Carolyn Young

Cross-species transcriptomics identifies core regulatory changes differentiating the asymptomatic asexual and virulent sexual life cycles of grass-symbiotic Epichloë fungi

G3 Genes|Genomes|Genetics.

Population Genetic Characteristics and Mating Type Frequency of Venturia effusa from Pecan in South America

Phytopathology®.

Telomere-to-Telomere Genome Sequences across a Single Genus Reveal Highly Variable Chromosome Rearrangement Rates but Absolute Stasis of Chromosome Number

Journal of Fungi, 8(7), 670.

Mating Type Idiomorphs, Heterothallism, and High Genetic Diversity in Venturia carpophila, Cause of Peach Scab

Phytopathology®, 111(2), 408–424.

The First Genomic Resources for Phymatotrichopsis omnivora, a Soilborne Pezizomycete Pathogen with a Broad Host Range

Phytopathology®, 111(10), 1897–1900.

Chromosome-Level Reference Genome of Venturia effusa, Causative Agent of Pecan Scab

Molecular Plant-Microbe Interactions®, 33(2), 149–152.

Correction: Krauss, J., et al. Epichloë Endophyte Infection Rates and Alkaloid Content in Commercially Available Grass Seed Mixtures in Europe. Microorganisms 2020, 8, 498

Microorganisms.

Epichloë Endophyte Infection Rates and Alkaloid Content in Commercially Available Grass Seed Mixtures in Europe

Microorganisms, 8(4), 498.

First description of the sexual stage of Venturia effusa, causal agent of pecan scab

Mycologia, 112(4), 711–721.

Chromosome-level genome reference of Venturia effusa, causative agent of pecan scab

Winter, D. J., Charlton, N. D., Krom, N., Shiller, J., Bock, C. H., Cox, M. P., & Young, C. A. (2019, August 24). (Vol. 8). Vol. 8.

Digital Imaging to Evaluate Root System Architectural Changes Associated with Soil Biotic Factors

Phytobiomes Journal, 3(2), 102–111.

Epichloe novae-zelandiae, a new endophyte from the endemic New Zealand grass Poa matthewsii

New Zealand Journal of Botany, 8, 1–18.

First description of the sexual stage of Venturia effusa, causal agent of pecan scab

Charlton, N. D., Yi, M., Bock, C. H., Zhang, M., & Young, C. A. (2019, September 30). (Vol. 9). Vol. 9.

Infection Rates and Alkaloid Patterns of Different Grass Species with Systemic Epichloë Endophytes

Applied and Environmental Microbiology, 85(17).

Orthologous peramine and pyrrolopyrazine‐producing biosynthetic gene clusters in Metarhizium rileyi , Metarhizium majus and Cladonia grayi

Environmental Microbiology, 21(3), 928–939.

Variation Among Orchardgrass (Dactylis glomerata) Germplasm for Choke Prevalence Caused by Epichloë typhina

Plant Disease, 103(2), 324–330.

A Year of Phytobiomes

Phytobiomes Journal, 2(2), 53–54.

Digital imaging to evaluate root system architectural changes associated with soil biotic factors

Mattupalli, C., Seethepalli, A., York, L. M., & Young, C. A. (2018, December 23).

Evidence for Sexual Reproduction: Identification, Frequency, and Spatial Distribution of Venturia effusa (Pecan Scab) Mating Type Idiomorphs

Phytopathology®, 108(7), 837–846.

Fine-Scale Population Genetic Structure and Within-Tree Distribution of Mating Types of Venturia effusa, Cause of Pecan Scab in the United States

Phytopathology®, 108(11), 1326–1336.

Molecular identification and characterization of endophytes from uncultivated barley

Mycologia, 110(3), 453–472.

Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae

PLOS Genetics, 14(10), e1007467.

Repeat elements organize 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae

Winter, D. J., Ganley, A. R. D., Young, C. A., Liachko, I., Schardl, C. L., Dupont, P.-Y., … Cox, M. P. (2018, June 4). (Vol. 6). Vol. 6.

Supervised Classification of RGB Aerial Imagery to Evaluate the Impact of a Root Rot Disease

Remote Sensing.

Disruption of calcineurin catalytic subunit (cnaA) in Epichloë festucae induces symbiotic defects and intrahyphal hyphae formation

Molecular Plant Pathology, 10.

Interspecific and intraspecific hybrid Epichloë species symbiotic with the North American native grass Poa alsodes

Mycologia, 109(3), 459–474.

Metabolism or behavior: explaining the performance of aphids on alkaloid-producing fungal endophytes in annual ryegrass (Lolium multiflorum)

Oecologia, 185(2), 245–256.

Population Genetic Structure of Venturia effusa, Cause of Pecan Scab, in the Southeastern United States

Phytopathology, 107(5), 607–619.

Toxin-producing Epichloë bromicola strains symbiotic with the forage grass Elymus dahuricus in China

Mycologia, 1, 1–13.

Variation in the Prevalence and Transmission of Heritable Symbionts Across Host Populations in Heterogeneous Environments

Microbial Ecology, 74(3), 640–653.

Welcome to Phytobiomes

Phytobiomes Journal.

Long-term ungulate exclusion reduces fungal symbiont prevalence in native grasslands.

181(4), 1151–1161,

The Effect of Endophytic Fungi on Nematode Populations in Summer-dormant and Summer-active Tall Fescue

Journal of Nematology, 48(2), 87–94.

A mutualistic endophyte alters the niche dimensions of its host plant

AoB PLANTS, 7(0), plv005–plv005.

De Novo Assembly and Characterization of Tall Fescue Transcriptome under Water Stress

The Plant Genome, 8(2), 0.

Disparate Independent Genetic Events Disrupt the Secondary Metabolism Gene perA in Certain Symbiotic Epichloë Species

Appl. Environ. Microbiol., 81(8), 2797–2807.

Endophytic Epichloë species and their grass hosts: from evolution to applications

Plant Mol Biol, 90(6), 665–675.

Genetics, Genomics and Evolution of Ergot Alkaloid Diversity

Toxins, 7(4), 1273–1302.

Two distinct Epichloe species symbiotic with Achnatherum inebrians, drunken horse grass

Mycologia, 107(4), 863–873.

Vegetative Hyphal Fusion and Subsequent Nuclear Behavior in Epichloë Grass Endophytes

PLoS ONE, 10(4), e0121875.

Alkaloid Genotype Diversity of Tall Fescue Endophytes

Crop Science, 54(2), 667.

Alkaloid Variation Among Epichloid Endophytes of Sleepygrass (Achnatherum robustum) and Consequences for Resistance to Insect Herbivores

J Chem Ecol, 41(1), 93–104.

Characterization of Epichloë coenophiala within the US: are all tall fescue endophytes created equal?

Front. Chem., 2.

Ether bridge formation in loline alkaloid biosynthesis

Phytochemistry, 98, 60–68.

Fungal Endophytes of Grasses and Morning Glories, and Their Bioprotective Alkaloids

Schardl, C. L., Chen, L., & Young, C. A. (2014, March). Natural Products, pp. 125–145.

Highly Sensitive End-Point PCR and SYBR Green qPCR Detection of Phymatotrichopsis omnivora , Causal Fungus of Cotton Root Rot

Plant Disease, 98(9), 1205–1212.

Interspecific hybridization and bioactive alkaloid variation increases diversity in endophytic Epichloë species of Bromus laevipes

FEMS Microbiol Ecol, 90(1), 276–289.

Stockpiled Forage Yield and Nutritive Value of Summer-Dormant and Summer-Active Tall Fescue in a Marginal Environment

Forage and Grazinglands, 12(1), 0.

Currencies of mutualisms: sources of alkaloid genes in vertically transmitted epichloae

Toxins, 6;5(6):1064-88.

Deletion and Gene Expression Analyses Define the Paxilline Biosynthetic Gene Cluster in Penicillium paxilli

Toxins, 5(8), 1422–1446.

FORAGES AND PASTURES SYMPOSIUM: Fungal endophytes of tall fescue and perennial ryegrass: Pasture friend or foe?

Journal of Animal Science, 91(5), 2379–2394.

Plant-Symbiotic Fungi as Chemical Engineers: Multi-Genome Analysis of the Clavicipitaceae Reveals Dynamics of Alkaloid Loci

PLoS Genet, 9(2), e1003323.

Characterization and Effectiveness of Co-inoculation of Strains on Annual Medics

Crop Science, 0(0), 1.

Chemotypic diversity of epichloae, fungal symbionts of grasses

Fungal Ecology, 30;5(3):331-44.

Chemotypic diversity of epichloae, fungal symbionts of grasses

Fungal Ecology, 5(3), 331–344.

Effects of selected endophyte and tall fescue cultivar combinations on steer grazing performance, indicators of fescue toxicosis, feedlot performance, and carcass traits-

Journal of Animal Science, 91(1), 342–355.

Endophytes of native grasses from South America: Biodiversity and ecology

Fungal Ecology, 5(3), 357–363.

Epichloe canadensis, a new interspecific epichloid hybrid symbiotic with Canada wildrye (Elymus canadensis)

Mycologia, 104(5), 1187–1199.

Genotypic and Chemotypic Diversity of Neotyphodium Endophytes in Tall Fescue from Greece

Applied and Environmental Microbiology, 78(16), 5501–5510.

Mediterranean and Continental Tall Fescue: I. Effects of Endophyte Status on Leaf Extension, Proline, Mono- and Disaccharides, Fructan, and Freezing Survivability

Crop Science, 52(1), 451.

Abundant Degenerate Miniature Inverted-Repeat Transposable Elements in Genomes of Epichloid Fungal Endophytes of Grasses

Genome Biology and Evolution, 3(0), 1253–1264.

Effectiveness of Inoculants on Annual Medics

Crop Science, 51(5), 2249.

Registration of ‘Texoma’ MaxQ II Tall Fescue

Journal of Plant Registrations, 5(1), 14.

Agronomic Performance and Lamb Health among Several Tall Fescue Novel Endophyte Combinations in the South-Central USA

Crop Science, 50(4), 1552.

Phymatotrichum (cotton) root rot caused by Phymatotrichopsis omnivora : retrospects and prospects

Molecular Plant Pathology, 11(3), 325–334.

Prevalence of an intraspecific Neotyphodium hybrid in natural populations of stout wood reed (Cinna arundinacea L.) from eastern North America

Mycologia, 103(1), 75–84.

Genetic Variation within and among Wildrye ( and ) Populations from the Southern Great Plains

Crop Science, 49(3), 913.

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

NATURE, 461(7262), 393–398.

In Planta Expression Screens of Phytophthora infestans RXLR Effectors Reveal Diverse Phenotypes, Including Activation of the Solanum bulbocastanum Disease Resistance Protein Rpi-blb2

THE PLANT CELL ONLINE, 21(9), 2928–2947.

Indole-Diterpene Biosynthetic Capability of Epichloe Endophytes as Predicted by ltm Gene Analysis

Applied and Environmental Microbiology, 75(7), 2200–2211.

Regulation and Functional Analysis of Bioprotective Metabolite Genes from the Grass Symbiont Epichloe festucae

Scott, B., Wrenn, R. E., May, K. J., Takemoto, D., Young, C. A., Tanaka, A., … Johnson, R. D. (2009, August). Recent Developments in Management of Plant Diseases, pp. 199–213.

Effector Genomics Accelerates Discovery and Functional Profiling of Potato Disease Resistance and Phytophthora Infestans Avirulence Genes

PLoS ONE, 3(8), e2875.

Neotyphodium fungal endophytes confer physiological protection to perennial ryegrass (Lolium perenne L.) subjected to a water deficit

Environmental and Experimental Botany, 63(1-3), 183–199.

The genetic basis for indole-diterpene chemical diversity in filamentous fungi

Mycological Research, 112(2), 184–199.

A Polyketide Synthase Gene Required for Biosynthesis of the Aflatoxin-like Toxin, Dothistromin

Mycopathologia, 161(5), 283–294.

A complex gene cluster for indole-diterpene biosynthesis in the grass endophyte Neotyphodium lolii

Fungal Genetics and Biology, 43(10), 679–693.

The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana

The Plant Journal, 48(2), 165–176.

The Malarial Host-Targeting Signal Is Conserved in the Irish Potato Famine Pathogen

PLoS Pathog, 2(5), e50.

Molecular cloning and genetic analysis of a symbiosis-expressed gene cluster for lolitrem biosynthesis from a mutualistic endophyte of perennial ryegrass

Mol Genet Genomics, 274(1), 13–29.

Structural analysis of a peptide synthetase gene required for ergopeptine production in the endophytic fungus Neotyphodium lolii

DNA Sequence, 16(5), 379–385.

Genetic Manipulation of Clavicipitalean Endophytes

Scott, B., & Young, C. (2003, July). Clavicipitalean Fungi.

Molecular analysis of two cytochrome P450 monooxygenase genes required for paxilline biosynthesis in Penicillium paxilli , and effects of paxilline intermediates on mammalian maxi-K ion channels

Molecular Genetics and Genomics, 270(1), 9–23.

Elimination of ergovaline from a grass-Neotyphodium endophyte symbiosis by genetic modification of the endophyte

Proceedings of the National Academy of Sciences, 98(22), 12820–12825.

Molecular cloning and genetic analysis of an indole-diterpene gene cluster from Penicillium paxilli

Mol Microbiol, 39(3), 754–764.

Paxilline-negative mutants of Penicillium paxilli generated by heterologous and homologous plasmid integration

Current Genetics, 33(5), 368–377.

Novel and Complex Chromosomal Arrangement ofRhizobium/otiNodulation Genes

MPMI, 9(3), 187.

PCR amplification of the fas-1 gene for the detection of virulent strains of Rhodococcus fascians

Plant Pathology, 45(3), 407–417.

Expression and nucleotide sequence of the Clostridium acetobutylicum beta-galactosidase gene cloned in Escherichia coli.

Journal of Bacteriology, 173(10), 3084–3095.

Nucleotide sequence of Rhizobium loti nod I

Nucl Acids Res, 18(22), 6691–6691.

Epichloë Endophytes: Models of an Ecological Strategy

Young, C., & Wilkinson, H. H. Cellular and Molecular Biology of Filamentous Fungi, pp. 660–675.

Molecular and Genetic Analysis of Lolitrem and Peramine Biosynthetic Pathways in Epkhloë Festucae

Scott, B., Young, C., Tanaka, A., Christenseq, M., Tapper, B., & Bryan, G. Neotyphodium in Cool-Season Grasses, pp. 93–101.

Molecular and genetic analysis of symbiosis expressed secondary metabolite genes from the mutualistic fungal endophytes Neotyphodium lolii and Epichloë festucae

Scott, B., Young, C. A., Tanaka, A., & Parker, E. J. (G. D. Robson, P. West, & G. Gadd, Eds.). Exploitation of Fungi, pp. 59–77.