Works (42)

Updated: July 25th, 2023 21:17

2016 personal communication

Bias-Variance Tradeoffs in Recombination Rate Estimation

Stone, E. A., & Singh, N. D. (2016, February).

By: E. Stone n & N. Singh n

co-author countries: United States of America 🇺🇸
MeSH headings : Alleles; Animals; Bias; Drosophila melanogaster / genetics; Gene Frequency; Genetic Variation; Models, Genetic; Models, Statistical; Recombination, Genetic
Source: Web Of Science
Added: August 6, 2018

2016 journal article

Sporadic, Global Linkage Disequilibrium Between Unlinked Segregating Sites

GENETICS, 202(2), 427-+.

By: D. Skelly*, P. Magwene* & E. Stone n

co-author countries: United States of America 🇺🇸
author keywords: linkage disequilibrium; genome-wide association study; genetically indistinguishable
MeSH headings : Algorithms; Alleles; Animals; Arabidopsis / genetics; Computer Simulation; Drosophila / genetics; Genetic Linkage; Genetic Loci; Genetic Variation; Genetics, Population; Genome-Wide Association Study; Linkage Disequilibrium; Models, Genetic; Models, Statistical; Polymorphism, Single Nucleotide
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Enhanced diversity and aflatoxigenicity in interspecific hybrids ofAspergillus flavusandAspergillus parasiticus

Molecular Ecology, 24(8), 1889–1909.

By: R. Olarte n, C. Worthington n, B. Horn*, G. Moore*, R. Singh n, J. Monacell n, J. Dorner*, E. Stone n, D. Xie n, I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: allopolyploid; array comparative genome hybridization; flow cytometry; meiosis; population
MeSH headings : Aflatoxins / biosynthesis; Aspergillus / classification; Aspergillus / genetics; Aspergillus flavus / genetics; Comparative Genomic Hybridization; Genes, Mating Type, Fungal; Genotype; Genotyping Techniques; Hybridization, Genetic; Molecular Sequence Data; Phenotype; Phylogeny; Sequence Analysis, DNA; Sterigmatocystin / analogs & derivatives; Sterigmatocystin / biosynthesis
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 review

Recent progress and open questions in Drosophila dosage compensation

[Review of ]. FLY, 9(1), 29–35.

By: S. Vensko n & E. Stone n

co-author countries: United States of America 🇺🇸
author keywords: chromatin; dosage compensation; Drosophila; epigenetics; male-specific lethal; MSL complex; review
MeSH headings : Animals; Biological Evolution; Dosage Compensation, Genetic; Drosophila melanogaster / genetics; Drosophila melanogaster / metabolism; Sex Chromosomes
Source: Web Of Science
Added: August 6, 2018

2015 journal article

The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen

GENOME RESEARCH, 25(5), 762–774.

By: P. Strope*, D. Skelly*, S. Kozmin*, G. Mahadevan*, E. Stone n, P. Magwene*, F. Dietrich*, J. McCusker*

co-author countries: United States of America 🇺🇸
MeSH headings : Contig Mapping / methods; Genome, Fungal; Genotype; Phenotype; Phylogeny; Polymorphism, Genetic; Saccharomyces cerevisiae / classification; Saccharomyces cerevisiae / genetics; Saccharomyces cerevisiae / pathogenicity; Sequence Alignment / methods; Virulence / genetics
Source: Web Of Science
Added: August 6, 2018

2015 journal article

X-to-autosome expression and msl-2 transcript abundance correlate among Drosophila melanogaster somatic tissues

PEERJ, 3.

By: S. Vensko n & E. Stone n

co-author countries: United States of America 🇺🇸
author keywords: H4K16Ac; Male-Specific Lethal complex; Drosophila melanogaster; Dosage compensation complex; Dosage compensation
Source: Web Of Science
Added: August 6, 2018

2014 journal article

Genome-wide analysis in Drosophila reveals age-specific effects of SNPs on fitness traits

NATURE COMMUNICATIONS, 5.

By: M. Durham*, M. Magwire n, E. Stone n & J. Leips*

co-author countries: United States of America 🇺🇸
MeSH headings : Aging / physiology; Animals; Drosophila melanogaster / genetics; Female; Fertility / genetics; Gene Ontology; Genetic Fitness / genetics; Genome-Wide Association Study; Male; Mutation; Polymorphism, Single Nucleotide
Source: Web Of Science
Added: August 6, 2018

2014 journal article

Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines

Genome Research, 24(7), 1193–1208.

By: W. Huang, A. Massouras, Y. Inoue, J. Peiffer, M. Ramia, A. Tarone, L. Turlapati, T. Zichner ...

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

No Evidence for a Global Male-Specific Lethal Complex-Mediated Dosage Compensation Contribution to the Demasculinization of the Drosophila melanogaster X Chromosome

PLOS ONE, 9(8).

By: S. Vensko n & E. Stone n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Chromosomal Proteins, Non-Histone / metabolism; Chromosome Mapping; Chromosomes, Insect / physiology; DNA Helicases / metabolism; DNA-Binding Proteins / metabolism; Dosage Compensation, Genetic / genetics; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster / genetics; Genes, X-Linked / physiology; Histone Acetyltransferases / metabolism; Male; Multiprotein Complexes / metabolism; Multiprotein Complexes / physiology; Nuclear Proteins / metabolism; Sex Differentiation / genetics; Transcription Factors / metabolism; Transcriptional Activation; X Chromosome / physiology
Source: Web Of Science
Added: August 6, 2018

2014 journal article

Population Genomic Analysis Reveals No Evidence for GC-Biased Gene Conversion in Drosophila melanogaster

MOLECULAR BIOLOGY AND EVOLUTION, 31(2), 425–433.

By: M. Robinson n, E. Stone n & N. Singh n

co-author countries: United States of America 🇺🇸
author keywords: GC-biased gene conversion; Drosophila melanogaster; whole genome; polymorphism and divergence data
MeSH headings : Alleles; Animals; Chromosomes, Insect; Cytosine / metabolism; Drosophila melanogaster / genetics; Evolution, Molecular; Gene Conversion; Genome, Insect; Genomics; Guanine / metabolism; Mutation Rate; Phylogeny; Polymorphism, Genetic
Source: Web Of Science
Added: August 6, 2018

2014 personal communication

Predictor performance with stratified data and imbalanced classes

Stone, E. A. (2014, August).

By: E. Stone*

MeSH headings : Evolution, Molecular; Exome / genetics; Genetic Variation / genetics; HapMap Project; High-Throughput Nucleotide Sequencing; Humans
Source: Web Of Science
Added: August 6, 2018

2014 journal article

Structural properties of the minimum cut of partially-supplied graphs

DISCRETE APPLIED MATHEMATICS, 177, 152–157.

By: A. Griffing n, B. Lynch n & E. Stone n

co-author countries: United States of America 🇺🇸
author keywords: Graph theory; Minimum cut; Tree reconstruction
Source: Web Of Science
Added: August 6, 2018

2013 journal article

An eigenvector interlacing property of graphs that arise from trees by Schur complementation of the Laplacian

LINEAR ALGEBRA AND ITS APPLICATIONS, 438(3), 1078–1094.

By: A. Griffing n, B. Lynch n & E. Stone n

co-author countries: United States of America 🇺🇸
author keywords: Trees; Schur complement; Eigenvectors; Harmonic functions; Partially-supplied graph; Nodal domains; Interlacing
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Differentially expressed microRNAs and affected biological pathways revealed by modulated modularity clustering (MMC) analysis of human preeclamptic and IUGR placentas

Placenta, 34(7), 599–605.

By: L. Guo n, S. Tsai*, N. Hardison n, A. James*, A. Motsinger-Reif n, B. Thames*, E. Stone n, C. Deng*, J. Piedrahita n

co-author countries: China 🇨🇳 United States of America 🇺🇸
author keywords: Placenta; Preeclampsia; IUGR; MiR-194; MiR-149
MeSH headings : Down-Regulation; Female; Fetal Growth Retardation / genetics; Fetal Growth Retardation / metabolism; Humans; MicroRNAs / biosynthesis; Placenta / metabolism; Pre-Eclampsia / genetics; Pre-Eclampsia / metabolism; Pregnancy; Transcriptome
Sources: Web Of Science, Crossref
Added: August 6, 2018

2013 journal article

Fine-scale heterogeneity in crossover rate in the garnet-scalloped region of the Drosophila melanogaster X chromosome

Genetics, 194(2), 375–112.

By: N. Singh, E. Stone, C. Aquadro & A. Clark

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

Sexuality Generates Diversity in the Aflatoxin Gene Cluster: Evidence on a Global Scale

PLoS Pathogens, 9(8), e1003574.

By: G. Moore*, J. Elliott n, R. Singh n, B. Horn*, J. Dorner*, E. Stone n, S. Chulze*, G. Barros* ...

co-author countries: Argentina 🇦🇷 Australia 🇦🇺 Benin 🇧🇯 India 🇮🇳 United States of America 🇺🇸

Ed(s): B. McDonald

MeSH headings : Aflatoxins / biosynthesis; Aflatoxins / genetics; Aspergillus flavus / genetics; Aspergillus flavus / metabolism; Fungal Proteins / genetics; Fungal Proteins / metabolism; Genes, Fungal / physiology; Multigene Family / physiology; Repressor Proteins / genetics; Repressor Proteins / metabolism; Species Specificity
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 journal article

Age-specific variation in immune response in drosophila melanogaster has a genetic basis

Genetics, 191(3), 989–584.

By: T. Felix, K. Hughes, E. Stone, J. Drnevich & J. Leips

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

Effect of sexual recombination on population diversity in aflatoxin production by Aspergillus flavus and evidence for cryptic heterokaryosis

MOLECULAR ECOLOGY, 21(6), 1453–1476.

By: R. Olarte n, B. Horn*, J. Dorner*, J. Monacell n, R. Singh n, E. Stone n, I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: array comparative genome hybridization; biological control; heritability; multilocus sequence typing; non-Mendelian segregation; vegetative compatibility group
MeSH headings : Aflatoxins / biosynthesis; Aspergillus flavus / genetics; Aspergillus flavus / metabolism; Comparative Genomic Hybridization; Fungal Proteins / genetics; Genes, Mating Type, Fungal / genetics; Genetic Variation; Karyotyping; Molecular Sequence Data; Multigene Family; Recombination, Genetic; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Joint genotyping on the fly: Identifying variation among a sequenced panel of inbred lines

GENOME RESEARCH, 22(5), 966–974.

By: E. Stone*

MeSH headings : Algorithms; Animals; Chromosome Mapping; Computer Simulation; Drosophila melanogaster / genetics; Genetic Variation; Genotyping Techniques / standards; Inbreeding; Likelihood Functions; Models, Genetic; Polymorphism, Single Nucleotide; Reference Standards; Sequence Analysis, DNA
Source: Web Of Science
Added: August 6, 2018

2011 journal article

A population genetic approach to mapping neurological disorder genes using deep resequencing

PLoS Genetics, 7(2).

By: R. Myers, F. Casals, J. Gauthier, F. Hamdan, J. Keebler, A. Boyko, C. Bustamante, A. Piton ...

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Identification of RNA binding motif proteins essential for cardiovascular development

BMC DEVELOPMENTAL BIOLOGY, 11.

By: S. Maragh*, R. Miller*, S. Bessling*, D. McGaughey*, M. Wessels*, B. Graaf*, E. Stone n, A. Bertoli-Avella* ...

co-author countries: Netherlands 🇳🇱 United States of America 🇺🇸
MeSH headings : Animals; Animals, Genetically Modified; Binding Sites; Cardiovascular System / embryology; Embryo, Nonmammalian / metabolism; Gene Expression Regulation, Developmental; Morphogenesis / genetics; RNA / metabolism; RNA-Binding Proteins / genetics; RNA-Binding Proteins / metabolism; Zebrafish / embryology; Zebrafish / genetics; Zebrafish Proteins / genetics; Zebrafish Proteins / metabolism
Source: Web Of Science
Added: August 6, 2018

2011 journal article

The Effects of Weak Genetic Perturbations on the Transcriptome of the Wing Imaginal Disc and Its Association With Wing Shape in Drosophila melanogaster

GENETICS, 187(4), 1171–U314.

By: I. Dworkin n, J. Anderson n, Y. Idaghdour n, E. Parker n, E. Stone n & G. Gibson n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster / genetics; Drosophila melanogaster / growth & development; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genes, Insect; Genetic Variation; Genome, Insect; Genotype; Heterozygote; Linear Models; Multigene Family; Mutation; Phenotype; Transcriptional Activation; Wings, Animal / growth & development
Source: Web Of Science
Added: August 6, 2018

2011 journal article

The non-random clustering of non-synonymous substitutions and its relationship to evolutionary rate

BMC GENOMICS, 12.

By: L. McFerrin n & E. Stone n

co-author countries: United States of America 🇺🇸
MeSH headings : Amino Acid Sequence; Amino Acid Substitution; Animals; Cluster Analysis; Evolution, Molecular; Humans; Molecular Sequence Data; Proteins / chemistry; Proteins / genetics; Sequence Alignment
Source: Web Of Science
Added: August 6, 2018

2011 journal article

Variation in genome-wide mutation rates within and between human families

Nature Genetics, 43(7), 712–137.

By: D. Conrad, J. Keebler, M. DePristo, S. Lindsay, Y. Zhang, F. Casals, Y. Idaghdour, C. Hartl ...

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Why the Phylogenetic Regression Appears Robust to Tree Misspecification

SYSTEMATIC BIOLOGY, 60(3), 245–260.

By: E. Stone n

co-author countries: United States of America 🇺🇸
author keywords: Comparative method; independent contrasts; phylogenetic regression; robustness
MeSH headings : Animals; Biological Evolution; Computer Simulation; Linear Models; Models, Genetic; Phylogeny; Primates / classification
Source: Web Of Science
Added: August 6, 2018

2010 journal article

De novo mutations in the gene encoding the synaptic scaffolding protein SHANK3 in patients ascertained for schizophrenia

Proceedings of the National Academy of Sciences of the United States of America, 107(17), 7863–7868.

By: J. Gauthier, N. Champagne, R. Lafreniere, L. Xiong, D. Spiegelman, E. Brustein, M. Lapointe, H. Peng ...

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

Direct measure of the de novo mutation rate in autism and schizophrenia cohorts

American Journal of Human Genetics, 87(3), 316–324.

By: P. Awadalla, J. Gauthier, R. Myers, F. Casals, F. Hamdan, A. Griffing, M. Cote, E. Henrion ...

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

ProPhylER: A curated online resource for protein function and structure based on evolutionary constraint analyses

GENOME RESEARCH, 20(1), 142–154.

By: J. Binkley, K. Karra, A. Kirby, M. Hosobuchi, E. Stone* & A. Sidow

MeSH headings : Databases, Protein; Eukaryota / genetics; Eukaryota / metabolism; Evolution, Molecular; Internet; Phylogeny; Polymorphism, Single Nucleotide; Proteins / chemistry; Proteins / genetics; Proteins / metabolism; Structure-Activity Relationship; User-Computer Interface
Source: Web Of Science
Added: August 6, 2018

2009 journal article

Estimates of natural selection due to protein tertiary structure inform the ancestry of biallelic loci

Gene, 441(1-2), 45–52.

By: S. Choi n, E. Stone n, H. Kishino* & J. Thorne n

co-author countries: Japan 🇯🇵 United States of America 🇺🇸
MeSH headings : Evolution, Molecular; Gene Frequency; Humans; Polymorphism, Single Nucleotide; Protein Structure, Tertiary; Proteins / genetics; Selection, Genetic
Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

Modulated Modularity Clustering as an Exploratory Tool for Functional Genomic Inference

PLOS GENETICS, 5(5).

By: E. Stone n & J. Ayroles n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Cluster Analysis; Computer Simulation; Data Interpretation, Statistical; Databases, Genetic; Drosophila melanogaster / genetics; Gene Expression Profiling / statistics & numerical data; Genetic Techniques; Genomics / statistics & numerical data; Humans; Lymphocytes / immunology; Lymphocytes / metabolism; Models, Genetic; Multigene Family; Systems Biology
Source: Web Of Science
Added: August 6, 2018

2009 journal article

On the Fiedler vectors of graphs that arise from trees by Schur complementation of the Laplacian

LINEAR ALGEBRA AND ITS APPLICATIONS, 431(10), 1869–1880.

By: E. Stone n & A. Griffing n

co-author countries: United States of America 🇺🇸
author keywords: Trees; Graph Laplacians; Fiedler vectors; Perron components
Source: Web Of Science
Added: August 6, 2018

2009 journal article

SIMULATION FROM ENDPOINT-CONDITIONED, CONTINUOUS-TIME MARKOV CHAINS ON A FINITE STATE SPACE, WITH APPLICATIONS TO MOLECULAR EVOLUTION

ANNALS OF APPLIED STATISTICS, 3(3), 1204–1231.

By: A. Hobolth & E. Stone*

author keywords: Continuous-time Markov chains; simulation; molecular evolution
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Constructing a meaningful evolutionary average at the phylogenetic center of mass

BMC BIOINFORMATICS, 8.

By: E. Stone n & A. Sidow*

co-author countries: United States of America 🇺🇸
MeSH headings : Biological Evolution; Chromosome Mapping / methods; Computer Simulation; Evolution, Molecular; Genetic Variation / genetics; Genetics, Population; Models, Genetic; Models, Statistical; Phylogeny
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Mixture modeling of transcript abundance classes in natural populations

GENOME BIOLOGY, 8(6).

By: W. Hsieh n, G. Passador-Gurgel n, E. Stone n & G. Gibson n

co-author countries: Taiwan, Province of China 🇹🇼 United States of America 🇺🇸
MeSH headings : Animals; California; Cell Line, Tumor; Drosophila melanogaster / genetics; Female; Gene Expression Profiling; Genetics, Population; Humans; Male; North Carolina; Transcription, Genetic
Source: Web Of Science
Added: August 6, 2018

2006 journal article

RET is constitutively activated by novel tandem mutations that alter the active site resulting in multiple endocrine neoplasia type 2B

CANCER RESEARCH, 66(20), 10179–10187.

By: A. Cranston*, C. Carniti*, K. Oakhill*, E. Radzio-Andzelm*, E. Stone n, A. McCallion*, S. Hodgson*, S. Clarke* ...

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 Italy 🇮🇹 United States of America 🇺🇸
MeSH headings : Amino Acid Sequence; Base Sequence; Binding Sites; Cell Transformation, Neoplastic / genetics; Enzyme Activation; Female; Humans; Middle Aged; Models, Molecular; Molecular Sequence Data; Multiple Endocrine Neoplasia Type 2b / enzymology; Multiple Endocrine Neoplasia Type 2b / genetics; Mutation; Pedigree; Protein Conformation; Protein Structure, Tertiary; Proto-Oncogene Proteins c-ret / chemistry; Proto-Oncogene Proteins c-ret / genetics; Proto-Oncogene Proteins c-ret / metabolism; Sequence Alignment; Sequence Homology, Amino Acid
Source: Web Of Science
Added: August 6, 2018

journal article

Epistasis dominates the genetic architecture of Drosophila quantitative traits

Huang, W., Richards, S., Carbone, M. A., Zhu, D. H., Anholt, R. R. H., Ayroles, J. F., … Muzny, D. Proceedings of the National Academy of Sciences of the United States of America, 109(39), 15553–15559.

By: W. Huang, S. Richards, M. Carbone, D. Zhu, R. Anholt, J. Ayroles, L. Duncan, K. Jordan ...

Source: NC State University Libraries
Added: August 6, 2018

journal article

Functional genome annotation of Drosophila seminal fluid proteins using transcriptional genetic networks

Ayroles, J. F., Laflamme, B. A., Stone, E. A., Wolfner, M. F., & Mackay, T. F. C. Genetical Research, 93(6), 387–395.

By: J. Ayroles, B. Laflamme, E. Stone, M. Wolfner & T. Mackay

Source: NC State University Libraries
Added: August 6, 2018

journal article

Genetic basis of transcriptome diversity in Drosophila melanogaster

Huang, W., Carbone, M. A., Magwire, M. M., Peiffer, J. A., Lyman, R. F., Stone, E. A., … Mackay, T. F. C. Proceedings of the National Academy of Sciences of the United States of America, 112(44), E6010–6019.

By: W. Huang, M. Carbone, M. Magwire, J. Peiffer, R. Lyman, E. Stone, R. Anholt, T. Mackay

Source: NC State University Libraries
Added: August 6, 2018

journal article

Genomic variation and its impact on gene expression in Drosophila melanogaster

Massouras, A., Waszak, S. M., Albarca-Aguilera, M., Hens, K., Holcombe, W., Ayroles, J. F., … Deplancke, B. PLoS Genetics, 8(11).

By: A. Massouras, S. Waszak, M. Albarca-Aguilera, K. Hens, W. Holcombe, J. Ayroles, E. Dermitzakis, E. Stone ...

Source: NC State University Libraries
Added: August 6, 2018

journal article

Plasticity of the chemoreceptor repertoire in Drosophila melanogaster

Zhou, S. S., Stone, E. A., Mackay, T. F. C., & Anholt, R. R. H. PLoS Genetics, 5(10).

By: S. Zhou, E. Stone, T. Mackay & R. Anholt

Source: NC State University Libraries
Added: August 6, 2018

journal article

The Drosophila melanogaster genetic reference panel

Mackay, T. F. C., Richards, S., Stone, E. A., Barbadilla, A., Ayroles, J. F., Zhu, D. H., … Carbone, M. A. Nature, 482(7384), 173–178.

By: T. Mackay, S. Richards, E. Stone, A. Barbadilla, J. Ayroles, D. Zhu, S. Casillas, Y. Han ...

Source: NC State University Libraries
Added: August 6, 2018

journal article

Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster

Ober, U., Ayroles, J. F., Stone, E. A., Richards, S., Zhu, D. H., Gibbs, R. A., … Simianer, H. PLoS Genetics, 8(5).

By: U. Ober, J. Ayroles, E. Stone, S. Richards, D. Zhu, R. Gibbs, C. Stricker, D. Gianola ...

Source: NC State University Libraries
Added: August 6, 2018