Dereje Jima Cevik, S. E., Skaar, D. A., Jima, D. D., Liu, A. J., Ostbye, T., Whitson, H. E., … Planchart, A. (2024). DNA methylation of imprint control regions associated with Alzheimer's disease in non-Hispanic Blacks and non-Hispanic Whites. CLINICAL EPIGENETICS, 16(1). https://doi.org/10.1186/s13148-024-01672-4 Grzymkowski, J. K., Chiu, Y.-C., Jima, D. D., Wyatt, B. H., Jayachandran, S., Stutts, W. L., & Nascone-Yoder, N. M. (2024). Developmental regulation of cellular metabolism is required for intestinal elongation and rotation. DEVELOPMENT, 151(1). https://doi.org/10.1242/dev.202020 Broadaway, K. A., Brotman, S. M., Rosen, J. D., Currin, K. W., Alkhawaja, A. A., Etheridge, A. S., … Mohlke, K. L. (2024). Liver eQTL meta-analysis illuminates potential molecular mechanisms of cardiometabolic traits. AMERICAN JOURNAL OF HUMAN GENETICS, 111(9). https://doi.org/10.1016/j.ajhg.2024.07.017 Witherspoon, J. G., Hall, J. R., Jima, D., Atkins, H. M., Wamsley, N. T., Major, M. B., … Smart, R. C. (2024). Mutant Nrf2E79Q enhances the promotion and progression of a subset of oncogenic Ras keratinocytes and skin tumors. REDOX BIOLOGY, 75. https://doi.org/10.1016/j.redox.2024.103261 Cero, C., House, J. S., Verdi, V., Ferguson, J. L., Jima, D. D., Selmek, A. A., … Shive, H. R. (2024, November 7). Profiling the cancer-prone microenvironment in a zebrafish model for MPNST. ONCOGENE, Vol. 11. https://doi.org/10.1038/s41388-024-03210-1 Vidal, A. C., Chandramouli, S. A., Marchesoni, J., Brown, N., Liu, Y., Murphy, S. K., … Moylan, C. A. (2023). AHRR Hypomethylation mediates the association between maternal smoking and metabolic profiles in children. HEPATOLOGY COMMUNICATIONS, 7(10). https://doi.org/10.1097/HC9.0000000000000243 Harris, H. A., Friedman, C., Starling, A. P., Dabelea, D., Johnson, S. L., Fuemmeler, B. F., … Mulder, R. H. (2023). An epigenome-wide association study of child appetitive traits and DNA methylation. APPETITE, 191. https://doi.org/10.1016/j.appet.2023.107086 Kadalayil, L., Alam, M. Z., White, C. H., Ghantous, A., Walton, E., Gruzieva, O., … Holloway, J. W. (2023). Analysis of DNA methylation at birth and in childhood reveals changes associated with season of birth and latitude. CLINICAL EPIGENETICS, 15(1). https://doi.org/10.1186/s13148-023-01542-5 House, J. S., Gray, S., Owen, J. R., Jima, D. D., Smart, R. C., & Hall, J. R. (2023). C/EBP beta deficiency enhances the keratinocyte innate immune response to direct activators of cytosolic pattern recognition receptors. INNATE IMMUNITY, 29(1-2), 14–24. https://doi.org/10.1177/17534259231162192 Simmers, M. D., Jima, D. D., Tsuji, Y., & Cowley, M. (2023). LncRNA Tuna is activated in cadmium-induced placental insufficiency and drives the NRF2-mediated oxidative stress response. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 11. https://doi.org/10.3389/fcell.2023.1151108 Newell, A. J., Jima, D., Reading, B., & Patisaul, H. B. (2023, July 3). Machine learning reveals common transcriptomic signatures across rat brain and placenta following developmental organophosphate ester exposure. TOXICOLOGICAL SCIENCES, Vol. 7. https://doi.org/10.1093/toxsci/kfad062 Choudhary, P., Monasso, G. S., Karhunen, V., Ronkainen, J., Mancano, G., Howe, C. G., … Sebert, S. (2023, December 5). Maternal educational attainment in pregnancy and epigenome-wide DNA methylation changes in the offspring from birth until adolescence. MOLECULAR PSYCHIATRY, Vol. 12. https://doi.org/10.1038/s41380-023-02331-5 Zhou, Y.-H., Gallins, P. J., Etheridge, A. S., Jima, D., Scholl, E., Wright, F. A., & Innocenti, F. (2022). A resource for integrated genomic analysis of the human liver. SCIENTIFIC REPORTS, 12(1). https://doi.org/10.1038/s41598-022-18506-z Moylan, C. A., Mavis, A. M., Jima, D., Maguire, R., Bashir, M., Hyun, J., … Hoyo, C. (2022, February 23). Alterations in DNA methylation associate with fatty liver and metabolic abnormalities in a multi-ethnic cohort of pre-teenage children. EPIGENETICS, Vol. 2. https://doi.org/10.1080/15592294.2022.2039850 Ligaba-Osena, A., Salehin, M., Numan, M., Wang, X., Choi, S.-C., Jima, D., … Guo, W. (2022). Genome-wide transcriptome analysis of the orphan crop tef (Eragrostis tef (Zucc.) Trotter) under long-term low calcium stress. Scientific Reports, 12(1). https://doi.org/10.1038/s41598-022-23844-z Jima, D. D., Skaar, D. A., Planchart, A., Motsinger-Reif, A., Cevik, S. E., Park, S. S., … Hoyo, C. (2022, June 25). Genomic map of candidate human imprint control regions: the imprintome. EPIGENETICS, Vol. 6. https://doi.org/10.1080/15592294.2022.2091815 Harlow, C. E., Gandawijaya, J., Bamford, R. A., Martin, E.-R., Wood, A. R., Most, P. J., … Frayling, T. M. (2022). Identification and single-base gene-editing functional validation of a cis-EPO variant as a genetic predictor for EPO-increasing therapies. AMERICAN JOURNAL OF HUMAN GENETICS, 109(9), 1638–1652. https://doi.org/10.1016/j.ajhg.2022.08.004 Solomon, O., Huen, K., Yousefi, P., Kupers, L. K., Gonzalez, J. R., Suderman, M., … Holland, N. (2022). [Review of Meta-analysis of epigenome-wide association studies in newborns and children show widespread sex differences in blood DNA methylation]. MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH, 789. https://doi.org/10.1016/j.mrrev.2022.108415 Orr, S. E., Collins, L. B., Jima, D. D., & Buchwalter, D. B. (2023). Salinity-induced ionoregulatory changes in the gill proteome of the mayfly, Neocloeon triangulifer. ENVIRONMENTAL POLLUTION, 316. https://doi.org/10.1016/j.envpol.2022.120609 Watson, A. L. T. D., Carmona Baez, A., Jima, D., Reif, D., Ding, J., Roberts, R., & Kullman, S. W. (2022, November 12). TCDD alters essential transcriptional regulators of osteogenic differentiation in multipotent mesenchymal stem cells. TOXICOLOGICAL SCIENCES, Vol. 11. https://doi.org/10.1093/toxsci/kfac120 Riegl, S. D., Starnes, C., Jima, D. D., Baptissart, M., Diehl, A. M., Belcher, S. M., & Cowley, M. (2022, October 6). The imprinted gene Zac1 regulates steatosis in developmental cadmium-induced nonalcoholic fatty liver disease. TOXICOLOGICAL SCIENCES, Vol. 10. https://doi.org/10.1093/toxsci/kfac106 Baptissart, M., Bradish, C. M., Jones, B. S., Walsh, E., Tehrani, J., Marrero-Colon, V., … Cowley, M. (2022, February 28). Zac1 and the Imprinted Gene Network program juvenile NAFLD in response to maternal metabolic syndrome. HEPATOLOGY, Vol. 2. https://doi.org/10.1002/hep.32363 Bosire, C., Vidal, A. C., Smith, J. S., Jima, D., Huang, Z., Skaar, D., … Hoyo, C. (2021). Association between PEG3 DNA methylation and high-grade cervical intraepithelial neoplasia. INFECTIOUS AGENTS AND CANCER, 16(1). https://doi.org/10.1186/s13027-021-00382-3 Hudson, K. M., Shiver, E., Yu, J., Mehta, S., Jima, D. D., Kane, M. A., … Cowley, M. (2021). Transcriptomic, proteomic, and metabolomic analyses identify candidate pathways linking maternal cadmium exposure to altered neurodevelopment and behavior. SCIENTIFIC REPORTS, 11(1). https://doi.org/10.1038/s41598-021-95630-2 Neumann, A., Walton, E., Alemany, S., Cecil, C., Gonzalez, J. R., Jima, D. D., … Tiemeier, H. (2020). Association between DNA methylation and ADHD symptoms from birth to school age: a prospective meta-analysis. TRANSLATIONAL PSYCHIATRY, 10(1). https://doi.org/10.1038/s41398-020-01058-z Vehmeijer, F. O. L., Kuepers, L. K., Sharp, G. C., Salas, L. A., Lent, S., Jima, D. D., … Felix, J. F. (2020). DNA methylation and body mass index from birth to adolescence: meta-analyses of epigenome-wide association studies. GENOME MEDICINE, 12(1). https://doi.org/10.1186/s13073-020-00810-w Rock, K. D., St Armour, G., Horman, B., Phillips, A., Ruis, M., Stewart, A. K., … Patisaul, H. B. (2020). Effects of Prenatal Exposure to a Mixture of Organophosphhate Flame Ritardants on Placental Gene Expression and Serotonergic Innervaion in the Fetal Rat Brain. TOXICOLOGICAL SCIENCES, 176(1), 203–223. https://doi.org/10.1093/toxsci/kfaa046 Shafiee-Kermani, F., Carney, S. T., Jima, D., Utin, U. C., Farrar, L. N. B., Oputa, M. O., … Grant, D. J. (2020). Expression of UDP Glucuronosyltransferases2B15and2B17is associated with methylation status in prostate cancer cells. EPIGENETICS. https://doi.org/10.1080/15592294.2020.1795601 Chou, H., Jima, D. D., Funk, D. H., Jackson, J. K., Sweeney, B. W., & Buchwalter, D. B. (2020). Transcriptomic and life history responses of the mayfly Neocloeon triangulifer to chronic diel thermal challenge. SCIENTIFIC REPORTS, 10(1). https://doi.org/10.1038/s41598-020-75064-y Knuth, M. M., Mahapatra, D., Jima, D., Wan, D., Hammock, B. D., Law, M., & Kullman, S. W. (2020). Vitamin D deficiency serves as a precursor to stunted growth and central adiposity in zebrafish. SCIENTIFIC REPORTS, 10(1). https://doi.org/10.1038/s41598-020-72622-2 Etheridge, A. S., Gallins, P. J., Jima, D., Broadaway, K. A., Ratain, M. J., Schuetz, E., … Innocenti, F. (2020). A New Liver Expression Quantitative Trait Locus Map From 1,183 Individuals Provides Evidence for Novel Expression Quantitative Trait Loci of Drug Response, Metabolic, and Sex-Biased Phenotypes. CLINICAL PHARMACOLOGY & THERAPEUTICS, 107(6), 1383–1393. https://doi.org/10.1002/cpt.1751 Tam, H. W., Hall, J. R., Messenger, Z. J., Jima, D. D., House, J. S., Linder, K., & Smart, R. C. (2019). C/EBP beta suppresses keratinocyte autonomous type 1 IFN response and p53 to increase cell survival and susceptibility to UVB-induced skin cancer. CARCINOGENESIS, 40(9), 1099–1109. https://doi.org/10.1093/carcin/bgz012 Martin, C. L., Jima, D., Sharp, G. C., McCullough, L. E., Park, S. S., Gowdy, K. M., … Hoyo, C. (2019). Maternal pre-pregnancy obesity, offspring cord blood DNA methylation, and offspring cardiometabolic health in early childhood: an epigenome-wide association study. EPIGENETICS, 14(4), 325–340. https://doi.org/10.1080/15592294.2019.1581594 Frayling, T. M., Beaumont, R. N., Jones, S. E., Yaghootkar, H., Tuke, M. A., Ruth, K. S., … Zhou, Y. H. (2018). A common allele in FGF21 associated with sugar intake is associated with body shape, lower total body-fat percentage, and higher blood pressure. Cell Reports, 23(2), 327–336. Messenger, Z. J., Hall, J. R., Jima, D. D., House, J. S., Tam, H. W., Tokarz, D. A., & Smart, R. C. (2018). C/EBPβ deletion in oncogenic Ras skin tumors is a synthetic lethal event. Cell Death & Disease, 9(11). https://doi.org/10.1038/s41419-018-1103-y Felix, J. F., Joubert, B. R., Baccarelli, A. A., Sharp, G. C., Almqvist, C., Annesi-Maesano, I., … Brunst, K. J. (2018). Cohort profile: Pregnancy and childhood epigenetics (PACE) consortium. International Journal of Epidemiology, 47(1), 22-. Rock, K. D., Horman, B., Phillips, A. L., McRitchie, S. L., Watson, S., Deese-Spruill, J., … al. (2018). EDC IMPACT: Molecular effects of developmental FM 550 exposure in Wistar rat placenta and fetal forebrain. ENDOCRINE CONNECTIONS, 7(2), 305–324. https://doi.org/10.1530/ec-17-0373 Cowley, M., Skaar, D. A., Jima, D. D., Maguire, R. L., Hudson, K. M., Park, S. S., … Hoyo, C. (2018). Effects of cadmium exposure on DNA methylation at imprinting control regions and genome-wide in mothers and newborn children. Environmental Health Perspectives, 126(3). Reese, S. E., Xu, C.-J., Dekker, H. T., Lee, M. K., Sikdar, S., Ruiz-Arenas, C., … London, S. J. (2019). Epigenome-wide meta-analysis of DNA methylation and childhood asthma. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 143(6), 2062–2074. https://doi.org/10.1016/j.jaci.2018.11.043 Li, G., Jima, D., Wright, F. A., & Nobel, A. B. (2018). HT-eQTL: integrative expression quantitative trait loci analysis in a large number of human tissues. BMC Bioinformatics, 19. Chou, H., Pathmasiri, W., Deese-spruill, J., Sumner, S. J., Jima, D. D., Funk, D. H., … Buchwalter, D. B. (2018). The Good, the Bad, and the Lethal: Gene Expression and Metabolomics Reveal Physiological Mechanisms Underlying Chronic Thermal Effects in Mayfly Larvae (Neocloeon triangulifer). FRONTIERS IN ECOLOGY AND EVOLUTION, 6(MAR). https://doi.org/10.3389/fevo.2018.00027 House, J. S., Grimm, F. A., Jima, D. D., Zhou, Y. H., Rusyn, I., & Wright, F. A. (2017). A Pipeline for high-throughput concentration response modeling of gene expression for toxicogenomics. Frontiers in Genetics, 8. Tokarz, D. A., Heffelfinger, A. K., Jima, D. D., Gerlach, J., Shah, R. N., Rodriguez-Nunez, I., … Yoder, J. A. (2017). Disruption of Trim9 function abrogates macrophage motility in vivo. Journal of Leukocyte Biology, 102(6), 1371–1380. https://doi.org/10.1189/jlb.1a0816-371r Arambula, S. E., Jima, D., & Patisaul, H. B. (2018). Prenatal bisphenol A (BPA) exposure alters the transcriptome of the neonate rat amygdala in a sex-specific manner: a CLARITY-BPA consortium study. NEUROTOXICOLOGY, 65, 207–220. https://doi.org/10.1016/j.neuro.2017.10.005 Lee, S., Ward, T. J., Jima, D. D., Parsons, C., & Kathariou, S. (2017). The Arsenic Resistance-Associated Listeria Genomic Island LGI2 Exhibits Sequence and Integration Site Diversity and a Propensity for Three Listeria monocytogenes Clones with Enhanced Virulence. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(21). https://doi.org/10.1128/aem.01189-17 Reaves, D. K., Hoadley, K. A., Fagan-Solis, K. D., Jima, D. D., Bereman, M., Thorpe, L., … Fleming, J. M. (2017). Nuclear Localized LSR: A Novel Regulator of Breast Cancer Behavior and Tumorigenesis. MOLECULAR CANCER RESEARCH, 15(2), 165–178. https://doi.org/10.1158/1541-7786.mcr-16-0085-t Jima, D. D., Shah, R. N., Orcutt, T. M., Joshi, D., Law, J. M. H., Litman, G. W., … Yoder, J. A. (2009). Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity. Molecular Immunology, 46(7), 1505–1516. https://doi.org/10.1016/j.molimm.2008.12.021