Computational Biology / methods; Gene Expression Profiling / methods; Gene Expression Regulation / genetics; Gene Regulatory Networks / genetics; Metabolomics / methods; Models, Theoretical; Populus / genetics; Populus / metabolism; Proteins / genetics; Proteins / metabolism; Proteomics / methods; Transcriptome / genetics
Sources: Web Of Science, ORCID
Added: October 4, 2021

2021 article

Snapshot spectral imaging using Solc-based multivariate optical filters and pixelated polarization cameras

POLARIZATION SCIENCE AND REMOTE SENSING X, Vol. 11833.

By: M. Kudenov n, A. Altaqui n & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Polarization; imaging; spatial; modulation; snapshot; Solc; birefringence; wave plates
Sources: Web Of Science, ORCID
Added: March 21, 2022

2020 chapter

BioVision Tracker: A semi-automated image analysis software for spatiotemporal gene expression tracking in Arabidopsis thaliana

In Methods in Cell Biology (Vol. 160, pp. 419โ€“436).

By: E. Buckner n, I. Madison n, C. Melvin n, T. Long nโ€‰, R. Sozzaniโ€‰ n & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: E. Buckner n, I. Madison n, C. Melvin n, T. Long nโ€‰, R. Sozzani nโ€‰ & C. Williams nโ€‰

MeSH headings : Arabidopsis / genetics; Automation; Gene Expression Regulation, Plant; Image Processing, Computer-Assisted; Plant Roots / anatomy & histology; Software; Time Factors
Sources: Web Of Science, ORCID, Crossref
Added: June 17, 2020

2020 article

Computer vision approach to characterize size and shape phenotypes of horticultural crops using high-throughput imagery

Haque, S., Lobaton, E., Nelson, N., Yencho, G. C., Pecota, K. V., Mierop, R., โ€ฆ Williams, C. M. (2020, July 26). (Vol. 7). Vol. 7.

By: S. Haque n, E. Lobatonโ€‰ n, N. Nelsonโ€‰ n, G. Yenchoโ€‰ n, K. Pecota n, R. Mierop n, M. Kudenovโ€‰ n, M. Boyetteโ€‰ n, C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Source: ORCID
Added: February 21, 2023

2020 journal article

Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling

Frontiers in Genetics, 11.

By: L. Van den Broeck nโ€‰, M. Gordon n, D. Inzรฉโ€‰*, C. Williams nโ€‰ & R. Sozzaniโ€‰ n

co-author countries: Belgium ๐Ÿ‡ง๐Ÿ‡ช United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: gene regulatory network; network properties; network inference; machine learning; experimental methodologies
Sources: Web Of Science, ORCID, Crossref
Added: July 13, 2020

2020 chapter

MAGIC: Live imaging of cellular division in plant seedlings using lightsheet microscopy

In Methods in Cell Biology (Vol. 160, pp. 405โ€“418).

By: I. Madison n, C. Melvin n, E. Buckner n, C. Williams nโ€‰, R. Sozzaniโ€‰ n & T. Long nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: I. Madison n, C. Melvin n, E. Buckner n, C. Williams nโ€‰, R. Sozzani nโ€‰ & T. Long nโ€‰

MeSH headings : Arabidopsis / cytology; Arabidopsis / growth & development; Cell Division; Imaging, Three-Dimensional; Microscopy, Fluorescence / methods; Seedlings / cytology; Seedlings / growth & development
Sources: Web Of Science, ORCID, Crossref
Added: June 17, 2020

2020 journal article

Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa

PLOS Computational Biology.

By: M. Matthewsโ€‰ n, J. Wang nโ€‰, R. Sederoffโ€‰ n, V. Chiangโ€‰ n & C. Williams nโ€‰

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Ed(s): S. Roy

MeSH headings : Computational Biology / methods; Gene Expression Regulation, Plant / genetics; Gene Knockdown Techniques / methods; Lignin / biosynthesis; Lignin / genetics; Lignin / metabolism; Models, Theoretical; Populus / genetics; Wood / genetics
Source: ORCID
Added: April 11, 2020

2019 journal article

Computational prediction of gene regulatory networks in plant growth and development

Current Opinion in Plant Biology, 47, 96โ€“105.

By: S. Haque n, J. Ahmad n, N. Clarkโ€‰ n, C. Williams nโ€‰ & R. Sozzaniโ€‰ n

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Computational Biology / methods; Gene Regulatory Networks; Models, Genetic; Plant Development / genetics; Reproducibility of Results
Sources: Crossref, ORCID, Web Of Science
Added: February 8, 2019

2019 journal article

Directions for research and training in plant omics: Big Questions and Big Data

Plant Direct, 3(4), e00133.

By: C. Argueso*, S. Assmannโ€‰*, K. Birnbaumโ€‰*, S. Chenโ€‰*, J. Dinnenyโ€‰*, C. Doherty nโ€‰, A. Evelandโ€‰*, J. Friesnerโ€‰* ...

co-author countries: Canada ๐Ÿ‡จ๐Ÿ‡ฆ Georgia ๐Ÿ‡ฌ๐Ÿ‡ช United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: genomics; metabolomics; proteomics; training; transcriptomics
Sources: Crossref, ORCID
Added: June 25, 2019

2019 journal article

Flux modeling for monolignol biosynthesis

Current Opinion in Biotechnology, 56, 187โ€“192.

By: J. Wang nโ€‰, M. Matthewsโ€‰ n, P. Naik n, C. Williams nโ€‰, J. Ducoste nโ€‰, R. Sederoffโ€‰ n, V. Chiang n

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: J. Wang nโ€‰, M. Matthewsโ€‰ n, P. Naik n, C. Williams nโ€‰, J. Ducoste nโ€‰, R. Sederoffโ€‰ n, V. Chiang n

MeSH headings : Biosynthetic Pathways; Kinetics; Lignin / biosynthesis; Metabolic Engineering; Metabolic Flux Analysis; Models, Biological
Sources: Crossref, ORCID
Added: April 24, 2019

2019 article

Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa

Matthews, M. L., Wang, J. P., Sederoff, R., Chiang, V. L., & Williams, C. M. (2019, June 19). (Vol. 6). Vol. 6.

By: M. Matthewsโ€‰ n, J. Wang nโ€‰, R. Sederoffโ€‰ n, V. Chiangโ€‰ n & C. Williams nโ€‰

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Source: ORCID
Added: June 20, 2019

2019 journal article

Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks

NATURE COMMUNICATIONS, 10.

By: N. Clark n, E. Buckner n, A. Fisher n, E. Nelson n, T. Nguyen n, A. Simmons*, M. Balaguer n, T. Butler-Smith n ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Asymmetric Cell Division / genetics; Asymmetric Cell Division / physiology; Cell Differentiation; Cell Division; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Stem Cells / cytology; Stem Cells / metabolism; Transcription Factors / metabolism; Transcriptome; Ubiquitination / genetics; Ubiquitins / genetics
Sources: Web Of Science, ORCID
Added: December 30, 2019

2018 journal article

Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis

PLOS ONE, 13(3), e0193896.

By: P. Naik n, J. Wang nโ€‰, R. Sederoff n, V. Chiang n, C. Williams nโ€‰ & J. Ducoste nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: P. Naik n, J. Wang nโ€‰, R. Sederoff n, V. Chiang n, C. Williams nโ€‰ & J. Ducoste nโ€‰

Ed(s): D. Cullen

MeSH headings : Biosynthetic Pathways; Homeostasis; Lignin / biosynthesis; Metabolic Networks and Pathways; Monte Carlo Method; Plant Proteins / metabolism; Populus / enzymology; Populus / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2018 journal article

Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis

Nature Communications, 9(1), 1579.

By: J. Wang*โ€‰, M. Matthewsโ€‰ n, C. Williams nโ€‰, R. Shi n, C. Yangโ€‰ n, S. Tunlaya-Anukit n, H. Chen n, Q. Liโ€‰* ...

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ Taiwan, Province of China ๐Ÿ‡น๐Ÿ‡ผ United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: J. Wang*โ€‰, M. Matthewsโ€‰ n, C. Williams nโ€‰, R. Shi n, C. Yangโ€‰ n, S. Tunlaya-Anukit n, H. Chen n, Q. Liโ€‰* ...

MeSH headings : Gene Expression Regulation, Plant; Lignin / biosynthesis; Lignin / genetics; Plants, Genetically Modified / genetics; Populus / genetics; Populus / metabolism; Transcriptome / genetics; Trees / genetics; Trees / metabolism; Wood / chemistry; Wood / physiology; Xylem / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Design of digital filters

Digital Signal Processing: Principles, Algorithms and System Design, 205โ€“275.

By: W. Alexander & C. Williamsโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Digital signal processing systems design

Digital Signal Processing: Principles, Algorithms and System Design, 455โ€“517.

By: W. Alexander & C. Williamsโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Digital signal processing: principles, algorithms and system design preface

Digital Signal Processing: Principles, Algorithms and System Design, XXVII-.

By: W. Alexander & C. Williamsโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2017 article

Finite Word Length Effects

DIGITAL SIGNAL PROCESSING: PRINCIPLES, ALGORITHMS AND SYSTEM DESIGN, pp. 351โ€“388.

By: W. Alexander*, C. Williams*โ€‰, W. Alexander & C. Williams

Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Frequency domain analysis

Digital Signal Processing: Principles, Algorithms and System Design, 159โ€“204.

By: W. Alexander & C. Williamsโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Fundamental DSP concepts

Digital Signal Processing: Principles, Algorithms and System Design, 19โ€“157.

By: W. Alexander & C. Williamsโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Hardware implementation

Digital Signal Processing: Principles, Algorithms and System Design, 519โ€“561.

By: W. Alexander & C. Williamsโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Implementation of discrete time systems

Digital Signal Processing: Principles, Algorithms and System Design, 277โ€“350.

By: W. Alexander & C. Williamsโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Introduction to digital signal processing

Digital Signal Processing: Principles, Algorithms and System Design, 1โ€“17.

By: W. Alexander & C. Williamsโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2017 review

More than meets the eye: Emergent properties of transcription factors networks in Arabidopsis

[Review of ]. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 1860(1), 64โ€“74.

By: D. Muhammad n, S. Schmittling n, C. Williams nโ€‰ & T. Long nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: D. Muhammad n, S. Schmittling n, C. Williams nโ€‰ & T. Long nโ€‰

author keywords: Transcription factor networks (TFNs); Emergent properties; Mathematical modeling
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Computational Biology / methods; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Plant Development / genetics; Stress, Physiological / genetics; Transcription Factors / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Multirate digital signal processing

Digital Signal Processing: Principles, Algorithms and System Design, 389โ€“454.

By: W. Alexander & C. Williamsโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(36), E7632โ€“E7640.

By: M. Balaguer n, A. Fisher n, N. Clark n, M. Fernandez-Espinosa*, B. Moller*, D. Weijersโ€‰*, J. Lohmannโ€‰*, C. Williams nโ€‰ ...

co-author countries: Germany ๐Ÿ‡ฉ๐Ÿ‡ช Spain ๐Ÿ‡ช๐Ÿ‡ธ Netherlands ๐Ÿ‡ณ๐Ÿ‡ฑ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: root stem cell; root development; cell-type expression profile; gene regulatory network; modeling
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Cluster Analysis; Computational Biology / methods; Gene Expression Profiling / methods; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Plant Roots / genetics; Stem Cells / metabolism; Transcription Factors / genetics; Transcriptome / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa

MOLECULAR PLANT, 8(1), 176โ€“187.

By: C. Lin n, J. Wang nโ€‰, Q. Liโ€‰*, H. Chen n, J. Liuโ€‰ n, P. Loziuk n, J. Songโ€‰ n, C. Williams nโ€‰ ...

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: C. Lin n, J. Wang nโ€‰, Q. Liโ€‰*, H. Chen n, J. Liuโ€‰ n, P. Loziuk n, J. Songโ€‰ n, C. Williams nโ€‰ ...

author keywords: monolignol biosynthesis; Populus trichocarpa; metabolic flux; reaction and inhibition kinetics; LC-MS/MS; 4-coumaroyl and caffeoyl shikimic acids
MeSH headings : Acyl Coenzyme A / metabolism; Coenzyme A Ligases / metabolism; Coumaric Acids / metabolism; Coumaric Acids / pharmacology; Hydroxylation / drug effects; Plant Proteins / metabolism; Populus / drug effects; Populus / enzymology; Populus / metabolism; Propionates; Shikimic Acid / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Clustering and Differential Alignment Algorithm: Identification of Early Stage Regulators in the Arabidopsis thaliana Iron Deficiency Response

PLOS ONE, 10(8).

By: A. Koryachko n, A. Matthiadis n, D. Muhammad n, J. Foret*, S. Bradyโ€‰*, J. Ducoste nโ€‰, J. Tuck nโ€‰, T. Long nโ€‰, C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: A. Koryachko n, A. Matthiadis n, D. Muhammad n, J. Foret*, S. Bradyโ€‰*, J. Ducoste nโ€‰, J. Tuck nโ€‰, T. Long nโ€‰, C. Williams nโ€‰

MeSH headings : Algorithms; Arabidopsis / genetics; Arabidopsis / metabolism; Databases, Genetic; Gene Expression Regulation, Plant; Iron Deficiencies; Sequence Alignment; Software; Transcriptome
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Computational approaches to identify regulators of plant stress response using high-throughput gene expression data

Current Plant Biology, 3-4, 20โ€“29.

By: A. Koryachko n, A. Matthiadis n, J. Ducoste nโ€‰, J. Tuck nโ€‰, T. Long nโ€‰ & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: A. Koryachko n, A. Matthiadis n, J. Ducoste nโ€‰, J. Tuck nโ€‰, T. Long nโ€‰ & C. Williams nโ€‰

author keywords: Stress response; Transcription factors; Gene regulatory networks; Algorithms; Arabidopsis thaliana
Sources: Crossref, ORCID
Added: December 14, 2019

2014 journal article

Hierarchical Modularization Of Biochemical Pathways Using Fuzzy-C Means Clustering

IEEE TRANSACTIONS ON CYBERNETICS, 44(8), 1473โ€“1484.

By: M. Balaguer n & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Clustering algorithms; functional analysis; fuzzy systems; systems biology; time series analysis
MeSH headings : Algorithms; Cluster Analysis; Fuzzy Logic; Humans; MAP Kinase Signaling System; Metabolic Networks and Pathways; Models, Biological; Photosynthesis; Reproducibility of Results; Spatio-Temporal Analysis; Systems Biology / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling

The Plant Cell, 26(3), 876โ€“893.

By: H. Chen n, J. Songโ€‰ n, J. Wang nโ€‰, Y. Linโ€‰ n, J. Ducoste nโ€‰, C. Shuford n, J. Liuโ€‰ n, Q. Li n ...

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: H. Chen n, J. Songโ€‰ n, J. Wang nโ€‰, Y. Linโ€‰ n, J. Ducoste nโ€‰, C. Shuford n, J. Liuโ€‰ n, Q. Li n ...

MeSH headings : Coenzyme A Ligases / genetics; Coenzyme A Ligases / metabolism; Coumaric Acids / metabolism; Immunoprecipitation; Lignin / biosynthesis; Mass Spectrometry; Models, Biological; Populus / metabolism; Propionates; RNA, Messenger / genetics; Substrate Specificity; Systems Biology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2013 journal article

Monolignol Pathway 4-Coumaric Acid: Coenzyme A Ligases in Populus trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes

PLANT PHYSIOLOGY, 161(3), 1501โ€“1516.

By: H. Chen n, J. Songโ€‰ n, C. Williams nโ€‰, C. Shuford n, J. Liuโ€‰ n, J. Wang nโ€‰, Q. Li n, R. Shi n ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: H. Chen n, J. Song n, C. Williams nโ€‰, C. Shuford n, J. Liuโ€‰ n, J. Wang nโ€‰, Q. Li n, R. Shi n ...

MeSH headings : Allosteric Regulation / drug effects; Binding Sites; Biosynthetic Pathways / drug effects; Blotting, Western; Caffeic Acids / pharmacology; Coenzyme A / metabolism; Coenzyme A Ligases / antagonists & inhibitors; Coenzyme A Ligases / metabolism; Computer Simulation; Coumaric Acids / chemistry; Coumaric Acids / metabolism; Coumaric Acids / pharmacology; Kinetics; Lignin / biosynthesis; Lignin / chemistry; Phenylpropionates / metabolism; Phosphoproteins / metabolism; Phosphorylation / drug effects; Plant Extracts; Populus / drug effects; Populus / enzymology; Propionates; Proteomics; Recombinant Fusion Proteins / metabolism; Sequence Homology, Amino Acid; Substrate Specificity / drug effects; Xylem / drug effects; Xylem / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 conference paper

A novel cost function for parameters estimation in oscillatory biochemical systems

2012 Proceedings of IEEE Southeastcon.

By: S. Nabavi n & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2012 journal article

Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis

PLANTA, 236(3), 795โ€“808.

By: J. Wang nโ€‰, C. Shuford n, Q. Li n, J. Songโ€‰ n, Y. Lin n, Y. Sun n, H. Chen n, C. Williams nโ€‰ ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: J. Wang nโ€‰, C. Shuford n, Q. Li n, J. Songโ€‰ n, Y. Lin n, Y. Sun n, H. Chen n, C. Williams nโ€‰ ...

author keywords: Lignin; Syringyl lignin; Angiosperm; Kinetics; Subcellular localization
MeSH headings : Cloning, Molecular; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Hydroxylation; Kinetics; Lignin / analysis; Lignin / biosynthesis; Mixed Function Oxygenases / metabolism; Plants, Genetically Modified; Populus / metabolism; Xylem / enzymology; Yeasts / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 conference paper

Region of attraction estimation of biological continuous Boolean models

Ieee international conference on systems man and cybernetics conference, 1700โ€“1705.

By: M. Matthews n & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2012 journal article

Set membership experimental design for biological systems

BMC SYSTEMS BIOLOGY, 6.

By: S. Marvel n & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Models, Biological; Research Design; Uncertainty
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 conference paper

Set membership state and parameter estimation for nonlinear differential equations with sparse discrete measurements

Ieee international conference on systems man and cybernetics conference, 72โ€“77.

By: S. Marvel n & C. Williams nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

Employment

Updated: December 6th, 2022 12:16

2021 - present

North Carolina State University Raleigh, North Carolina, US
Goodnight Distinguished Professor of Agricultural Analytics Electrical and Computer Engineering

Education

Updated: December 6th, 2022 12:18

North Carolina State University Raleigh, North Carolina, US
Ph.D. Electrical and Computer Engineering

North Carolina State University Raleigh, North Carolina, US
M.S. Electrical and Computer Engineering

North Carolina Agricultural and Technical State University Greensboro, NC, US
B.S. Electrical and Computer Engineering