Eric Miller Nguyen, K.-U., Zhang, Y., Liu, Q., Zhang, R., Jin, X., Taniguchi, M., … Lindsey, J. S. (2023). [Review of Tolyporphins-Exotic Tetrapyrrole Pigments in a Cyanobacterium-A Review]. MOLECULES, 28(16). https://doi.org/10.3390/molecules28166132 Jin, X., Zhang, Y., Zhang, R., Nguyen, K.-U., Lindsey, J. S., & Miller, E. S. (2021). Identification of Putative Biosynthetic Gene Clusters for Tolyporphins in Multiple Filamentous Cyanobacteria. LIFE-BASEL, 11(8). https://doi.org/10.3390/life11080758 Jin, X., Miller, E. S., & Lindsey, J. S. (2021). Natural Product Gene Clusters in the Filamentous Nostocales Cyanobacterium HT-58-2. LIFE-BASEL, 11(4). https://doi.org/10.3390/life11040356 Barnhart-Dailey, M., Zhang, Y., Zhang, R., Anthony, S. M., Aaron, J. S., Miller, E. S., … Timlin, J. A. (2019). Cellular localization of tolyporphins, unusual tetrapyrroles, in a microbial photosynthetic community determined using hyperspectral confocal fluorescence microscopy. Photosynthesis Research, 141(3), 259–271. https://doi.org/10.1007/s11120-019-00625-w Hughes, R.-A., Jin, X., Zhang, Y., Zhang, R., Tran, S., Williams, P. G., … Miller, E. S. (2018). Genome sequence, metabolic properties and cyanobacterial attachment of Porphyrobacter sp. HT-58-2 isolated from a filamentous cyanobacterium–microbial consortium. Microbiology, 164(10), 1229–1239. https://doi.org/10.1099/mic.0.000706 Hanauer, D. I., Graham, M. J., Betancur, L., Bobrownicki, A., Cresawn, S. G., Garlena, R. A., … Zimmerman, A. (2017). An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning. Proceedings of the National Academy of Sciences, 114(51), 13531–13536. https://doi.org/10.1073/pnas.1718188115 Hughes, R.-A., Zhang, Y., Zhang, R., Williams, P. G., Lindsey, J. S., & Miller, E. S. (2017). Genome Sequence and Composition of a Tolyporphin-Producing Cyanobacterium-Microbial Community. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(19). https://doi.org/10.1128/aem.01068-17 Zhang, Y., Zhang, R., Nazari, M., Bagley, M. C., Miller, E. S., Williams, P. G., … Lindsey, J. S. (2017). Mass spectrometric detection of chlorophyll a and the tetrapyrrole secondary metabolite tolyporphin A in the filamentous cyanobacterium HT-58-2. Approaches to high-throughput screening of intact cyanobacteria. JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 21(11), 759–768. https://doi.org/10.1142/s108842461750078x Hood, D., Niedzwiedzki, D. M., Zhang, R., Zhang, Y., Dai, J., Miller, E. S., … Holten, D. (2017). Photophysical Characterization of the Naturally Occurring Dioxobacteriochlorin Tolyporphin A and Synthetic Oxobacteriochlorin Analogues. PHOTOCHEMISTRY AND PHOTOBIOLOGY, 93(5), 1204–1215. https://doi.org/10.1111/php.12781 Zhang, Y., Zhang, R., Hughes, R.-A., Dai, J., Gurr, J. R., Williams, P. G., … Lindsey, J. S. (2017). Quantitation of Tolyporphins, Diverse Tetrapyrrole Secondary Metabolites with Chlorophyll-Like Absorption, from a Filamentous Cyanobacterium-Microbial Community. Phytochemical Analysis, 29(2), 205–216. https://doi.org/10.1002/pca.2735 Lee, J. Y., Li, Z., & Miller, E. S. (2017). Vibrio Phage KVP40 Encodes a Functional NAD(+) Salvage Pathway. JOURNAL OF BACTERIOLOGY, 199(9). https://doi.org/10.1128/jb.00855-16 Harrell, E. A., & Miller, E. S. (2016). Genome Sequence of Aeromicrobium erythreum NRRL B-3381, an Erythromycin-Producing Bacterium of the Nocardioidaceae. Genome Announcements, 4(2). https://doi.org/10.1128/genomea.00300-16 Abraham, J., Bousquet, A.-C., Bruff, E., Carson, N., Clark, A., Connell, A., … Miller, E. S. (2016). Paenibacillus larvae Phage Tripp Genome Has 378-Base-Pair Terminal Repeats. Genome Announcements, 4(1). https://doi.org/10.1128/genomea.01498-15 Miller, E. S., Whittman, J., Kropinski, A. M., & Areaenssesn, E. M. (2015). Divavirus taxonomic bacteriophage group infecting Paenibacillus larvae. International Committee on the Taxonomy of Viruses. Carson, S., Bruff, E., DeFoor, W., Dums, J., Groth, A., Hatfield, T., … Miller, E. S. (2015). Genome Sequences of Six Paenibacillus larvae Siphoviridae Phages. Genome Announcements, 3(3). https://doi.org/10.1128/genomea.00101-15 Pope, W. H., Bowman, C. A., Russell, D. A., Jacobs-Sera, D., Asai, D. J., Cresawn, S. G., … Hatfull, G. F. (2015). Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity. ELife, 4. https://doi.org/10.7554/eLife.06416 Vu, S. K., Belloti, A. A., Gabriel, C. J., Brochu, H. N., Miller, E. S., Bitzer, D. L., & Vouk, M. A. (2014). Modeling ribosome dynamics to optimize heterologous protein production in escherichia coli. 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP). Presented at the 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP). https://doi.org/10.1109/GlobalSIP.2014.7032363 Carson, S., & Miller, E. (2013). Introducing primary scientific literature to first-year undergraduate researchers. Council on Undergraduate Research on the Web, 34(4), 17–22. Karam, J. D., & Miller, E. S. (2010, October 28). Bacteriophage T4 and its relatives. VIROLOGY JOURNAL, Vol. 7. https://doi.org/10.1186/1743-422x-7-293 Petrov, V. M., Ratnayaka, S., Nolan, J. M., Miller, E. S., & Karam, J. D. (2010). [Review of Genomes of the T4-related bacteriophages as windows on microbial genome evolution]. VIROLOGY JOURNAL, 7. https://doi.org/10.1186/1743-422x-7-292 Uzan, M., & Miller, E. S. (2010). [Review of Post-transcriptional control by bacteriophage T4: mRNA decay and inhibition of translation initiation]. VIROLOGY JOURNAL, 7. https://doi.org/10.1186/1743-422x-7-360 Dong, S., Shew, H. D., Tredway, L. P., Lu, J., Sivamani, E., Miller, E. S., & Qu, R. (2008). Expression of the bacteriophage T4 lysozyme gene in tall fescue confers resistance to gray leaf spot and brown patch diseases. TRANSGENIC RESEARCH, 17(1), 47–57. https://doi.org/10.1007/s11248-007-9073-3 Dean, T. R., Allen, S. V., & Miller, E. S. (2005). In vitro selection of phage RB69 RegA RNA binding sites yields UAA repeats. VIROLOGY, 336(1), 26–36. https://doi.org/10.1016/j.virol.2005.03.002 Pineda, M., Gregory, B. D., Szczypinski, B., Baxter, K. R., Hochschild, A., Miller, E. S., & Hinton, D. M. (2004). A family of anti-sigma(70) proteins in T4-type phages and bacteria that are similar to AsiA, a transcription inhibitor and co-activator of bacteriophage T4. JOURNAL OF MOLECULAR BIOLOGY, 344(5), 1183–1197. https://doi.org/10.1016/j.jmb.2004.10.003 Yin, S. M., Ho, C. K., Miller, E. S., & Shuman, S. (2004). Characterization of bacteriophage KVP40 and T4 RNA ligase 2. VIROLOGY, 319(1), 141–151. https://doi.org/10.1016/j.virol.2003.10.037 Miller, E. S., Kutter, E., Mosig, G., Arisaka, F., Kunisawa, T., & Ruger, W. (2003). [Review of Bacteriophage T4 genome]. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 67(1), 86-+. https://doi.org/10.1128/MMBR.67.1.86-156.2003 Miller, E. S., Heidelberg, J. F., Eisen, J. A., Nelson, W. C., Durkin, A. S., Ciecko, A., … Fraser, C. M. (2003). Complete genome sequence of the broad-host-range vibriophage KVP40: Comparative genomics of a T4-related bacteriophage. JOURNAL OF BACTERIOLOGY, 185(17), 5220–5233. https://doi.org/10.1128/JB.185.17.5220-5233.2003 Evans, K. L., Crowder, J., & Miller, E. S. (2000). Subtilisins of Bacillus spp. hydrolyze keratin and allow growth on feathers. CANADIAN JOURNAL OF MICROBIOLOGY, 46(11), 1004–1011. https://doi.org/10.1139/cjm-46-11-1004 Allen, S. V., & Miller, E. S. (1999). RNA-binding properties of in vitro expressed histidine-tagged RB69 RegA translational repressor protein. ANALYTICAL BIOCHEMISTRY, 269(1), 32–37. https://doi.org/10.1006/abio.1999.4025 Shih, J. C. H., Lin, X., & Miller, E. S. (1998). DNA encoding Bacillus lichenformis PWD-1 keratinase. Washington, DC: U.S. Patent and Trademark Office. Miller, E., Shih, G. C., Chang, S. K., & Ballard, D. N. (1997). An E-coli B mutation, rpoB5081, that prevents growth of phage T4 strains defective in host DNA degradation. FEMS Microbiology Letters, 157(1), 109–116. https://doi.org/10.1111/j.1574-6968.1997.tb12760.x Lin, X., Wong, S. L., Miller, E. S., & Shih, J. C. H. (1997, August). Expression of the Bacillus licheniformis PWD-1 keratinase gene in B-subtilis. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, Vol. 19, pp. 134–138. https://doi.org/10.1038/sj.jim.2900440 Lin, X., Kelemen, D. W., Miller, E. S., & Shih, J. C. (1995). Nucleotide sequence and expression of kerA, the gene encoding a keratinolytic protease of Bacillus licheniformis PWD-1. Applied and Environmental Microbiology, 61(4), 1469–1474. https://doi.org/10.1128/aem.61.4.1469-1474.1995 Jozwik, C. E., & Miller, E. S. (1995). RNA-protein interactions of the bacteriophage RB69 RegA translational repressor protein. Nucleic Acids Symposium Series, 33, 256–257. Miller, E. S., Karam, J. D., & Spicer, E. (1994). Control of translation initiation: mRNA structure and protein repressors. In J. D. Karam, J. W. Drake, K. N. Kreuzer, G. Mosig, D. H. Hall, F. A. Eiserling, … E. S. Miller (Eds.), Molecular Biology of Bacteriophage T4 (pp. 193–205). Washington, D.C: ASM Press. Miller, E. S., & Karam, J. D. (1994). Detection of plasmid encoded T4 proteins: radiolabeling and biological activity. In J. Karam, J. W. Drake, K. N. Kreuzer, G. Mosig, D. H. Hall, F. A. Eiserling, … E. S. Miller (Eds.), Molecular biology of bacteriophage T4. Washington, D.C.: ASM Press. Carlson, K., Miller, E. S., & Karam, J. D. (1994). Experiments in T4 genetics. In J. D. Karam, J. W. Drake, K. N. Kreuzer, G. Mosig, D. H. Hall, F. A. Eiserling, … E. S. Miller (Eds.), Molecular Biology of Bacteriophage T4 (pp. 421–483). Washington, D.C: ASM Press. Carlson, K., & Miller, E. S. (1994). General considerations for strain construction. In J. Karam, J. W. Drake, K. N. Kreuzer, G. Mosig, D. H. Hall, F. A. Eiserling, … E. S. Miller (Eds.), Molecular biology of bacteriophage T4 (pp. 438–441). Washington, D.C.: ASM Press. Carlson, K., & Miller, E. S. (1994). General procedures for manipulating bacteriophage T4. In J. Karam, J. W. Drake, K. N. Kreuzer, G. Mosig, D. H. Hall, F. A. Eiserling, … E. S. Miller (Eds.), Molecular biology of bacteriophage T4. Washington, D.C.: ASM Press. Karam, J. D., Hsu, T., & Miller, E. S. (1994). Large scale isolation of mRNA from T4-infected cells. In J. Karam, J. W. Drake, K. N. Kreuzer, G. Mosig, D. H. Hall, F. A. Eiserling, … E. S. Miller (Eds.), Molecular biology of bacteriophage T4. Washington, D.C.: ASM Press. Karam, J. D., Drake, J. W., Kreuzer, K. N., Mosig, G., Hall, D., Eiserling, F. A., … Miller, E. S. (1994). Molecular Biology of Bacteriophage T4. Washington, D.C: ASM Press. Jozwik, C. E., & Miller, E. S. (1994). PCR amplification of DNA from T4 plaques. In J. Karam, J. W. Drake, K. N. Kreuzer, G. Mosig, D. H. Hall, F. A. Eiserling, … E. S. Miller (Eds.), Molecular biology of bacteriophage T4. Washington, D.C.: ASM Press. Miller, E. S. (1994). Quantitation of T4 DNA synthesis by radiolabelling. In J. Karam, J. W. Drake, K. N. Kreuzer, G. Mosig, D. H. Hall, F. A. Eiserling, … E. S. Miller (Eds.), Molecular biology of bacteriophage T4. Washington, D.C.: ASM Press. Miller, E. S. (1994). Radiolabelling of T4 proteins and their analysis by gel electrophoresis. In J. Karam, J. W. Drake, K. N. Kreuzer, G. Mosig, D. H. Hall, F. A. Eiserling, … E. S. Miller (Eds.), Molecular biology of bacteriophage T4. Washington, D.C.: ASM Press. Kreuzer, H., & Miller, E. S. (1994). Rapid screening of phage progeny from multiple-factor crosses. In J. Karam, J. W. Drake, K. N. Kreuzer, G. Mosig, D. H. Hill, F. A. Eiserling, … E. S. Miller (Eds.), Molecular biology of bacteriophage T4 (pp. 442–443). Washington, D.C.: ASM Press. Jozwik, C. E., & Miller, E. S. (1992). Regions of bacteriophage T4 and RB69 RegA translational repressor proteins that determine RNA-binding specificity. Proceedings of the National Academy of Sciences, 89(11), 5053–5057. https://doi.org/10.1073/pnas.89.11.5053 Miller, E. S. (1991). Cloning vectors, mutagenesis, and gene disruption (ermR) for the erythromycin-producing bacterium Aeromicrobium erythreum. Applied and Environmental Microbiology, 57(9), 2758–2761. https://doi.org/10.1128/aem.57.9.2758-2761.1991 Miller, E. S., Woese, C. R., & Brenner, S. (1991). Description of the Erythromycin-Producing Bacterium Arthrobacter sp. Strain NRRL B-3381 as Aeromicrobium erythreum gen. nov., sp. nov. International Journal of Systematic Bacteriology, 41(3), 363–368. https://doi.org/10.1099/00207713-41-3-363 Miller, E. S., & Jozwik, C. E. (1990). Sequence analysis of conserved regA and variable orf43.1 genes in T4-like bacteriophages. Journal of Bacteriology, 172(9), 5180–5186. https://doi.org/10.1128/jb.172.9.5180-5186.1990 Miller, E. S., Karam, J., Dawson, M., Trojanowska, M., Gauss, P., & Gold, L. (1987). Translational repression: Biological activity of plasmid-encoded bacteriophage T4 RegA protein. Journal of Molecular Biology, 194(3), 397–410. https://doi.org/10.1016/0022-2836(87)90670-x Miller, E. S., Winter, R., Campbell, K. M., Power, S., & Gold, L. (1985). Bacteriophage T4 RegA protein. Purification of a translational repressor. Journal of Biological Chemistry, 260(24), 13053–13059. https://doi.org/10.1016/S0021-9258(17)38837-3 Miller, E. S., & Brenchley, J. E. (1984). Cloning and characterization of gdhA, the structural gene for glutamate dehydrogenase of Salmonella typhimurium. Journal of Bacteriology, 157(1), 171–178. https://doi.org/10.1128/jb.157.1.171-178.1984 Trojanowska, M., Miller, E. S., Karam, J., Stormo, G., & Gold, L. (1984). The bacteriophage T4regAgene: primary sequence of a translational repressor. Nucleic Acids Research, 12(15), 5979–5993. https://doi.org/10.1093/nar/12.15.5979 Gold, L., Inman, M., Miller, E., Pribnow, D., Schneider, T. D., Shinedling, S., & Stormo, G. (1984). Translational regulation during bacteriophage T4 development. In B. F. C. Clark & H. U. Petersen (Eds.), Gene expression : the translation step and its control : proceedings of the Alfred Benzon Symposium 19 held at the premises of the Royal Danish Academy of Sciences and Letters, Copenhagen, 19-23 June 1983. Copenhagen: Munskgaard. Miller, E. S., & Brenchley, J. E. (1981). L-Methionine SR-sulfoximine resistant glutamine synthetase from mutants of Salmonella typhimurium. Journal of Biological Chemistry, 256(21), 11307–11312. https://doi.org/10.1016/S0021-9258(19)68592-3 Miller, E. S., Demaree, R. S., & Tinling, S. P. (1978). Hematozoa of passeriform birds from Eagle Lake, California. Proceedings of the Helminthological Society of Washington, 45(2), 266–268.