Durreshahwar Muhammad

Works (3)

Updated: November 27th, 2023 08:06

2022 article

POPEYE intercellular localization mediates cell-specific iron deficiency responses

Muhammad, D. S., Clark, N. M., Haque, S., Williams, C. M., Sozzani, R., & Long, T. A. (2022, August 3). PLANT PHYSIOLOGY, Vol. 8.

By: D. Muhammad n, N. Clark n, S. Haque n, C. Williams n , R. Sozzani  n & T. Long n 

MeSH headings : Iron Deficiencies; Arabidopsis Proteins / metabolism; Gene Expression Regulation, Plant; Basic Helix-Loop-Helix Transcription Factors / metabolism; Arabidopsis / metabolism; Iron / metabolism; Plant Roots / genetics; Plant Roots / metabolism
TL;DR: The findings indicate that PYE acts as a positive regulator of iron deficiency response by regulating iron bioavailability differentially across cells, which may trigger iron uptake from the surrounding rhizosphere and impact root energy metabolism. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 13, 2022

2017 review

More than meets the eye: Emergent properties of transcription factors networks in Arabidopsis

[Review of ]. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 1860(1), 64–74.

By: D. Muhammad n, S. Schmittling n, C. Williams n  & T. Long n 

Contributors: D. Muhammad n, S. Schmittling n, C. Williams n  & T. Long n 

author keywords: Transcription factor networks (TFNs); Emergent properties; Mathematical modeling
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Computational Biology / methods; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Plant Development / genetics; Stress, Physiological / genetics; Transcription Factors / genetics
TL;DR: This review highlights literature that provides, in part, experimental and computational techniques for characterizing Transcription Factor Networks and outlines methodologies that have been used to mathematically model the dynamic characteristics of TFNs. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: August 6, 2018

2015 journal article

Clustering and Differential Alignment Algorithm: Identification of Early Stage Regulators in the Arabidopsis thaliana Iron Deficiency Response

PLOS ONE, 10(8).

By: A. Koryachko n, A. Matthiadis n, D. Muhammad n, J. Foret *, S. Brady *, J. Ducoste n , J. Tuck n , T. Long n , C. Williams n 

Contributors: A. Koryachko n, A. Matthiadis n, D. Muhammad n, J. Foret *, S. Brady *, J. Ducoste n , J. Tuck n , T. Long n , C. Williams n 

MeSH headings : Algorithms; Arabidopsis / genetics; Arabidopsis / metabolism; Databases, Genetic; Gene Expression Regulation, Plant; Iron Deficiencies; Sequence Alignment; Software; Transcriptome
TL;DR: It is proposed that this tool can be used successfully for similar time course datasets to extract additional information and infer reliable regulatory connections for individual genes, and served as a proof of concept emphasizing the utility of the CDAA for identifying unknown or missing nodes in regulatory cascades. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries, ORCID
Added: August 6, 2018

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