@article{mckenney_2023, title={The Human Gut Microbiome}, url={https://doi.org/10.52750/219830}, DOI={10.52750/219830}, author={McKenney, Erin}, year={2023}, month={Jan} }
 @article{shoaf_french_clifford_mckenney_ott_2022, title={A gut microbiome tactile teaching tool and guided-inquiry activity promotes student learning}, volume={13}, ISSN={["1664-302X"]}, DOI={10.3389/fmicb.2022.966289}, journal={FRONTIERS IN MICROBIOLOGY}, author={Shoaf, Parker T. and French, Katie S. and Clifford, Noah J. and McKenney, Erin A. and Ott, Laura E.}, year={2022}, month={Dec} }
 @article{trujillo_mckenney_hilderbrand_mangipane_rogers_joly_gustine_erlenbach_mangipane_lafferty_2022, title={Correlating gut microbial membership to brown bear health metrics}, volume={12}, ISSN={["2045-2322"]}, DOI={10.1038/s41598-022-19527-4}, number={1}, journal={SCIENTIFIC REPORTS}, author={Trujillo, Sarah M. and McKenney, Erin A. and Hilderbrand, Grant V and Mangipane, Lindsey S. and Rogers, Matthew C. and Joly, Kyle and Gustine, David D. and Erlenbach, Joy A. and Mangipane, Buck A. and Lafferty, Diana J. R.}, year={2022}, month={Sep} }
 @article{trujillo_mckenney_hilderbrand_mangipane_rogers_joly_gustine_erlenbach_mangipane_lafferty_2022, title={Intrinsic and extrinsic factors influence on an omnivore's gut microbiome}, volume={17}, ISSN={["1932-6203"]}, url={https://doi.org/10.1371/journal.pone.0266698}, DOI={10.1371/journal.pone.0266698}, number={4}, journal={PLOS ONE}, publisher={Public Library of Science (PLoS)}, author={Trujillo, Sarah M. and McKenney, Erin A. and Hilderbrand, Grant V and Mangipane, Lindsey S. and Rogers, Matthew C. and Joly, Kyle and Gustine, David D. and Erlenbach, Joy A. and Mangipane, Buck A. and Lafferty, Diana J. R.}, editor={Gorokhova, ElenaEditor}, year={2022} }
 @article{lafferty_gillman_jeakle_roell_mckenney_2022, title={Mink (Neovison vison) fecal microbiomes are influenced by sex, temperature, and time postdefecation}, volume={103}, ISSN={["1545-1542"]}, DOI={10.1093/jmammal/gyab140}, number={2}, journal={JOURNAL OF MAMMALOGY}, author={Lafferty, Diana J. R. and Gillman, Sierra J. and Jeakle, Lane K. and Roell, Brian J. and McKenney, Erin A.}, year={2022}, month={Apr}, pages={316–327} }
 @article{lafferty_mckenney_gillman_kailing_walimaa_kailing_roell_2022, title={The gut microbiome of wild American marten in the Upper Peninsula of Michigan}, volume={17}, ISSN={["1932-6203"]}, DOI={10.1371/journal.pone.0275850}, number={11}, journal={PLOS ONE}, author={Lafferty, Diana J. R. and McKenney, Erin A. and Gillman, Sierra J. and Kailing, Chris D. and Walimaa, Myles C. and Kailing, Macy J. and Roell, Brian J.}, year={2022}, month={Nov} }
 @article{calvert_madden_nichols_haddad_lahne_dunn_mckenney_2021, title={A review of sourdough starters: ecology, practices, and sensory quality with applications for baking and recommendations for future research}, volume={5}, url={https://doi.org/10.7717/peerj.11389}, DOI={10.7717/peerj.11389}, journal={PEERJ}, author={Calvert, Martha D. and Madden, Anne A. and Nichols, Lauren M. and Haddad, Nick M. and Lahne, Jacob and Dunn, Robert R. and McKenney, Erin A.}, year={2021}, month={May} }
 @article{eschweiler_clayton_moresco_mckenney_minter_suhr van haute_gasper_hayer_zhu_cooper_et al._2021, title={Host Identity and Geographic Location Significantly Affect Gastrointestinal Microbial Richness and Diversity in Western Lowland Gorillas (Gorilla gorilla gorilla) under Human Care}, volume={11}, ISSN={2076-2615}, url={http://dx.doi.org/10.3390/ani11123399}, DOI={10.3390/ani11123399}, abstractNote={The last few decades have seen an outpouring of gastrointestinal (GI) microbiome studies across diverse host species. Studies have ranged from assessments of GI microbial richness and diversity to classification of novel microbial lineages. Assessments of the “normal” state of the GI microbiome composition across multiple host species has gained increasing importance for distinguishing healthy versus diseased states. This study aimed to determine baselines and trends over time to establish “typical” patterns of GI microbial richness and diversity, as well as inter-individual variation, in three populations of western lowland gorillas (Gorilla gorilla gorilla) under human care at three zoological institutions in North America. Fecal samples were collected from 19 western lowland gorillas every two weeks for seven months (n = 248). Host identity and host institution significantly affected GI microbiome community composition (p < 0.05), although host identity had the most consistent and significant effect on richness (p = 0.03) and Shannon diversity (p = 0.004) across institutions. Significant changes in microbial abundance over time were observed only at Denver Zoo (p < 0.05). Our results suggest that individuality contributes to most of the observed GI microbiome variation in the study populations. Our results also showed no significant changes in any individual’s microbial richness or Shannon diversity during the 7-month study period. While some microbial taxa (Prevotella, Prevotellaceae and Ruminococcaceae) were detected in all gorillas at varying levels, determining individual baselines for microbial composition comparisons may be the most useful diagnostic tool for optimizing non-human primate health under human care.}, number={12}, journal={Animals}, publisher={MDPI AG}, author={Eschweiler, Katrina and Clayton, Jonathan B. and Moresco, Anneke and McKenney, Erin A. and Minter, Larry J. and Suhr Van Haute, Mallory J. and Gasper, William and Hayer, Shivdeep Singh and Zhu, Lifeng and Cooper, Kathryn and et al.}, year={2021}, month={Nov}, pages={3399} }
 @article{gillman_mckenney_lafferty_2021, title={Human-provisioned foods reduce gut microbiome diversity in American black bears (Ursus americanus)}, volume={12}, ISSN={["1545-1542"]}, DOI={10.1093/jmammal/gyab154}, journal={JOURNAL OF MAMMALOGY}, author={Gillman, Sierra J. and McKenney, Erin A. and Lafferty, Diana J. R.}, year={2021}, month={Dec} }
 @article{landis_oliverio_mckenney_nichols_kfoury_biango-daniels_shell_madden_shapiro_sakunala_et al._2021, title={The diversity and function of sourdough starter microbiomes}, volume={10}, ISSN={["2050-084X"]}, url={https://doi.org/10.7554/eLife.61644}, DOI={10.7554/eLife.61644}, journal={ELIFE}, author={Landis, Elizabeth A. and Oliverio, Angela M. and McKenney, Erin A. and Nichols, Lauren M. and Kfoury, Nicole and Biango-Daniels, Megan and Shell, Leonora K. and Madden, Anne A. and Shapiro, Lori and Sakunala, Shravya and et al.}, year={2021}, month={Jan} }
 @article{gillman_mckenney_lafferty_2020, title={Wild black bears harbor simple gut microbial communities with little difference between the jejunum and colon}, volume={10}, ISSN={["2045-2322"]}, url={https://doi.org/10.1038/s41598-020-77282-w}, DOI={10.1038/s41598-020-77282-w}, number={1}, journal={SCIENTIFIC REPORTS}, author={Gillman, Sierra J. and McKenney, Erin A. and Lafferty, Diana J. R.}, year={2020}, month={Dec} }
 @article{finn_scheuermann_holzknecht_gao_ibrahim_parker_granek_lin_mckenney_barbas_2019, title={The effect of levofloxacin on the lung microbiota of laboratory rats}, volume={45}, ISSN={["1521-0499"]}, DOI={10.1080/01902148.2019.1639225}, number={7}, journal={EXPERIMENTAL LUNG RESEARCH}, author={Finn, Sade M. B. and Scheuermann, Uwe and Holzknecht, Zoie E. and Gao, Qimeng and Ibrahim, Mohamed M. and Parker, William and Granek, Joshua A. and Lin, Shu S. and McKenney, Erin A. and Barbas, Andrew S.}, year={2019}, month={Aug}, pages={200–208} }
 @misc{greene_bornbusch_mckenney_harris_gorvetzian_yoder_drea_2019, title={The importance of scale in comparative microbiome research: New insights from the gut and glands of captive and wild lemurs}, volume={81}, ISSN={["1098-2345"]}, DOI={10.1002/ajp.22974}, number={10-11}, journal={AMERICAN JOURNAL OF PRIMATOLOGY}, author={Greene, Lydia K. and Bornbusch, Sally L. and McKenney, Erin A. and Harris, Rachel L. and Gorvetzian, Sarah R. and Yoder, Anne D. and Drea, Christine M.}, year={2019}, month={Oct} }
 @article{finn_scheuermann_holzknecht_parker_granek_lin_mckenney_barbas_2018, title={Effect of gastric fluid aspiration on the lung microbiota of laboratory rats}, volume={44}, DOI={10.1080/01902148.2018.1482976}, number={4-5}, journal={EXPERIMENTAL LUNG RESEARCH}, author={Finn, Sade M. B. and Scheuermann, Uwe and Holzknecht, Zoie E. and Parker, William and Granek, Joshua A. and Lin, Shu S. and McKenney, Erin and Barbas, Andrew S.}, year={2018}, pages={201–210} }
 @article{greene_mckenney_o’connell_drea_2018, title={The critical role of dietary foliage in maintaining the gut microbiome and metabolome of folivorous sifakas}, volume={8}, DOI={10.1038/s41598-018-32759-7}, number={1}, journal={Scientific Reports}, publisher={Springer Nature America, Inc}, author={Greene, Lydia K. and McKenney, Erin A. and O’Connell, Thomas M. and Drea, Christine M.}, year={2018}, month={Sep} }
 @article{mckenney_koelle_dunn_yoder_2018, title={The ecosystem services of animal microbiomes}, volume={27}, ISSN={["1365-294X"]}, url={https://doi.org/10.1111/mec.14532}, DOI={10.1111/mec.14532}, number={8}, journal={MOLECULAR ECOLOGY}, publisher={Wiley-Blackwell}, author={McKenney, E. A. and Koelle, K. and Dunn, R. R. and Yoder, A. D.}, year={2018}, month={Apr}, pages={2164–2172} }
 @article{greene_mckenney_2018, title={The inside tract: The appendicular, cecal, and colonic microbiome of captive aye-ayes}, volume={166}, DOI={10.1002/ajpa.23481}, number={4}, journal={American Journal of Physical Anthropology}, publisher={Wiley}, author={Greene, Lydia K. and McKenney, Erin A.}, year={2018}, month={Apr}, pages={960–967} }
 @article{bamboo specialists from two mammalian orders (primates, carnivora) share a high number of low-abundance gut microbes._2017, volume={11}, url={http://europepmc.org/abstract/med/29188302}, DOI={10.1007/s00248-017-1114-8}, journal={Microbial ecology}, year={2017}, month={Nov} }
 @article{down for the count: cryptosporidium infection depletes the gut microbiome in coquerel's sifakas._2017, url={http://europepmc.org/abstract/med/28740461}, DOI={10.1080/16512235.2017.1335165}, journal={Microbial ecology in health and disease}, year={2017} }
 @article{evolution of the hygiene hypothesis into biota alteration theory: what are the paradigms and where are the clinical applications?_2017, volume={11}, url={http://europepmc.org/abstract/med/29133248}, DOI={10.1016/j.micinf.2017.11.001}, journal={Microbes and infection}, year={2017}, month={Nov} }
 @article{feeding strategy shapes gut metagenomic enrichment and functional specialization in captive lemurs._2017, volume={11}, url={http://europepmc.org/abstract/med/29182421}, DOI={10.1080/19490976.2017.1408762}, journal={Gut microbes}, year={2017}, month={Nov} }
 @article{williamson_mckenney_holzknecht_belliveau_rawls_poulton_parker_bilbo_2016, title={Got worms? Perinatal exposure to helminths prevents persistent immune sensitization and cognitive dysfunction induced by early-life infection}, volume={51}, DOI={10.1016/j.bbi.2015.07.006}, journal={Brain, Behavior, and Immunity}, publisher={Elsevier BV}, author={Williamson, Lauren L. and McKenney, Erin A. and Holzknecht, Zoie E. and Belliveau, Christine and Rawls, John F. and Poulton, Susan and Parker, William and Bilbo, Staci D.}, year={2016}, month={Jan}, pages={14–28} }
 @article{mckenney_dunn_urban_stalls_millis_flythe_stevens_2016, title={Symbiosis in the Soil: Citizen Microbiology in Middle and High School Classrooms †}, volume={17}, ISSN={1935-7877 1935-7885}, url={http://dx.doi.org/10.1128/jmbe.v17i1.1016}, DOI={10.1128/jmbe.v17i1.1016}, number={1}, journal={Journal of Microbiology & Biology Education}, publisher={American Society for Microbiology}, author={McKenney, Erin and Dunn, Robert R. and Urban, Julie M. and Stalls, Jennifer and Millis, Courtney and Flythe, Taylar and Stevens, Julia L.}, year={2016}, month={Mar}, pages={60–62} }
 @article{mckenney_williamson_yoder_rawls_bilbo_parker_2015, title={Alteration of the rat cecal microbiome during colonization with the helminthHymenolepis diminuta}, volume={6}, DOI={10.1080/19490976.2015.1047128}, number={3}, journal={Gut Microbes}, publisher={Informa UK Limited}, author={McKenney, Erin A and Williamson, Lauren and Yoder, Anne D and Rawls, John F and Bilbo, Staci D and Parker, William}, year={2015}, month={May}, pages={182–193} }
 @article{mckenney_rodrigo_yoder_2015, title={Patterns of Gut Bacterial Colonization in Three Primate Species}, volume={10}, DOI={10.1371/journal.pone.0124618}, number={5}, journal={PLOS ONE}, publisher={Public Library of Science (PLoS)}, author={McKenney, Erin A. and Rodrigo, Allen and Yoder, Anne D.}, editor={Heimesaat, Markus M.Editor}, year={2015}, month={May}, pages={e0124618} }
 @article{lambert_fellner_mckenney_hartstone-rose_2014, title={Binturong (Arctictis binturong) and Kinkajou (Potos flavus) Digestive Strategy: Implications for Interpreting Frugivory in Carnivora and Primates}, volume={9}, ISSN={1932-6203}, url={http://dx.doi.org/10.1371/journal.pone.0105415}, DOI={10.1371/journal.pone.0105415}, number={8}, journal={PLoS ONE}, publisher={Public Library of Science (PLoS)}, author={Lambert, Joanna E. and Fellner, Vivek and McKenney, Erin and Hartstone-Rose, Adam}, editor={Taylor, Andrea B.Editor}, year={2014}, month={Aug}, pages={e105415} }
 @article{mckenney_ashwell_lambert_fellner_2014, title={Fecal microbial diversity and putative function in captive western lowland gorillas (Gorilla gorilla gorilla), common chimpanzees (Pan troglodytes), Hamadryas baboons (Papio hamadryas) and binturongs (Arctictis binturong)}, volume={9}, ISSN={["1749-4869"]}, DOI={10.1111/1749-4877.12112}, number={5}, journal={INTEGRATIVE ZOOLOGY}, publisher={Wiley-Blackwell}, author={McKenney, Erin A. and Ashwell, Melissa and Lambert, Joanna E. and Fellner, Vivek}, year={2014}, month={Nov}, pages={557–569} }