Dmitry Grinevich

Works (3)

Updated: February 21st, 2024 05:03

2024 article

Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing

Grinevich, D., Harden, L., Thakur, S., & Callahan, B. (2024, February 6). (M. G. I. Langille, Ed.). MSYSTEMS, Vol. 2.

By: D. Grinevich n, L. Harden n, S. Thakur n  & B. Callahan n 

Ed(s): M. Langille

author keywords: serotyping; food-borne pathogens; Salmonella; Escherichia coli; 16S rRNA; long-read sequencing
TL;DR: A new computational technology is developed that allows the important foodborne pathogens Escherichia coli and Salmonella enterica to be serotyped (a subspecies level classification) from sequencing of a single-marker gene, and the 16S rRNA gene often used to surveil bacterial communities. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: February 7, 2024

2021 journal article

Ultra-accurate microbial amplicon sequencing with synthetic long reads

MICROBIOME, 9(1).

By: B. Callahan n , D. Grinevich n, S. Thakur n , M. Balamotis & T. Ben Yehezkel

author keywords: Synthetic long reads; Amplicon sequencing; Metagenomics; Long-read sequencing
MeSH headings : High-Throughput Nucleotide Sequencing; Metagenome; Microbiota / genetics; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA
TL;DR: L loopSeq full-length 16S rRNA reads could accurately classify organisms down to the species level in rinsate from retail meat samples, and could differentiate strains within species identified by the CDC as potential foodborne pathogens. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID
Added: June 6, 2021

2021 journal article

Warm nights disrupt transcriptome rhythms in field-grown rice panicles

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(25).

By: J. Desai n, L. Lawas *, A. Valente, A. Leman, D. Grinevich n, S. Jagadish *, C. Doherty n 

author keywords: climate change impact; nighttime temperature increase; global food security; diel transcriptional networks
MeSH headings : Agriculture; Biomass; Circadian Rhythm / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Regulatory Networks; Genes, Plant; Oryza / genetics; Oryza / growth & development; RNA, Messenger / genetics; RNA, Messenger / metabolism; Reproducibility of Results; Temperature; Time Factors; Transcription Factors / metabolism; Transcription, Genetic; Transcriptome / genetics
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: June 22, 2021

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