Works (10)

Updated: July 12th, 2023 21:18

2012 journal article

Human tRNA(UUU)(LYs3) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism

JOURNAL OF MOLECULAR BIOLOGY, 416(4), 467–485.

By: F. Vendeix n, F. Murphy*, W. Cantara n, G. Leszczynska*, E. Gustilo n, B. Sproat, A. Malkiewicz*, P. Agris n

co-author countries: Poland 🇵🇱 United States of America 🇺🇸
author keywords: modifications; wobble decoding; anticodon structure; tRNA(LYs3)
MeSH headings : Anticodon / chemistry; Base Pairing; Circular Dichroism; Codon / chemistry; Crystallography, X-Ray; Humans; Hydrogen Bonding; Models, Molecular; Nucleic Acid Conformation; Pseudouridine / chemistry; RNA, Transfer, Lys / chemistry; Thermodynamics; Thiouridine / analogs & derivatives; Thiouridine / chemistry
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Binding of aminoglycoside antibiotics to helix 69 of 23S rRNA

Nucleic Acids Research, 38(9), 3094–3105.

By: A. Scheunemann, W. Graham, F. Vendeix & P. Agris

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

Different Modes of Binding of Mono-, Di-, and Trihalogenated Phenols to the Hemoglobin Dehaloperoxidase from Amphitrite ornata

BIOCHEMISTRY, 48(10), 2164–2172.

By: M. Davis n, H. Gracz n, F. Vendeix n, V. Serrano n, A. Somasundaram n, S. Decatur n, S. Franzen n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Binding Sites / physiology; Catalysis; Catalytic Domain / physiology; Heme / chemistry; Hemoglobins / chemistry; Hemoglobins / genetics; Hemoglobins / metabolism; Hydrocarbons, Halogenated / chemistry; Hydrocarbons, Halogenated / metabolism; Molecular Conformation; Nuclear Magnetic Resonance, Biomolecular; Peroxidases / chemistry; Peroxidases / genetics; Peroxidases / metabolism; Phenols / chemistry; Phenols / metabolism; Polychaeta / enzymology; Polychaeta / genetics; Potassium Cyanide / chemistry; Protein Binding / physiology; Protein Conformation; Recombinant Proteins / chemistry; Recombinant Proteins / genetics; Recombinant Proteins / metabolism; Substrate Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Free energy calculation of modified base-pair formation in explicit solvent: A predictive model

RNA, 15(12), 2278–2287.

By: F. Vendeix n, A. Munoz & P. Agris*

co-author countries: United States of America 🇺🇸
author keywords: modified nucleosides; base pairs in water; wobble recognition; refined molecular dynamics simulation
MeSH headings : Base Pairing; Models, Genetic; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; RNA / chemistry; Thermodynamics
Source: Web Of Science
Added: August 6, 2018

2009 journal article

The structure of the human tRNA(Lys3) anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs

NUCLEIC ACIDS RESEARCH, 37(10), 3342–3353.

By: Y. Bilbille n, F. Vendeix n, R. Guenther n, A. Malkiewicz n, X. Ariza n, J. Vilarrasa n, P. Agris n

co-author countries: Spain 🇪🇸 Poland 🇵🇱 United States of America 🇺🇸
MeSH headings : Anticodon / chemistry; Base Pair Mismatch; Base Sequence; Carbohydrates / chemistry; Genome, Viral; HIV-1 / genetics; Humans; Models, Molecular; Molecular Sequence Data; Nuclear Magnetic Resonance, Biomolecular; Protons; Pseudouridine / chemistry; RNA, Transfer, Lys / chemistry; RNA, Viral / chemistry; Thermodynamics; Thiouridine / analogs & derivatives; Thiouridine / chemistry
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding

BIOCHEMISTRY, 47(23), 6117–6129.

By: F. Vendeix n, A. Dziergowska n, E. Gustilo n, W. Graham n, B. Sproat n, A. Malkiewicz n, P. Agris n

co-author countries: Poland 🇵🇱 United States of America 🇺🇸
MeSH headings : Anticodon / chemistry; Base Sequence; Binding Sites; Codon / chemistry; Codon / metabolism; Dinucleoside Phosphates / chemistry; Escherichia coli / genetics; Magnetic Resonance Spectroscopy; Nucleic Acid Conformation; Oligoribonucleotides / chemistry; RNA, Bacterial / chemistry; RNA, Bacterial / genetics; RNA, Transfer / genetics; Ribosomes / metabolism
Source: Web Of Science
Added: August 6, 2018

2008 journal article

NMR studies of the inclusion complex of cloprostenol sodium salt with beta-cyclodextrin in aqueous solution

PHARMACEUTICAL RESEARCH, 25(5), 1142–1149.

By: H. Whang n, F. Vendeix n, H. Gracz n, J. Gadsby n & A. Tonelli n

co-author countries: United States of America 🇺🇸
author keywords: cloprostenol sodium salt; cyclodextrins; inclusion complexes; molecular modeling; nuclear magnetic resonance
MeSH headings : Chemical Phenomena; Chemistry, Physical; Cloprostenol / chemistry; Magnetic Resonance Spectroscopy; Models, Molecular; Solutions; beta-Cyclodextrins / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Synthesis and investigation of the 5-formylcytidine modified, anticodon stem and loop of the human mitochondrial tRNA(Met)

NUCLEIC ACIDS RESEARCH, 36(20), 6548–6557.

By: H. Lusic n, E. Gustilo n, F. Vendeix n, R. Kaiser n, M. Delaney n, W. Graham n, V. Moye n, W. Cantara n, P. Agris n, A. Deiters n

co-author countries: United States of America 🇺🇸
MeSH headings : Anticodon / chemistry; Base Sequence; Codon / metabolism; Cytidine / analogs & derivatives; Cytidine / chemistry; Humans; Molecular Sequence Data; Nucleic Acid Conformation; Protein Biosynthesis; RNA / chemistry; RNA, Mitochondrial; RNA, Transfer, Met / chemical synthesis; RNA, Transfer, Met / chemistry; RNA, Transfer, Met / metabolism; Thermodynamics
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines

NATURE STRUCTURAL & MOLECULAR BIOLOGY, 14(6), 498–502.

By: A. Weixlbaumer*, F. Murphy*, A. Dziergowska*, A. Malkiewicz*, F. Vendeix n, P. Agris n, V. Ramakrishnan*

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 Poland 🇵🇱 United States of America 🇺🇸
MeSH headings : Amino Acid Sequence; Anticodon / genetics; Base Pairing; Base Sequence; Codon / genetics; Crystallography; Models, Molecular; Molecular Sequence Data; Molecular Structure; RNA, Transfer, Val / genetics; RNA, Transfer, Val / physiology; Uridine / chemistry
Source: Web Of Science
Added: August 6, 2018

2007 review

tRNA's wobble decoding of the genome: 40 years of modification

[Review of ]. Journal of Molecular Biology, 366(1), 1–13.

By: P. Agris, F. Vendeix & W. Graham

Source: NC State University Libraries
Added: August 6, 2018

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