Works (3)
Updated: February 21st, 2024 05:03
2024 journal article
Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing
MSystems.
Ed(s): M. Langille
author keywords: serotyping; food-borne pathogens; Salmonella; Escherichia coli; 16S rRNA; long-read sequencing
topics (OpenAlex): Salmonella and Campylobacter epidemiology; Enterobacteriaceae and Cronobacter Research; Probiotics and Fermented Foods
TL;DR:
A new computational technology is developed that allows the important foodborne pathogens Escherichia coli and Salmonella enterica to be serotyped (a subspecies level classification) from sequencing of a single-marker gene, and the 16S rRNA gene often used to surveil bacterial communities.
(via Semantic Scholar)
open access via doi.org (publisher)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: February 7, 2024
2021 journal article
Ultra-accurate microbial amplicon sequencing with synthetic long reads
Microbiome, 9(1).
author keywords: Synthetic long reads; Amplicon sequencing; Metagenomics; Long-read sequencing
MeSH headings : High-Throughput Nucleotide Sequencing; Metagenome; Microbiota / genetics; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA
topics (OpenAlex): Genomics and Phylogenetic Studies; Identification and Quantification in Food; Molecular Biology Techniques and Applications
TL;DR:
L loopSeq full-length 16S rRNA reads could accurately classify organisms down to the species level in rinsate from retail meat samples, and could differentiate strains within species identified by the CDC as potential foodborne pathogens.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: June 6, 2021
2021 journal article
Warm nights disrupt transcriptome rhythms in field-grown rice panicles
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(25).
author keywords: climate change impact; nighttime temperature increase; global food security; diel transcriptional networks
MeSH headings : Agriculture; Biomass; Circadian Rhythm / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Regulatory Networks; Genes, Plant; Oryza / genetics; Oryza / growth & development; RNA, Messenger / genetics; RNA, Messenger / metabolism; Reproducibility of Results; Temperature; Time Factors; Transcription Factors / metabolism; Transcription, Genetic; Transcriptome / genetics
topics (OpenAlex): Light effects on plants; Plant Molecular Biology Research; Circadian rhythm and melatonin
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: June 22, 2021