Stefan Franzen

Comparison of the Backbone Dynamics of Dehaloperoxidase-Hemoglobin Isoenzymes

González-Delgado, J. M., Thompson, P. M., Andrałojć, W., Gdaniec, Z., Ghiladi, R. A., & Franzen, S. (2024, April 2). The Journal of Physical Chemistry B, Vol. 4.

Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B

Aktar, M. S., Serrano, V., Ghiladi, R. A., & Franzen, S. (2024, July 3). Biochemistry, Vol. 63, pp. 1761–1773.

The mechanism of autoreduction in Dehaloperoxidase-A

Zhao, J., Chen, Y., Alford, H., & Franzen, S. (2024, December 19). Biochemical and Biophysical Research Communications, Vol. 745.

The role of proton-coupled electron transfer from protein to heme in dehaloperoxidase

Aktar, M. S., Madhuresh, N. K. D., Ghiladi, R. A., & Franzen, S. (2024, October 16). Biochimica Et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1873.

Comparative study of the binding and activation of 2,4-dichlorophenol by dehaloperoxidase A and B

Aktar, M. S., Serrano, V., Ghiladi, R., & Franzen, S. (2023, July 17). Journal of Inorganic Biochemistry, Vol. 247.

Decomposition of 2,4-dihalophenols by dehaloperoxidase activity and spontaneous reaction with hydrogen peroxide

Aktar, M. S., Hill, R., Holbert, W., & Franzen, S. (2023, December 24). Journal of Inorganic Biochemistry, Vol. 252.

Classical Model of Surface Enhanced Infrared Absorption (SEIRA) Spectroscopy

Gao, Y., Aspnes, D. E., & Franzen, S. (2022, January 10). The Journal of Physical Chemistry A, Vol. 1.

The divergent pH dependence of substrate turnover in dehaloperoxidases A and B

Madhuresh, N. K. D., Nguyen, H., & Franzen, S. (2022, November 3). Journal of Inorganic Biochemistry, Vol. 238.

A new inhibition mechanism in the multifunctional catalytic hemoglobin dehaloperoxidase as revealed by the DHP A(V59W) mutant: A spectroscopic and crystallographic study

Thompson, M. K., Shay, M. R., Serrano, V., Dumarieh, R., Ghiladi, R. A., & Franzen, S. (2021, June 22). Journal of Porphyrins and Phthalocyanines, Vol. 7.

Classical Correlation Model of Resonance Raman Spectroscopy

Gao, Y., Aspnes, D. E., & Franzen, S. (2020, October 21). The Journal of Physical Chemistry A, Vol. 124, pp. 9177–9186.

Critical Test of the Interaction of Surface Plasmon Resonances with Molecular Vibrational Transitions

Sachet, E., Aspnes, D. E., Maria, J.-P., & Franzen, S. (2020, February 10). The Journal of Physical Chemistry A, Vol. 124, pp. 1744–1753.

As good as gold and better: conducting metal oxide materials for mid-infrared plasmonic applications

Khamh, H., Sachet, E., Kelly, K., Maria, J.-P., & Franzen, S. (2018, January 1). Journal of Materials Chemistry C, Vol. 6, pp. 8326–8342.

Dynamics of dehaloperoxidase-hemoglobin A derived from NMR relaxation spectroscopy and molecular dynamics simulation

Zhao, J., Xue, M., Gudanis, D., Gracz, H., Findenegg, G. H., Gdaniec, Z., & Franzen, S. (2018, January 12). Journal of Inorganic Biochemistry, Vol. 181, pp. 65–73.

Bindings of NO, CO, and O-2 to multifunctional globin type dehaloperoxidase follow the 'sliding scale rule'

Biochemical Journal (London, England : 1984), 474, 3485–3498.

Bindings of NO, CO, and O2 to multifunctional globin type dehaloperoxidase follow the ‘sliding scale rule’

Bindings of NO, CO, and O2 to multifunctional globin type dehaloperoxidase follow the ‘sliding scale rule.’ Biochemical Journal, 474(20), 3485–3498.

Interaction of Azole-Based Environmental Pollutants with the Coelomic Hemoglobin from Amphitrite ornata: A Molecular Basis for Toxicity

Biochemistry, 56(17), 2294–2303.

Multi-functional hemoglobin dehaloperoxidases

Heme Peroxidases, (4), 218–244.

Near-Infrared Optical Extinction of Indium Tin Oxide Structures Prepared by Nanosphere Lithography

Kang, M., Losego, M., Sachet, E., Maria, J.-P., & Franzen, S. (2016, August 30). ACS Photonics, Vol. 3, pp. 1993–1999.

Steered molecular dynamics study of inhibitor binding in the internal binding site in dehaloperoxidase-hemoglobin

Zhang, Z., Santos, A. P., Zhou, Q., Liang, L., Wang, Q., Wu, T., & Franzen, S. (2016, January 16). Biophysical Chemistry, Vol. 211, pp. 28–38.

Vibrational spectroscopy of the double complex salt Pd(NH3)4(ReO4)2, a bimetallic catalyst precursor

Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 173, 618–624.

Aerobic oxidation of β-isophorone by tetraphenylporphyrin catalysts in pyridine solution

Burns, E., Huang, T., Weare, W. W., Bartolotti, L., Wang, X., Yao, J., … Franzen, S. (2015, September 25). Journal of Molecular Catalysis A Chemical, Vol. 410, pp. 110–120.

Distinct Enzyme–Substrate Interactions Revealed by Two Dimensional Kinetic Comparison between Dehaloperoxidase-Hemoglobin and Horseradish Peroxidase

Zhao, J., Lu, C., & Franzen, S. (2015, September 16). The Journal of Physical Chemistry B, Vol. 119, pp. 12828–12837.

Dysprosium-doped cadmium oxide as a gateway material for mid-infrared plasmonics

Nature Materials, 14(4), 414–420.

Measurement of Internal Substrate Binding in Dehaloperoxidase–Hemoglobin by Competition with the Heme–Fluoride Binding Equilibrium

Zhao, J., Moretto, J., Le, P., & Franzen, S. (2015, January 22). The Journal of Physical Chemistry B, Vol. 119, pp. 2827–2838.

The quadrapolar character of the Markovnikov reaction transition state

Franzen, S., Cochran, K. H., Weng, J., Bartolotti, L., & Delley, B. (2015, November 18). Chemical Physics, Vol. 464, pp. 46–54.

A Model for the Flexibility of the Distal Histidine in Dehaloperoxidase-Hemoglobin A Based on X-ray Crystal Structures of the Carbon Monoxide Adduct

Zhao, J., Serrano, V., & Franzen, S. (2014, March 27). Biochemistry, Vol. 53, pp. 2474–2482.

Controlling enantioselectivity of esterase in asymmetric hydrolysis of aryl prochiral diesters by introducing aromatic interactions

Biotechnology and Bioengineering, 111(9), 1729–1739.

Correlation of Heme Binding Affinity and Enzyme Kinetics of Dehaloperoxidase

Le, P., Zhao, J., & Franzen, S. (2014, October 20). Biochemistry, Vol. 53, pp. 6863–6877.

Dynamics of Multifunctional Dehaloperoxidase Hemoglobin

Biophysical Journal, 106(2), 662a.

Highly Efficient Fluorescent Interstrand Photo‐crosslinking of DNA Duplexes Labeled with 5‐Fluoro‐4‐thio‐2′‐O‐methyluridine

Nowak‐Karnowska, J., Chebib, Z., Milecki, J., Franzen, S., & Skalski, B. (2014, August 8). ChemBioChem, Vol. 15, pp. 2045–2049.

Peroxygenase and Oxidase Activities of Dehaloperoxidase-Hemoglobin from Amphitrite ornata

Journal of the American Chemical Society, 136(22), 7914–7925.

Photochemistry of 6-amino-2-azido, 2-amino-6-azido and 2,6-diazido analogues of purine ribonucleosides in aqueous solutions

Komodziński, K., Lepczyńska, J., Gdaniec, Z., Bartolotti, L., Delley, B., Franzen, S., & Skalski, B. (2014, January 6). Photochemical & Photobiological Sciences, Vol. 13, pp. 563–573.

Self-Assembley of Dehaloperoxidase-Hemoglobin Probed by Backbone Dynamics using NMR Relaxation Experiments and Molecular Dynamics Simulation

Biophysical Journal, 106(2), 466a.

The coupling of tautomerization to hydration in the transition state on the pyrimidine photohydration reaction path

Franzen, S., Skalski, B., Bartolotti, L., & Delley, B. (2014, August 1). Physical Chemistry Chemical Physics, Vol. 16, pp. 20164–20174.

Comment on ‘Cooperativity between two selected RNA Pdases in the synthesis of Pd nanoparticles’ by J. L. Rouge et al., J. Mater. Chem., 2010, 20, 8394–8398

Franzen, S. (2013, January 1). Journal of Materials Chemistry B, Vol. 1, pp. 6339–6341.

Crystals: The Formation of Pd Nanocrystals from Pd2(dba)3Microcrystals (Part. Part. Syst. Charact. 3/2013)

Particle & Particle Systems Characterization, 30(3), 298–298.

Functional Consequences of the Open Distal Pocket of Dehaloperoxidase-Hemoglobin Observed by Time-Resolved X-ray Crystallography

Zhao, J., Srajer, V., & Franzen, S. (2013, October 11). Biochemistry, Vol. 52, pp. 7943–7950.

Kinetic Study of the Inhibition Mechanism of Dehaloperoxidase-Hemoglobin A by 4-Bromophenol

Zhao, J., & Franzen, S. (2013, June 10). The Journal of Physical Chemistry B, Vol. 117, pp. 8301–8309.

Mid-infrared surface plasmon resonance in zinc oxide semiconductor thin films

Applied Physics Letters, 102(5), 051111.

Role of Polarity of the Distal Pocket in the Control of Inhibitor Binding in Dehaloperoxidase-Hemoglobin

Plummer, A., Thompson, M. K., & Franzen, S. (2013, March 12). Biochemistry, Vol. 52, pp. 2218–2227.

Structural and Kinetic Study of an Internal Substrate Binding Site in Dehaloperoxidase-Hemoglobin A from Amphitrite ornata

Zhao, J., Serrano, V., Zhao, J., Le, P., & Franzen, S. (2013, March 12). Biochemistry, Vol. 52, pp. 2427–2439.

The Formation of Pd Nanocrystals from Pd2(dba)3Microcrystals

Particle & Particle Systems Characterization, 30(3), 280–286.

The Regulatory Implications of Hydroquinone for the Multifunctional Enzyme Dehaloperoxidase-Hemoglobin from Amphitrite ornata

Zhao, J., Zhao, J., & Franzen, S. (2013, November 1). The Journal of Physical Chemistry B, Vol. 117, pp. 14615–14624.

The role of T56 in controlling the flexibility of the distal histidine in dehaloperoxidase-hemoglobin from Amphitrite ornata

Jiang, S., Wright, I., Swartz, P., & Franzen, S. (2013, June 20). Biochimica Et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1834, pp. 2020–2029.

A Resonance Raman Enhancement Mechanism for Axial Vibrational Modes in the Pyridine Adduct of Myoglobin Proximal Cavity Mutant (H93G)

The Journal of Physical Chemistry B, 116(35), 10514–10521.

Catalytic efficiency of dehaloperoxidase A is controlled by electrostatics – application of the vibrational Stark effect to understand enzyme kinetics

Schkolnik, G., Utesch, T., Zhao, J., Jiang, S., Thompson, M. K., Mroginski, M.-A., … Franzen, S. (2012, December 19). Biochemical and Biophysical Research Communications, Vol. 430, pp. 1011–1015.

Infrared surface plasmon resonance of AZO-Ag-AZO sandwich thin films

Guske, J. T., Brown, J., Welsh, A., & Franzen, S. (2012, September 25). Optics Express, Vol. 20, pp. 23215–23226.

Photoaddition of 5-Bromouracil to Uracil in Oligonucleotides Leading to 5,5′-Bipyrimidine-Type Adducts: Mechanism of the Photoreaction

Lepczyńska, J., Komodziński, K., Milecki, J., Kierzek, R., Gdaniec, Z., Franzen, S., & Skalski, B. (2012, November 27). The Journal of Organic Chemistry, Vol. 77, pp. 11362–11367.

Study of the electrostatic effects of mutations on the surface of dehaloperoxidase-hemoglobin A

Zhao, J., Rowe, J., Franzen, J., He, C., & Franzen, S. (2012, March 17). Biochemical and Biophysical Research Communications, Vol. 420, pp. 733–737.

The Role of the Distal Histidine in H2O2 Activation and Heme Protection in both Peroxidase and Globin Functions

The Journal of Physical Chemistry B, 116(40), 12065–12077.

The dehaloperoxidase paradox

Biochimica Et Biophysica Acta (BBA) - Proteins and Proteomics, 1824(4), 578–588.

Thin-layer spectroelectrochemistry of the Fe(III)/Fe(II) redox reaction of dehaloperoxidase-hemoglobin

D’Antonio, E. L., Bowden, E. F., & Franzen, S. (2012, January 10). Journal of Electroanalytical Chemistry, Vol. 668, pp. 37–43.

Vibrational Stark Effect of the Electric-Field Reporter 4-Mercaptobenzonitrile as a Tool for Investigating Electrostatics at Electrode/SAM/Solution Interfaces

Schkolnik, G., Salewski, J., Millo, D., Zebger, I., Franzen, S., & Hildebrandt, P. (2012, June 18). International Journal of Molecular Sciences, Vol. 13, pp. 7466–7482.

5-Fluoro-4-thiouridine phosphoramidite: New synthon for introducing photoaffinity label into oligodeoxynucleotides

Milecki, J., Nowak, J., Skalski, B., & Franzen, S. (2011, August 22). Bioorganic & Medicinal Chemistry, Vol. 19, pp. 6098–6106.

A comparison of peptide and folate receptor targeting of cancer cells: from single agent to nanoparticle

Franzen, S. (2011, February 10). Expert Opinion on Drug Delivery, Vol. 8, pp. 281–298.

Analysis of RNA-Mediated Materials Synthesis Using Magnetic Selection

Franzen, S., & Leonard, D. N. (2011, April 26). The Journal of Physical Chemistry C, Vol. 115, pp. 9335–9343.

Characterizing the Molecular Order of Phosphonic Acid Self-Assembled Monolayers on Indium Tin Oxide Surfaces

Losego, M. D., Guske, J. T., Efremenko, A., Maria, J.-P., & Franzen, S. (2011, August 24). Langmuir, Vol. 27, pp. 11883–11888.

Decay of Compound ES in Dehaloperoxidase-Hemoglobin

Biophysical Journal, 100(3), 194a.

Degradation of sulfide by dehaloperoxidase-hemoglobin from Amphitrite ornata

Nicoletti, F. P., Thompson, M. K., Franzen, S., & Smulevich, G. (2011, February 4). JBIC Journal of Biological Inorganic Chemistry, Vol. 16, pp. 611–619.

Dehaloperoxidase-Hemoglobin from Amphitrite ornata Is Primarily a Monomer in Solution

Thompson, M. K., Franzen, S., Davis, M. F., Oliver, R. C., & Krueger, J. K. (2011, March 21). The Journal of Physical Chemistry B, Vol. 115, pp. 4266–4272.

Determination of the Solubility Limit of Tris(dibenzylideneacetone) dipalladium(0) in Tetrahydrofuran/Water Mixtures

Franzen, S. (2011, February 24). Journal of Chemical Education, Vol. 88, pp. 619–623.

Distal Histidine Flexibility as the Key to the Reactivity of Dehaloperoxidase-Hemoglobin

Biophysical Journal, 100(3), 222a.

Effect of H55D Mutation on Kinetics and Structure of Dehaloperoxidase-Hemoglobin A

Biophysical Journal, 100(3), 221a.

Functional Consequences of the Creation of an Asp-His-Fe Triad in a 3/3 Globin

Biochemistry, 50(44), 9664–9680.

Making Substrates Out of Inhibitors: Distal Cavity Mutations in Dehaloperoxidase from Amphitrite Ornata

Biophysical Journal, 100(3), 222a.

Mass Spectrometric Detection of Targeting Peptide Bioconjugation to Red clover necrotic mosaic virus

Wang, R., Lockney, D. M., Goshe, M. B., & Franzen, S. (2011, August 22). Bioconjugate Chemistry, Vol. 22, pp. 1970–1982.

Molecular Activation by Peroxidases

Biophysical Journal, 100(3), 221a.

Mutagenesis Study on the Conformation of Distal Histidine in Dehaloperoxidase-Hemoglobin

Biophysical Journal, 100(3), 221a.

Nonphotochemical Base-Catalyzed Hydroxylation of 2,6-Dichloroquinone by H2O2Occurs by a Radical Mechanism

The Journal of Physical Chemistry B, 116(5), 1666–1676.

Resonance Raman enhancement of pyridine on Ag clusters

Chemical Physics, 397(1), 34–41.

Revisiting the Peroxidase Oxidation of 2,4,6-Trihalophenols: ESR Detection of Radical Intermediates

Sturgeon, B. E., Battenburg, B. J., Lyon, B. J., & Franzen, S. (2011, September 27). Chemical Research in Toxicology, Vol. 24, pp. 1862–1868.

Structural evidence for stabilization of inhibitor binding by a protein cavity in the dehaloperoxidase-hemoglobin from Amphitrite ornata

Biopolymers, 98(1), 27–35.

Ab Initio Calculation of Resonance Raman Cross Sections Based on Excited State Geometry Optimization

Gaff, J. F., Franzen, S., & Delley, B. (2010, September 30). The Journal of Physical Chemistry A, Vol. 114, pp. 11681–11690.

Block the Inhibitor Binding Site in the Interior of Dehaloperoxidase from Amphitrite Ornata

Biophysical Journal, 98(3), 641a.

Compound ES of Dehaloperoxidase Decays via Two Alternative Pathways Depending on the Conformation of the Distal Histidine

Journal of the American Chemical Society, 132(49), 17501–17510.

Determination of Separate Inhibitor and Substrate Binding Sites in the Dehaloperoxidase−Hemoglobin fromAmphitrite ornata,

Biochemistry, 49(6), 1199–1206.

Expanding the catalytic repertoire of ribozymes and deoxyribozymes beyond RNA substrates

[Review of ]. Current Opinion in Molecular Therapeutics, 12(2), 223–232.

Experimental and Computational Study of the Monomer-Dimer Equilibrium in Dehaloperoxidase from Amphitrite Ornata

Biophysical Journal, 98(3), 640a.

Internal Binding of Halogenated Phenols in Dehaloperoxidase-Hemoglobin Inhibits Peroxidase Function

Thompson, M. K., Davis, M. F., Serrano, V., Nicoletti, F. P., Howes, B. D., Smulevich, G., & Franzen, S. (2010, September 1). Biophysical Journal, Vol. 99, pp. 1586–1595.

Kinetic Analysis of a Naturally Occurring Bioremediation Enzyme: Dehaloperoxidase-Hemoglobin from Amphitrite ornata

Ma, H., Thompson, M. K., Gaff, J., & Franzen, S. (2010, October 8). The Journal of Physical Chemistry B, Vol. 114, pp. 13823–13829.

New Insights into the Role of Distal Histidine Flexibility in Ligand Stabilization of Dehaloperoxidase−Hemoglobin from Amphitrite ornata

Nicoletti, F. P., Thompson, M. K., Howes, B. D., Franzen, S., & Smulevich, G. (2010, January 14). Biochemistry, Vol. 49, pp. 1903–1912.

Oxidative dechlorination of halogenated phenols catalyzed by two distinct enzymes: Horseradish peroxidase and dehaloperoxidase

Szatkowski, L., Thompson, M. K., Kaminski, R., Franzen, S., & Dybala-Defratyka, A. (2010, September 25). Archives of Biochemistry and Biophysics, Vol. 505, pp. 22–32.

Photoinduced Fluorescent Cross-Linking of 5-Chloro- and 5-Fluoro-4-thiouridines with Thymidine

Skalski, B., Taras-Goślińska, K., Dembska, A., Gdaniec, Z., & Franzen, S. (2010, January 5). The Journal of Organic Chemistry, Vol. 75, pp. 621–626.

Picosecond primary structural transition of the heme is retarded after nitric oxide binding to heme proteins

Kruglik, S. G., Yoo, B.-K., Franzen, S., Vos, M. H., Martin, J.-L., & Negrerie, M. (2010, July 19). Proceedings of the National Academy of Sciences, Vol. 107, pp. 13678–13683.

Spectroscopic and Mechanistic Investigations of Dehaloperoxidase B fromAmphitrite ornata

Biochemistry, 49(31), 6600–6616.

Structure of dehaloperoxidase B at 1.58 angstrom resolution and structural characterization of the AB dimer from Amphitrite ornata

Acta Crystallographica. Section D, Biological Crystallography, 66, 529–538.

The Red clover necrotic mosaic virus Capsid as a Multifunctional Cell Targeting Plant Viral Nanoparticle

Lockney, D. M., Guenther, R. N., Loo, L., Overton, W., Antonelli, R., Clark, J., … Franzen, S. (2010, December 2). Bioconjugate Chemistry, Vol. 22, pp. 67–73.

X-ray structure of the metcyano form of dehaloperoxidase from Amphitrite ornata: Evidence for photoreductive dissociation of the iron-cyanide bond

Acta Crystallographica. Section D, Biological Crystallography, 66, 770–782.

A role for hydrophobicity in a Diels–Alder reaction catalyzed by pyridyl-modified RNA

Gagnon, K. T., Ju, S.-Y., Goshe, M. B., Maxwell, E. S., & Franzen, S. (2009, March 20). Nucleic Acids Research, Vol. 37, pp. 3074–3082.