Works (42)

Updated: April 11th, 2023 10:13

2016 personal communication

Bias-Variance Tradeoffs in Recombination Rate Estimation

Stone, E. A., & Singh, N. D. (2016, February).

By: E. Stone & N. Singh

Source: Web Of Science
Added: August 6, 2018

2016 journal article

Sporadic, Global Linkage Disequilibrium Between Unlinked Segregating Sites

GENETICS, 202(2), 427-+.

By: D. Skelly*, P. Magwene* & E. Stone

author keywords: linkage disequilibrium; genome-wide association study; genetically indistinguishable
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Enhanced diversity and aflatoxigenicity in interspecific hybrids ofAspergillus flavusandAspergillus parasiticus

Molecular Ecology, 24(8), 1889–1909.

By: R. Olarte n, C. Worthington n, B. Horn*, G. Moore*, R. Singh n, J. Monacell, J. Dorner*, E. Stone, D. Xie, I. Carbone

author keywords: allopolyploid; array comparative genome hybridization; flow cytometry; meiosis; population
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 review

Recent progress and open questions in Drosophila dosage compensation

[Review of ]. FLY, 9(1), 29–35.

By: S. Vensko & E. Stone

author keywords: chromatin; dosage compensation; Drosophila; epigenetics; male-specific lethal; MSL complex; review
Source: Web Of Science
Added: August 6, 2018

2015 journal article

The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen

GENOME RESEARCH, 25(5), 762–774.

By: P. Strope*, D. Skelly*, S. Kozmin*, G. Mahadevan*, E. Stone, P. Magwene*, F. Dietrich*, J. McCusker*

Source: Web Of Science
Added: August 6, 2018

2015 journal article

X-to-autosome expression and msl-2 transcript abundance correlate among Drosophila melanogaster somatic tissues

PEERJ, 3.

By: S. Vensko & E. Stone

author keywords: H4K16Ac; Male-Specific Lethal complex; Drosophila melanogaster; Dosage compensation complex; Dosage compensation
Source: Web Of Science
Added: August 6, 2018

2014 journal article

Genome-wide analysis in Drosophila reveals age-specific effects of SNPs on fitness traits

NATURE COMMUNICATIONS, 5.

By: M. Durham*, M. Magwire, E. Stone & J. Leips*

Source: Web Of Science
Added: August 6, 2018

2014 journal article

Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines

Genome Research, 24(7), 1193–1208.

By: W. Huang, A. Massouras, Y. Inoue, J. Peiffer, M. Ramia, A. Tarone, L. Turlapati, T. Zichner ...

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

No Evidence for a Global Male-Specific Lethal Complex-Mediated Dosage Compensation Contribution to the Demasculinization of the Drosophila melanogaster X Chromosome

PLOS ONE, 9(8).

By: S. Vensko & E. Stone

Source: Web Of Science
Added: August 6, 2018

2014 journal article

Population Genomic Analysis Reveals No Evidence for GC-Biased Gene Conversion in Drosophila melanogaster

MOLECULAR BIOLOGY AND EVOLUTION, 31(2), 425–433.

By: M. Robinson, E. Stone & N. Singh

author keywords: GC-biased gene conversion; Drosophila melanogaster; whole genome; polymorphism and divergence data
Source: Web Of Science
Added: August 6, 2018

2014 personal communication

Predictor performance with stratified data and imbalanced classes

Stone, E. A. (2014, August).

By: E. Stone

Source: Web Of Science
Added: August 6, 2018

2014 journal article

Structural properties of the minimum cut of partially-supplied graphs

DISCRETE APPLIED MATHEMATICS, 177, 152–157.

By: A. Griffing, B. Lynch & E. Stone

author keywords: Graph theory; Minimum cut; Tree reconstruction
Source: Web Of Science
Added: August 6, 2018

2013 journal article

An eigenvector interlacing property of graphs that arise from trees by Schur complementation of the Laplacian

LINEAR ALGEBRA AND ITS APPLICATIONS, 438(3), 1078–1094.

By: A. Griffing n, B. Lynch n & E. Stone

author keywords: Trees; Schur complement; Eigenvectors; Harmonic functions; Partially-supplied graph; Nodal domains; Interlacing
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Differentially expressed microRNAs and affected biological pathways revealed by modulated modularity clustering (MMC) analysis of human preeclamptic and IUGR placentas

Placenta, 34(7), 599–605.

By: L. Guo n, S. Tsai*, N. Hardison, A. James*, A. Motsinger-Reif, B. Thames*, E. Stone, C. Deng*, J. Piedrahita

author keywords: Placenta; Preeclampsia; IUGR; MiR-194; MiR-149
Sources: Web Of Science, Crossref
Added: August 6, 2018

2013 journal article

Fine-scale heterogeneity in crossover rate in the garnet-scalloped region of the Drosophila melanogaster X chromosome

Genetics, 194(2), 375–112.

By: N. Singh, E. Stone, C. Aquadro & A. Clark

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

Sexuality Generates Diversity in the Aflatoxin Gene Cluster: Evidence on a Global Scale

PLoS Pathogens, 9(8), e1003574.

By: G. Moore*, J. Elliott n, R. Singh, B. Horn*, J. Dorner*, E. Stone, S. Chulze*, G. Barros* ...

Ed(s): B. McDonald

Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 journal article

Age-specific variation in immune response in drosophila melanogaster has a genetic basis

Genetics, 191(3), 989–584.

By: T. Felix, K. Hughes, E. Stone, J. Drnevich & J. Leips

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

Effect of sexual recombination on population diversity in aflatoxin production by Aspergillus flavus and evidence for cryptic heterokaryosis

MOLECULAR ECOLOGY, 21(6), 1453–1476.

By: R. Olarte, B. Horn*, J. Dorner*, J. Monacell, R. Singh, E. Stone, I. Carbone

author keywords: array comparative genome hybridization; biological control; heritability; multilocus sequence typing; non-Mendelian segregation; vegetative compatibility group
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Joint genotyping on the fly: Identifying variation among a sequenced panel of inbred lines

GENOME RESEARCH, 22(5), 966–974.

By: E. Stone

Source: Web Of Science
Added: August 6, 2018

2011 journal article

A population genetic approach to mapping neurological disorder genes using deep resequencing

PLoS Genetics, 7(2).

By: R. Myers, F. Casals, J. Gauthier, F. Hamdan, J. Keebler, A. Boyko, C. Bustamante, A. Piton ...

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Identification of RNA binding motif proteins essential for cardiovascular development

BMC DEVELOPMENTAL BIOLOGY, 11.

By: S. Maragh*, R. Miller*, S. Bessling*, D. McGaughey*, M. Wessels*, B. Graaf*, E. Stone, A. Bertoli-Avella* ...

Source: Web Of Science
Added: August 6, 2018

2011 journal article

The Effects of Weak Genetic Perturbations on the Transcriptome of the Wing Imaginal Disc and Its Association With Wing Shape in Drosophila melanogaster

GENETICS, 187(4), 1171–U314.

By: I. Dworkin, J. Anderson n, Y. Idaghdour, E. Parker n, E. Stone & G. Gibson

Source: Web Of Science
Added: August 6, 2018

2011 journal article

The non-random clustering of non-synonymous substitutions and its relationship to evolutionary rate

BMC GENOMICS, 12.

By: L. McFerrin n & E. Stone

Source: Web Of Science
Added: August 6, 2018

2011 journal article

Variation in genome-wide mutation rates within and between human families

Nature Genetics, 43(7), 712–137.

By: D. Conrad, J. Keebler, M. DePristo, S. Lindsay, Y. Zhang, F. Casals, Y. Idaghdour, C. Hartl ...

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Why the Phylogenetic Regression Appears Robust to Tree Misspecification

SYSTEMATIC BIOLOGY, 60(3), 245–260.

By: E. Stone

author keywords: Comparative method; independent contrasts; phylogenetic regression; robustness
Source: Web Of Science
Added: August 6, 2018

2010 journal article

De novo mutations in the gene encoding the synaptic scaffolding protein SHANK3 in patients ascertained for schizophrenia

Proceedings of the National Academy of Sciences of the United States of America, 107(17), 7863–7868.

By: J. Gauthier, N. Champagne, R. Lafreniere, L. Xiong, D. Spiegelman, E. Brustein, M. Lapointe, H. Peng ...

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

Direct measure of the de novo mutation rate in autism and schizophrenia cohorts

American Journal of Human Genetics, 87(3), 316–324.

By: P. Awadalla, J. Gauthier, R. Myers, F. Casals, F. Hamdan, A. Griffing, M. Cote, E. Henrion ...

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

ProPhylER: A curated online resource for protein function and structure based on evolutionary constraint analyses

GENOME RESEARCH, 20(1), 142–154.

By: J. Binkley*, K. Karra, A. Kirby, M. Hosobuchi, E. Stone & A. Sidow

Source: Web Of Science
Added: August 6, 2018

2009 journal article

Estimates of natural selection due to protein tertiary structure inform the ancestry of biallelic loci

Gene, 441(1-2), 45–52.

By: S. Choi, E. Stone, H. Kishino* & J. Thorne

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

Modulated Modularity Clustering as an Exploratory Tool for Functional Genomic Inference

PLOS GENETICS, 5(5).

By: E. Stone & J. Ayroles

Source: Web Of Science
Added: August 6, 2018

2009 journal article

On the Fiedler vectors of graphs that arise from trees by Schur complementation of the Laplacian

LINEAR ALGEBRA AND ITS APPLICATIONS, 431(10), 1869–1880.

By: E. Stone & A. Griffing

author keywords: Trees; Graph Laplacians; Fiedler vectors; Perron components
Source: Web Of Science
Added: August 6, 2018

2009 journal article

SIMULATION FROM ENDPOINT-CONDITIONED, CONTINUOUS-TIME MARKOV CHAINS ON A FINITE STATE SPACE, WITH APPLICATIONS TO MOLECULAR EVOLUTION

ANNALS OF APPLIED STATISTICS, 3(3), 1204–1231.

By: A. Hobolth* & E. Stone

author keywords: Continuous-time Markov chains; simulation; molecular evolution
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Constructing a meaningful evolutionary average at the phylogenetic center of mass

BMC BIOINFORMATICS, 8.

By: E. Stone & A. Sidow*

Source: Web Of Science
Added: August 6, 2018

2007 journal article

Mixture modeling of transcript abundance classes in natural populations

GENOME BIOLOGY, 8(6).

By: W. Hsieh n, G. Passador-Gurgel, E. Stone & G. Gibson

Source: Web Of Science
Added: August 6, 2018

2006 journal article

RET is constitutively activated by novel tandem mutations that alter the active site resulting in multiple endocrine neoplasia type 2B

CANCER RESEARCH, 66(20), 10179–10187.

By: A. Cranston*, C. Carniti*, K. Oakhill*, E. Radzio-Andzelm*, E. Stone, A. McCallion*, S. Hodgson*, S. Clarke* ...

Source: Web Of Science
Added: August 6, 2018

journal article

Epistasis dominates the genetic architecture of Drosophila quantitative traits

Huang, W., Richards, S., Carbone, M. A., Zhu, D. H., Anholt, R. R. H., Ayroles, J. F., … Muzny, D. Proceedings of the National Academy of Sciences of the United States of America, 109(39), 15553–15559.

By: W. Huang, S. Richards, M. Carbone, D. Zhu, R. Anholt, J. Ayroles, L. Duncan, K. Jordan ...

Source: NC State University Libraries
Added: August 6, 2018

journal article

Functional genome annotation of Drosophila seminal fluid proteins using transcriptional genetic networks

Ayroles, J. F., Laflamme, B. A., Stone, E. A., Wolfner, M. F., & Mackay, T. F. C. Genetical Research, 93(6), 387–395.

By: J. Ayroles, B. Laflamme, E. Stone, M. Wolfner & T. Mackay

Source: NC State University Libraries
Added: August 6, 2018

journal article

Genetic basis of transcriptome diversity in Drosophila melanogaster

Huang, W., Carbone, M. A., Magwire, M. M., Peiffer, J. A., Lyman, R. F., Stone, E. A., … Mackay, T. F. C. Proceedings of the National Academy of Sciences of the United States of America, 112(44), E6010–6019.

By: W. Huang, M. Carbone, M. Magwire, J. Peiffer, R. Lyman, E. Stone, R. Anholt, T. Mackay

Source: NC State University Libraries
Added: August 6, 2018

journal article

Genomic variation and its impact on gene expression in Drosophila melanogaster

Massouras, A., Waszak, S. M., Albarca-Aguilera, M., Hens, K., Holcombe, W., Ayroles, J. F., … Deplancke, B. PLoS Genetics, 8(11).

By: A. Massouras, S. Waszak, M. Albarca-Aguilera, K. Hens, W. Holcombe, J. Ayroles, E. Dermitzakis, E. Stone ...

Source: NC State University Libraries
Added: August 6, 2018

journal article

Plasticity of the chemoreceptor repertoire in Drosophila melanogaster

Zhou, S. S., Stone, E. A., Mackay, T. F. C., & Anholt, R. R. H. PLoS Genetics, 5(10).

By: S. Zhou, E. Stone, T. Mackay & R. Anholt

Source: NC State University Libraries
Added: August 6, 2018

journal article

The Drosophila melanogaster genetic reference panel

Mackay, T. F. C., Richards, S., Stone, E. A., Barbadilla, A., Ayroles, J. F., Zhu, D. H., … Carbone, M. A. Nature, 482(7384), 173–178.

By: T. Mackay, S. Richards, E. Stone, A. Barbadilla, J. Ayroles, D. Zhu, S. Casillas, Y. Han ...

Source: NC State University Libraries
Added: August 6, 2018

journal article

Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster

Ober, U., Ayroles, J. F., Stone, E. A., Richards, S., Zhu, D. H., Gibbs, R. A., … Simianer, H. PLoS Genetics, 8(5).

By: U. Ober, J. Ayroles, E. Stone, S. Richards, D. Zhu, R. Gibbs, C. Stricker, D. Gianola ...

Source: NC State University Libraries
Added: August 6, 2018