Stefan Franzen

Gonzalez-Delgado, J. M., Thompson, P. M., Andralojc, W., Gdaniec, Z., Ghiladi, R. A., & Franzen, S. (2024, April 2). Comparison of the Backbone Dynamics of Dehaloperoxidase-Hemoglobin Isoenzymes. JOURNAL OF PHYSICAL CHEMISTRY B, Vol. 4. https://doi.org/10.1021/acs.jpcb.3c07176

Aktar, M. S., Hill, R., Holbert, W., & Franzen, S. (2024, March). Decomposition of 2,4-dihalophenols by dehaloperoxidase activity and spontaneous reaction with hydrogen peroxide. JOURNAL OF INORGANIC BIOCHEMISTRY, Vol. 252. https://doi.org/10.1016/j.jinorgbio.2023.112473

Aktar, M. S., Serrano, V., Ghiladi, R., & Franzen, S. (2023). Comparative study of the binding and activation of 2,4-dichlorophenol by dehaloperoxidase A and B. JOURNAL OF INORGANIC BIOCHEMISTRY, 247. https://doi.org/10.1016/j.jinorgbio.2023.112332

Madhuresh, N. K. D., Nguyen, H., & Franzen, S. (2023). The divergent pH dependence of substrate turnover in dehaloperoxidases A and B. JOURNAL OF INORGANIC BIOCHEMISTRY, 238. https://doi.org/10.1016/j.jinorgbio.2022.112029

Gao, Y., Aspnes, D. E., & Franzen, S. (2022, January 10). Classical Model of Surface Enhanced Infrared Absorption (SEIRA) Spectroscopy. JOURNAL OF PHYSICAL CHEMISTRY A, Vol. 1. https://doi.org/10.1021/acs.jpca.1c08463

Thompson, M. K., Shay, M. R., Serrano, V., Dumarieh, R., Ghiladi, R. A., & Franzen, S. (2021). A new inhibition mechanism in the multifunctional catalytic hemoglobin dehaloperoxidase as revealed by the DHP A(V59W) mutant: A spectroscopic and crystallographic study. JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 25(7-8), 756–771. https://doi.org/10.1142/S1088424621500826

Gao, Y., Aspnes, D. E., & Franzen, S. (2020). Classical Correlation Model of Resonance Raman Spectroscopy. JOURNAL OF PHYSICAL CHEMISTRY A, 124(44), 9177–9186. https://doi.org/10.1021/acs.jpca.0c04401

Sachet, E., Aspnes, D. E., Maria, J.-P., & Franzen, S. (2020). Critical Test of the Interaction of Surface Plasmon Resonances with Molecular Vibrational Transitions. JOURNAL OF PHYSICAL CHEMISTRY A, 124(9), 1744–1753. https://doi.org/10.1021/acs.jpca.9b10835

Khamh, H., Sachet, E., Kelly, K., Maria, J.-P., & Franzen, S. (2018). [Review of As good as gold and better: conducting metal oxide materials for mid-infrared plasmonic applications]. JOURNAL OF MATERIALS CHEMISTRY C, 6(31), 8326–8342. https://doi.org/10.1039/c7tc05760a

Zhao, J., Xue, M., Gudanis, D., Gracz, H., Findenegg, G. H., Gdaniec, Z., & Franzen, S. (2018). Dynamics of dehaloperoxidase-hemoglobin A derived from NMR relaxation spectroscopy and molecular dynamics simulation. JOURNAL OF INORGANIC BIOCHEMISTRY, 181, 65–73. https://doi.org/10.1016/j.jinorgbio.2018.01.006

Wu, G., Zhao, J., Franzen, S., & Tsai, A. L. (2017). Bindings of NO, CO, and O-2 to multifunctional globin type dehaloperoxidase follow the 'sliding scale rule'. Biochemical Journal (London, England : 1984), 474, 3485–3498.

Wu, G., Zhao, J., Franzen, S., & Tsai, A.-L. (2017). Bindings of NO, CO, and O2 to multifunctional globin type dehaloperoxidase follow the ‘sliding scale rule.’ Biochemical Journal, 474(20), 3485–3498. https://doi.org/10.1042/BCJ20170515

McCombs, N. L., Moreno-Chicano, T., Carey, L. M., Franzen, S., Hough, M. A., & Ghiladi, R. A. (2017). Interaction of Azole-Based Environmental Pollutants with the Coelomic Hemoglobin from Amphitrite ornata: A Molecular Basis for Toxicity. Biochemistry, 56(17), 2294–2303. https://doi.org/10.1021/acs.biochem.7b00041

Thompson, S. T., Lamb, H. H., Delley, B., & Franzen, S. (2017). Vibrational spectroscopy of the double complex salt Pd(NH3)4(ReO4)2, a bimetallic catalyst precursor. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 173, 618–624. https://doi.org/10.1016/J.SAA.2016.10.011

Franzen, S., Ghiladi, R. A., Lebioda, L., & Dawson, J. (2016). Multi-functional hemoglobin dehaloperoxidases. Heme Peroxidases, (4), 218–244.

Kang, M., Losego, M., Sachet, E., Maria, J.-P., & Franzen, S. (2016). Near-Infrared Optical Extinction of Indium Tin Oxide Structures Prepared by Nanosphere Lithography. ACS PHOTONICS, 3(10), 1993–1999. https://doi.org/10.1021/acsphotonics.6b00649

Zhang, Z., Santos, A. P., Zhou, Q., Liang, L., Wang, Q., Wu, T., & Franzen, S. (2016). Steered molecular dynamics study of inhibitor binding in the internal binding site in dehaloperoxidase-hemoglobin. BIOPHYSICAL CHEMISTRY, 211, 28–38. https://doi.org/10.1016/j.bpc.2016.01.003

Franzen, S., Cochran, K. H., Weng, J., Bartolotti, L., & Delley, B. (2016). The quadrapolar character of the Markovnikov reaction transition state. CHEMICAL PHYSICS, 464, 46–54. https://doi.org/10.1016/j.chemphys.2015.11.001

Burns, E., Huang, T., Weare, W. W., Bartolotti, L., Wang, X., Yao, J., … Franzen, S. (2015). Aerobic oxidation of beta-isophorone by tetraphenylporphYrin catalysts in pyridine solution. JOURNAL OF MOLECULAR CATALYSIS A-CHEMICAL, 410, 110–120. https://doi.org/10.1016/j.molcata.2015.09.015

Zhao, J., Lu, C., & Franzen, S. (2015). Distinct Enzyme-Substrate Interactions Revealed by Two Dimensional Kinetic Comparison between Dehaloperoxidase-Hemoglobin and Horseradish Peroxidase. JOURNAL OF PHYSICAL CHEMISTRY B, 119(40), 12828–12837. https://doi.org/10.1021/acs.jpcb.5b07126

Sachet, E., Shelton, C. T., Harris, J. S., Gaddy, B. E., Irving, D. L., Curtarolo, S., … Maria, J.-P. (2015). Dysprosium-doped cadmium oxide as a gateway material for mid-infrared plasmonics. Nature Materials, 14(4), 414–420. https://doi.org/10.1038/NMAT4203

Zhao, J., Moretto, J., Le, P., & Franzen, S. (2015). Measurement of Internal Substrate Binding in Dehaloperoxidase-Hemoglobin by Competition with the Heme-Fluoride Binding Equilibrium. JOURNAL OF PHYSICAL CHEMISTRY B, 119(7), 2827–2838. https://doi.org/10.1021/jp512996v

Zhao, J., Serrano, V., & Franzen, S. (2014). A Model for the Flexibility of the Distal Histidine in Dehaloperoxidase-Hemoglobin A Based on X-ray Crystal Structures of the Carbon Monoxide Adduct. BIOCHEMISTRY, 53(15), 2474–2482. https://doi.org/10.1021/bi5001905

Guo, F., Franzen, S., Ye, L., Gu, J., & Yu, H. (2014). Controlling enantioselectivity of esterase in asymmetric hydrolysis of aryl prochiral diesters by introducing aromatic interactions. Biotechnology and Bioengineering, 111(9), 1729–1739. https://doi.org/10.1002/BIT.25249

Le, P., Zhao, J., & Franzen, S. (2014). Correlation of Heme Binding Affinity and Enzyme Kinetics of Dehaloperoxidase. BIOCHEMISTRY, 53(44), 6863–6877. https://doi.org/10.1021/bi5005975

Franzen, S., Zhao, J., & Gracz, H. (2014). Dynamics of Multifunctional Dehaloperoxidase Hemoglobin. Biophysical Journal, 106(2), 662a. https://doi.org/10.1016/J.BPJ.2013.11.3665

Nowak-Karnowska, J., Chebib, Z., Milecki, J., Franzen, S., & Skalski, B. (2014). Highly Efficient Fluorescent Interstrand Photo-crosslinking of DNA Duplexes Labeled with 5-Fluoro-4-thio-2 '-O-methyluridine. CHEMBIOCHEM, 15(14), 2045–2049. https://doi.org/10.1002/cbic.201402182

Barrios, D. A., D’Antonio, J., McCombs, N. L., Zhao, J., Franzen, S., Schmidt, A. C., … Ghiladi, R. A. (2014). Peroxygenase and Oxidase Activities of Dehaloperoxidase-Hemoglobin from Amphitrite ornata. Journal of the American Chemical Society, 136(22), 7914–7925. https://doi.org/10.1021/ja500293c

Komodzinski, K., Lepczynska, J., Gdaniec, Z., Bartolotti, L., Delley, B., Franzen, S., & Skalski, B. (2014). Photochemistry of 6-amino-2-azido, 2-amino-6-azido and 2,6-diazido analogues of purine ribonucleosides in aqueous solutions. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES, 13(3), 563–573. https://doi.org/10.1039/c3pp50385b

Zhao, J., Xue, M., Gracz, H., & Franzen, S. (2014). Self-Assembley of Dehaloperoxidase-Hemoglobin Probed by Backbone Dynamics using NMR Relaxation Experiments and Molecular Dynamics Simulation. Biophysical Journal, 106(2), 466a. https://doi.org/10.1016/J.BPJ.2013.11.2638

Franzen, S., Skalski, B., Bartolotti, L., & Delley, B. (2014). The coupling of tautomerization to hydration in the transition state on the pyrimidine photohydration reaction path. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 16(37), 20164–20174. https://doi.org/10.1039/c4cp02160f

Schkolnik, G., Utesch, T., Zhao, J., Jiang, S., Thompson, M. K., Mroginski, M.-A., … Franzen, S. (2013). Catalytic efficiency of dehaloperoxidase A is controlled by electrostatics - application of the vibrational Stark effect to understand enzyme kinetics. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 430(3), 1011–1015. https://doi.org/10.1016/j.bbrc.2012.12.047

Franzen, S. (2013). Comment on 'Cooperativity between two selected RNA Pdases in the synthesis of Pd nanoparticles' by J. L. Rouge et al., J. Mater. Chem., 2010, 20, 8394-8398. JOURNAL OF MATERIALS CHEMISTRY B, Vol. 1, pp. 6339–6341. https://doi.org/10.1039/c3tb20820f

Chung, S., Leonard, D. N., Altoe, V., Aloni, S., De Yoreo, J. J., & Franzen, S. (2013). Crystals: The Formation of Pd Nanocrystals from Pd2(dba)3Microcrystals (Part. Part. Syst. Charact. 3/2013). Particle & Particle Systems Characterization, 30(3), 298–298. https://doi.org/10.1002/PPSC.201370010

Zhao, J., Srajer, V., & Franzen, S. (2013). Functional Consequences of the Open Distal Pocket of Dehaloperoxidase-Hemoglobin Observed by Time-Resolved X-ray Crystallography. BIOCHEMISTRY, 52(45), 7943–7950. https://doi.org/10.1021/bi401118q

Zhao, J., & Franzen, S. (2013). Kinetic Study of the Inhibition Mechanism of Dehaloperoxidase-Hemoglobin A by 4-Bromophenol. JOURNAL OF PHYSICAL CHEMISTRY B, 117(28), 8301–8309. https://doi.org/10.1021/jp3116353

Sachet, E., Losego, M. D., Guske, J., Franzen, S., & Maria, J.-P. (2013). Mid-infrared surface plasmon resonance in zinc oxide semiconductor thin films. Applied Physics Letters, 102(5), 051111. https://doi.org/10.1063/1.4791700

Plummer, A., Thompson, M. K., & Franzen, S. (2013). Role of Polarity of the Distal Pocket in the Control of Inhibitor Binding in Dehaloperoxidase-Hemoglobin. BIOCHEMISTRY, 52(13), 2218–2227. https://doi.org/10.1021/bi301509r

Zhao, J., Serrano, V., Zhao, J., Le, P., & Franzen, S. (2013). Structural and Kinetic Study of an Internal Substrate Binding Site in Dehaloperoxidase-Hemoglobin A from Amphitrite ornata. BIOCHEMISTRY, 52(14), 2427–2439. https://doi.org/10.1021/bi301307f

Chung, S., Leonard, D. N., Altoe, V., Aloni, S., De Yoreo, J. J., & Franzen, S. (2013). The Formation of Pd Nanocrystals from Pd2(dba)3Microcrystals. Particle & Particle Systems Characterization, 30(3), 280–286. https://doi.org/10.1002/ppsc.201200114

Zhao, J., Zhao, J., & Franzen, S. (2013). The Regulatory Implications of Hydroquinone for the Multifunctional Enzyme Dehaloperoxidase-Hemoglobin from Amphitrite ornata. JOURNAL OF PHYSICAL CHEMISTRY B, 117(47), 14615–14624. https://doi.org/10.1021/jp407663n

Jiang, S., Wright, I., Swartz, P., & Franzen, S. (2013). The role of T56 in controlling the flexibility of the distal histidine in dehaloperoxidase-hemoglobin from Amphitrite ornata. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 1834(10), 2020–2029. https://doi.org/10.1016/j.bbapap.2013.06.005

Franzen, S., Brown, D., Gaff, J., & Delley, B. (2012). A Resonance Raman Enhancement Mechanism for Axial Vibrational Modes in the Pyridine Adduct of Myoglobin Proximal Cavity Mutant (H93G). The Journal of Physical Chemistry B, 116(35), 10514–10521. https://doi.org/10.1021/jp302049p

Guske, J. T., Brown, J., Welsh, A., & Franzen, S. (2012). Infrared surface plasmon resonance of AZO-Ag-AZO sandwich thin films. OPTICS EXPRESS, 20(21), 23215–23226. https://doi.org/10.1364/oe.20.023215

Franzen, S., Sasan, K., Sturgeon, B. E., Lyon, B. J., Battenburg, B. J., Gracz, H., … Ghiladi, R. (2012). Nonphotochemical Base-Catalyzed Hydroxylation of 2,6-Dichloroquinone by H2O2Occurs by a Radical Mechanism. The Journal of Physical Chemistry B, 116(5), 1666–1676. https://doi.org/10.1021/jp208536x

Lepczynska, J., Komodzinski, K., Milecki, J., Kierzek, R., Gdaniec, Z., Franzen, S., & Skalski, B. (2012). Photoaddition of 5-Bromouracil to Uracil in Oligonucleotides Leading to 5,5 '-Bipyrimidine-Type Adducts: Mechanism of the Photoreaction. JOURNAL OF ORGANIC CHEMISTRY, 77(24), 11362–11367. https://doi.org/10.1021/jo3021067

Gaff, J., & Franzen, S. (2012). Resonance Raman enhancement of pyridine on Ag clusters. Chemical Physics, 397(1), 34–41. https://doi.org/10.1016/j.chemphys.2011.12.005

Zhao, J., Rowe, J., Franzen, J., He, C., & Franzen, S. (2012). Study of the electrostatic effects of mutations on the surface of dehaloperoxidase-hemoglobin A. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 420(4), 733–737. https://doi.org/10.1016/j.bbrc.2012.03.053

Zhao, J., de Serrano, V., Dumarieh, R., Thompson, M., Ghiladi, R. A., & Franzen, S. (2012). The Role of the Distal Histidine in H2O2 Activation and Heme Protection in both Peroxidase and Globin Functions. The Journal of Physical Chemistry B, 116(40), 12065–12077. https://doi.org/10.1021/jp300014b

Franzen, S., Thompson, M. K., & Ghiladi, R. A. (2012). The dehaloperoxidase paradox. Biochimica Et Biophysica Acta (BBA) - Proteins and Proteomics, 1824(4), 578–588. https://doi.org/10.1016/j.bbapap.2011.12.008

Edward L. D'Antonio, Bowden, E. F., & Franzen, S. (2012). Thin-layer spectroelectrochemistry of the Fe(III)/Fe(II) redox reaction of dehaloperoxidase-hemoglobin. JOURNAL OF ELECTROANALYTICAL CHEMISTRY, 668, 37–43. https://doi.org/10.1016/j.jelechem.2011.12.015

Schkolnik, G., Salewski, J., Millo, D., Zebger, I., Franzen, S., & Hildebrandt, P. (2012). Vibrational Stark Effect of the Electric-Field Reporter 4-Mercaptobenzonitrile as a Tool for Investigating Electrostatics at Electrode/SAM/Solution Interfaces. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 13(6), 7466–7482. https://doi.org/10.3390/ijms13067466

Milecki, J., Nowak, J., Skalski, B., & Franzen, S. (2011). 5-Fluoro-4-thiouridine phosphoramidite: New synthon for introducing photoaffinity label into oligodeovnucleotides. BIOORGANIC & MEDICINAL CHEMISTRY, 19(20), 6098–6106. https://doi.org/10.1016/j.bmc.2011.08.035

Franzen, S. (2011). [Review of A comparison of peptide and folate receptor targeting of cancer cells: from single agent to nanoparticle]. EXPERT OPINION ON DRUG DELIVERY, 8(3), 281–298. https://doi.org/10.1517/17425247.2011.554816

Franzen, S., & Leonard, D. N. (2011). Analysis of RNA-Mediated Materials Synthesis Using Magnetic Selection. JOURNAL OF PHYSICAL CHEMISTRY C, 115(19), 9335–9343. https://doi.org/10.1021/jp108689v

Losego, M. D., Guske, J. T., Efremenko, A., Maria, J.-P., & Franzen, S. (2011). Characterizing the Molecular Order of Phosphonic Acid Self-Assembled Monolayers on Indium Tin Oxide Surfaces. LANGMUIR, 27(19), 11883–11888. https://doi.org/10.1021/la201161q

Thompson, M. K., Franzen, S., Ghiladi, R. A., Reeder, B. J., & Svistunenko, D. A. (2011). Decay of Compound ES in Dehaloperoxidase-Hemoglobin. Biophysical Journal, 100(3), 194a. https://doi.org/10.1016/j.bpj.2010.12.1275

Nicoletti, F. P., Thompson, M. K., Franzen, S., & Smulevich, G. (2011). Degradation of sulfide by dehaloperoxidase-hemoglobin from Amphitrite ornata. JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 16(4), 611–619. https://doi.org/10.1007/s00775-011-0762-2

Thompson, M. K., Franzen, S., Davis, M. F., Oliver, R. C., & Krueger, J. K. (2011). Dehaloperoxidase-Hemoglobin from Amphitrite ornata Is Primarily a Monomer in Solution. JOURNAL OF PHYSICAL CHEMISTRY B, 115(14), 4266–4272. https://doi.org/10.1021/jp201156r

Franzen, S. (2011). Determination of the Solubility Limit of Tris(dibenzylideneacetone) dipalladium(0) in Tetrahydrofuran/Water Mixtures. JOURNAL OF CHEMICAL EDUCATION, 88(5), 619–623. https://doi.org/10.1021/ed100123d

Thompson, M., & Franzen, S. (2011). Distal Histidine Flexibility as the Key to the Reactivity of Dehaloperoxidase-Hemoglobin. Biophysical Journal, 100(3), 222a. https://doi.org/10.1016/j.bpj.2010.12.1426

Zhao, J., de Serrano, V., Dumarieh, R., Thompson, M., & Franzen, S. (2011). Effect of H55D Mutation on Kinetics and Structure of Dehaloperoxidase-Hemoglobin A. Biophysical Journal, 100(3), 221a. https://doi.org/10.1016/j.bpj.2010.12.1421

D’Antonio, E. L., D’Antonio, J., de Serrano, V., Gracz, H., Thompson, M. K., Ghiladi, R. A., … Franzen, S. (2011). Functional Consequences of the Creation of an Asp-His-Fe Triad in a 3/3 Globin. Biochemistry, 50(44), 9664–9680. https://doi.org/10.1021/bi201368u

Plummer, A. M., Thompson, M. K., & Franzen, S. (2011). Making Substrates Out of Inhibitors: Distal Cavity Mutations in Dehaloperoxidase from Amphitrite Ornata. Biophysical Journal, 100(3), 222a. https://doi.org/10.1016/j.bpj.2010.12.1424

Wang, R., Lockney, D. M., Goshe, M. B., & Franzen, S. (2011). Mass Spectrometric Detection of Targeting Peptide Bioconjugation to Red clover necrotic mosaic virus. BIOCONJUGATE CHEMISTRY, 22(10), 1970–1982. https://doi.org/10.1021/bc2001769

Sasan, K., & Franzen, S. (2011). Molecular Activation by Peroxidases. Biophysical Journal, 100(3), 221a. https://doi.org/10.1016/j.bpj.2010.12.1418

Jiang, S., & Franzen, S. (2011). Mutagenesis Study on the Conformation of Distal Histidine in Dehaloperoxidase-Hemoglobin. Biophysical Journal, 100(3), 221a. https://doi.org/10.1016/j.bpj.2010.12.1420

Szatkowski, L., Thompson, M. K., Kaminski, R., Franzen, S., & Dybala-Defratyka, A. (2011). Oxidative dechlorination of halogenated phenols catalyzed by two distinct enzymes: Horseradish peroxidase and dehaloperoxidase. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 505(1), 22–32. https://doi.org/10.1016/j.abb.2010.09.018

Sturgeon, B. E., Battenburg, B. J., Lyon, B. J., & Franzen, S. (2011). Revisiting the Peroxidase Oxidation of 2,4,6-Trihalophenols: ESR Detection of Radical Intermediates. CHEMICAL RESEARCH IN TOXICOLOGY, 24(11), 1862–1868. https://doi.org/10.1021/tx200215r

de Serrano, V., & Franzen, S. (2011). Structural evidence for stabilization of inhibitor binding by a protein cavity in the dehaloperoxidase-hemoglobin from Amphitrite ornata. Biopolymers, 98(1), 27–35. https://doi.org/10.1002/bip.21674

Lockney, D. M., Guenther, R. N., Loo, L., Overton, W., Antonelli, R., Clark, J., … Franzen, S. (2011). The Red clover necrotic mosaic virus Capsid as a Multifunctional Cell Targeting Plant Viral Nanoparticle. BIOCONJUGATE CHEMISTRY, 22(1), 67–73. https://doi.org/10.1021/bc100361z

Gaff, J. F., Franzen, S., & Delley, B. (2010). Ab Initio Calculation of Resonance Raman Cross Sections Based on Excited State Geometry Optimization. JOURNAL OF PHYSICAL CHEMISTRY A, 114(43), 11681–11690. https://doi.org/10.1021/jp103321x

Thompson, M. K., Parnell, J. M., & Franzen, S. (2010). Block the Inhibitor Binding Site in the Interior of Dehaloperoxidase from Amphitrite Ornata. Biophysical Journal, 98(3), 641a. https://doi.org/10.1016/j.bpj.2009.12.3513

Thompson, M. K., Franzen, S., Ghiladi, R. A., Reeder, B. J., & Svistunenko, D. A. (2010). Compound ES of Dehaloperoxidase Decays via Two Alternative Pathways Depending on the Conformation of the Distal Histidine. Journal of the American Chemical Society, 132(49), 17501–17510. https://doi.org/10.1021/ja106620q

Davis, M. F., Bobay, B. G., & Franzen, S. (2010). Determination of Separate Inhibitor and Substrate Binding Sites in the Dehaloperoxidase−Hemoglobin fromAmphitrite ornata, Biochemistry, 49(6), 1199–1206. https://doi.org/10.1021/bi9018576

Franzen, S. (2010). [Review of Expanding the catalytic repertoire of ribozymes and deoxyribozymes beyond RNA substrates]. Current Opinion in Molecular Therapeutics, 12(2), 223–232.

Franzen, S., de Serrano, V., Oliver, R. C., & Krueger, J. (2010). Experimental and Computational Study of the Monomer-Dimer Equilibrium in Dehaloperoxidase from Amphitrite Ornata. Biophysical Journal, 98(3), 640a. https://doi.org/10.1016/j.bpj.2009.12.3506

Thompson, M. K., Davis, M. F., Serrano, V., Nicoletti, F. P., Howes, B. D., Smulevich, G., & Franzen, S. (2010). Internal Binding of Halogenated Phenols in Dehaloperoxidase-Hemoglobin Inhibits Peroxidase Function. BIOPHYSICAL JOURNAL, 99(5), 1586–1595. https://doi.org/10.1016/j.bpj.2010.05.041

Ma, H., Thompson, M. K., Gaff, J., & Franzen, S. (2010). Kinetic Analysis of a Naturally Occurring Bioremediation Enzyme: Dehaloperoxidase-Hemoglobin from Amphitrite ornata. JOURNAL OF PHYSICAL CHEMISTRY B, 114(43), 13823–13829. https://doi.org/10.1021/jp1014516

Nicoletti, F. P., Thompson, M. K., Howes, B. D., Franzen, S., & Smulevich, G. (2010). New Insights into the Role of Distal Histidine Flexibility in Ligand Stabilization of Dehaloperoxidase-Hemoglobin from Amphitrite ornata. BIOCHEMISTRY, 49(9), 1903–1912. https://doi.org/10.1021/bi9020567

Skalski, B., Taras-Goslinska, K., Dembska, A., Gdaniec, Z., & Franzen, S. (2010). Photoinduced Fluorescent Cross-Linking of 5-Chloro- and 5-Fluoro-4-thiouridines with Thymidine. JOURNAL OF ORGANIC CHEMISTRY, 75(3), 621–626. https://doi.org/10.1021/jo902136k

Kruglik, S. G., Yoo, B.-K., Franzen, S., Vos, M. H., Martin, J.-L., & Negrerie, M. (2010). Picosecond primary structural transition of the heme is retarded after nitric oxide binding to heme proteins. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 107(31), 13678–13683. https://doi.org/10.1073/pnas.0912938107

D’Antonio, J., D’Antonio, E. L., Thompson, M. K., Bowden, E. F., Franzen, S., Smirnova, T., & Ghiladi, R. A. (2010). Spectroscopic and Mechanistic Investigations of Dehaloperoxidase B fromAmphitrite ornata. Biochemistry, 49(31), 6600–6616. https://doi.org/10.1021/bi100407v

Serrano, V., D'Antonio, J., Franzen, S., & Ghiladi, R. A. (2010). Structure of dehaloperoxidase B at 1.58 angstrom resolution and structural characterization of the AB dimer from Amphitrite ornata. Acta Crystallographica. Section D, Biological Crystallography, 66, 529–538.

Serrano, V. S., Davis, M. F., Gaff, J. F., Zhang, Q., Chen, Z., D'Antonio, E. L., … Franzen, S. (2010). X-ray structure of the metcyano form of dehaloperoxidase from Amphitrite ornata: Evidence for photoreductive dissociation of the iron-cyanide bond. Acta Crystallographica. Section D, Biological Crystallography, 66, 770–782.

Gagnon, K. T., Ju, S.-Y., Goshe, M. B., Maxwell, E. S., & Franzen, S. (2009). A role for hydrophobicity in a DielsAlder reaction catalyzed by pyridyl-modified RNA. NUCLEIC ACIDS RESEARCH, 37(9), 3074–3082. https://doi.org/10.1093/nar/gkp177

Feducia, J., Dumarieh, R., Gilvey, L. B. G., Smirnova, T., Franzen, S., & Ghiladi, R. A. (2009). Characterization of Dehaloperoxidase Compound ES and Its Reactivity with Trihalophenols†. Biochemistry, 48(5), 995–1005. https://doi.org/10.1021/bi801916j

Losego, M. D., Efremenko, A. Y., Rhodes, C. L., Cerruti, M. G., Franzen, S., & Maria, J.-P. (2009). Conductive oxide thin films: Model systems for understanding and controlling surface plasmon resonance. Journal of Applied Physics, 106(2), 024903. https://doi.org/10.1063/1.3174440

Gerber, R. W., Leonard, D. N., & Franzen, S. (2009). Conductive thin film multilayers of gold on glass formed by self-assembly of multiple size gold nanoparticles. THIN SOLID FILMS, 517(24), 6803–6808. https://doi.org/10.1016/j.tsf.2009.05.033

Davis, M. F., Gracz, H., Vendeix, F. A. P., Serrano, V., Somasundaram, A., Decatur, S. M., & Franzen, S. (2009). Different Modes of Binding of Mono-, Di-, and Trihalogenated Phenols to the Hemoglobin Dehaloperoxidase from Amphitrite ornata. BIOCHEMISTRY, 48(10), 2164–2172. https://doi.org/10.1021/bi801568s

Chen, Z., Serrano, V., Betts, L., & Franzen, S. (2009). Distal histidine conformational flexibility in dehaloperoxidase from Amphitrite ornata. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 65, 34–40. https://doi.org/10.1107/S0907444908036548

Gaff, J. F., & Franzen, S. (2009). Excited-State Geometry Method for Calculation of the Absolute Resonance Raman Cross Sections of the Aromatic Amino Acids. JOURNAL OF PHYSICAL CHEMISTRY A, 113(18), 5414–5422. https://doi.org/10.1021/jp809431k

Franzen, S. (2009). Intrinsic Limitations on the vertical bar E vertical bar(4) Dependence of the Enhancement Factor for Surface-Enhanced Raman Scattering. JOURNAL OF PHYSICAL CHEMISTRY C, 113(15), 5912–5919. https://doi.org/10.1021/jp808107h

Leonard, D. N., & Franzen, S. (2009). Is Pd-2(DBA)(3) a Feasible Precursor for the Synthesis of Pd Nanoparticles? JOURNAL OF PHYSICAL CHEMISTRY C, 113(29), 12706–12714. https://doi.org/10.1021/jp903417r

Franzen, S., Rhodes, C., Cerruti, M., Gerber, R. W., Losego, M., Maria, J.-P., & Aspnes, D. E. (2009). Plasmonic phenomena in indium tin oxide and ITO-Au hybrid films. OPTICS LETTERS, 34(18), 2867–2869. https://doi.org/10.1364/OL.34.002867

Thompson, M. K., Davis, M. F., & Franzen, S. (2009). Resonance Raman Probes of the Internal Binding Pocket of Dehaloperoxidase from Amphitrite ornata. Biophysical Journal, 96(3), 437a. https://doi.org/10.1016/j.bpj.2008.12.2239

Ghiladi, R. A., Dumarieh, R., Thompson, M., Wang, Z., Smirnova, T., & Franzen, S. (2009). Spectroscopic Probes of the Reactive Intermediates of Dehaloperoxidase from Amphitrite ornata. Biophysical Journal, 96(3), 437a. https://doi.org/10.1016/j.bpj.2008.12.2240

Franzen, S., de Serrano, V., Davis, M. F., & Thompson, M. (2009). Structural Probes Of Reactive Intermediates Of Dehaloperoxidase From Amphitrite ornata. Biophysical Journal, 96(3), 558a. https://doi.org/10.1016/j.bpj.2008.12.3663

Smirnova, T. I., Davis, M. F., Weber, R. T., & Franzen, S. (2009). Substrate binding triggers a switch in the iron coordination in dehaloperoxidase from Amphitrite Ornate. Biophysical Journal, 96(3), 437a. https://doi.org/10.1016/j.bpj.2008.12.2241

Franzen, S., & Lommel, S. A. (2009). [Review of Targeting cancer with 'smart bombs': equipping plant virus nanoparticles for a 'seek and destroy' mission]. NANOMEDICINE, 4(5), 575–588. https://doi.org/10.2217/nnm.09.23

Rhodes, C. L., Lappi, S., Fischer, D., Sambasivan, S., Genzer, J., & Franzen, S. (2008). Characterization of monolayer formation on aluminum-doped zinc oxide thin films. LANGMUIR, 24(2), 433–440. https://doi.org/10.1021/la701741m

Miksovska, J., Horsa, S., Davis, M. F., & Franzen, S. (2008). Conformational Dynamics Associated with Photodissociation of CO from Dehaloperoxidase Studied Using Photoacoustic Calorimetry. BIOCHEMISTRY, 47(44), 11510–11517. https://doi.org/10.1021/bi8012033

Rhodes, C., Cerruti, M., Efremenko, A., Losego, M., Aspnes, D. E., Maria, J.-P., & Franzen, S. (2008). Dependence of plasmon polaritons on the thickness of indium tin oxide thin films. Journal of Applied Physics, 103(9), 093108. https://doi.org/10.1063/1.2908862

Nienhaus, K., Nickel, E., Davis, M. F., Franzen, S., & Nienhaus, G. U. (2008). Determinants of Substrate Internalization in the Distal Pocket of Dehaloperoxidase Hemoglobin of Amphitrite ornata. BIOCHEMISTRY, 47(49), 12985–12994. https://doi.org/10.1021/bi801564r

Liu, Y., & Franzen, S. (2008). Factors determining the efficacy of nuclear delivery of antisense oligonucleotides by gold nanoparticles. BIOCONJUGATE CHEMISTRY, 19(5), 1009–1016. https://doi.org/10.1021/bc700421u

Loo, L. N., Guenther, R. H., Lommel, S. A., & Franzen, S. (2008). Infusion of dye molecules into Red clover necrotic mosaic virus. CHEMICAL COMMUNICATIONS, (1), 88–90. https://doi.org/10.1039/b714748a

Leonard, D. N., Cerruti, M., Duscher, G., & Franzen, S. (2008). Interfacial and solvent effects govern the formation of tris(dibenzylidenacetone)dipalladium(0) microstructures. LANGMUIR, 24(15), 7803–7809. https://doi.org/10.1021/la801039j

Rhodes, C. L., Brewer, S. H., Folmer, J., & Franzen, S. (2008). Investigation of hexadecanethiol self-assembled monolayers on cadmium tin oxide thin films. THIN SOLID FILMS, 516(8), 1838–1842. https://doi.org/10.1016/j.tsf.2007.08.098

Franzen, S., Feldheim, D. L., Tkachenko, A. G., Godek, M. L., Ryan, J. A., & Anderson, M. F. (2008). Nanoparticle delivery vehicle. Washington, DC: U.S. Patent and Trademark Office.

Smirnova, T. I., Weber, R. T., Davis, M. F., & Franzen, S. (2008). Substrate binding triggers a switch in the iron coordination in dehaloperoxidase from Amphitrite ornata: HYSCORE experiments. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 130(7), 2128-+. https://doi.org/10.1021/ja0772952

Franzen, S. (2008). Surface plasmon polaritons and screened plasma absorption in indium tin oxide compared to silver and gold. JOURNAL OF PHYSICAL CHEMISTRY C, 112(15), 6027–6032. https://doi.org/10.1021/jp7097813

Serrano, V., Liu, W., & Franzen, S. (2007). An infrared spectroscopic study of the conformational transition of elastin-like polypeptides. BIOPHYSICAL JOURNAL, 93(7), 2429–2435. https://doi.org/10.1529/biophysj.106.100594

Ryan, J. A., Overton, K. W., Speight, M. E., Oldenburg, C. M., Loo, L., Robarge, W., … Feldheim, D. L. (2007). Cellular uptake of gold nanoparticles passivated with BSA-SV40 large T antigen conjugates. ANALYTICAL CHEMISTRY, 79(23), 9150–9159. https://doi.org/10.1021/ac0715524

Moses, S., Brewer, S. H., Kraemer, S., Fuierer, R. R., Lowe, L. B., Agbasi, C., … Franzen, S. (2007). Detection of DNA hybridization on indium tin oxide surfaces. SENSORS AND ACTUATORS B-CHEMICAL, 125(2), 574–580. https://doi.org/10.1016/j.snb.2007.03.009

Loo, L. N., Guenther, R. H., Lommel, S. A., & Franzen, S. (2007). Encapsidation of nanoparticles by Red Clover Necrotic Mosaic Virus. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 129(36), 11111–11117. https://doi.org/10.1021/ja071896b

Cerruti, M., Rhodes, C., Losego, M., Efremenko, A., Maria, J.-P., Fischer, D., … Genzer, J. (2007). Influence of indium-tin oxide surface structure on the ordering and coverage of carboxylic acid and thiol monolayers. JOURNAL OF PHYSICS D-APPLIED PHYSICS, 40(14), 4212–4221. https://doi.org/10.1088/0022-3727/40/14/016

Kaufman, E. D., Belyea, J., Johnson, M. C., Nicholson, Z. M., Ricks, J. L., Shah, P. K., … Franzen, S. (2007). Probing protein adsorption onto mercaptoundecanoic acid stabilized gold nanoparticles and surfaces by quartz crystal microbalance and zeta-potential measurements. LANGMUIR, 23(11), 6053–6062. https://doi.org/10.1021/la063725a

Franzen, S., & Lappi, S. E. (2007). Single pass attenuated total reflection fourier transform infrared microscopy apparatus and method for identifying protein secondary structure, surface charge and binding affinity. Washington, DC: U.S. Patent and Trademark Office.

Liu, Y., Shipton, M. K., Ryan, J., Kaufman, E. D., Franzen, S., & Feldheim, D. L. (2007). Synthesis, stability, and cellular internalization of gold nanoparticles containing mixed peptide-poly(ethylene glycol) monolayers. ANALYTICAL CHEMISTRY, 79(6), 2221–2229. https://doi.org/10.1021/ac061578f

Franzen, S., Gilvey, L. B., & Belyea, J. L. (2007). The pH dependence of the activity of dehaloperoxidase from Amphitrite ornata. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 1774(1), 121–130. https://doi.org/10.1016/j.bbapap.2006.09.019

Franzen, S., Cerruti, M., Leonard, D. N., & Duscher, G. (2007). The role of selection pressure in RNA-mediated evolutionary materials synthesis. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 129(49), 15340–15346. https://doi.org/10.1021/ja076054r

Serrano, V., Chen, Z., Davis, M. F., & Franzen, S. (2007). X-ray crystal structural analysis of the binding site in the ferric and oxyferrous forms of the recombinant heme dehaloperoxidase cloned from Amphitrite ornata. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 63, 1094–1101. https://doi.org/10.1107/S0907444907043417

Loo, L., Guenther, R. H., Basnayake, V. R., Lommel, S. A., & Franzen, S. (2006). Controlled encapsidation of gold nanoparticles by a viral protein shell. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 128(14), 4502–4503. https://doi.org/10.1021/ja057332u

Cerruti, M. G., Sauthier, M., Leonard, D., Liu, D., Duscher, G., Feldheim, D. L., & Franzen, S. (2006). Gold and silica-coated gold nanoparticles as thermographic labels for DNA detection. ANALYTICAL CHEMISTRY, 78(10), 3282–3288. https://doi.org/10.1021/ac0600555

Franzen, S., Jasaitis, A., Belyea, J., Brewer, S. H., Casey, R., MacFarlane, A. W., … Martin, J.-L. (2006). Hydrophobic distal pocket affects NO-heme geminate recombination dynamics in dehaloperoxidase and H64V myoglobin. JOURNAL OF PHYSICAL CHEMISTRY B, 110(29), 14483–14493. https://doi.org/10.1021/jp056790m

Leonard, D. N., Jarausch, K. F., Cerruti, M. G., Duscher, G., Franzen, S., & Feldheim, D. L. (2006). Nanoscale Structural and Chemical Characterization of Silica Coated Gold Nanoparticles Using STEM 3D Imaging and EELS. Microscopy and Microanalysis, 12(S02), 602–603. https://doi.org/10.1017/S1431927606062684

Franzen, S., Belyea, J., Gilvey, L. B., Davis, M. F., Chaudhary, C. E., Sit, T. L., & Lommel, S. A. (2006). Proximal cavity, distal histidine, and substrate hydrogen-bonding mutations modulate the activity of Amphitrite ornata dehaloperoxidase. BIOCHEMISTRY, 45(30), 9085–9094. https://doi.org/10.1021/bi060020z

Belyea, J., Belyea, C. M., Lappi, S., & Franzen, S. (2006). Resonance Raman study of ferric heme adducts of dehaloperoxidase from Amphitrite ornata. BIOCHEMISTRY, 45(48), 14275–14284. https://doi.org/10.1021/bi0609218

Negrerie, M., Kruglik, S. G., Lambry, J. C., Vos, M. H., Martin, J. L., & Franzen, S. (2006). Role of heme iron coordination and protein structure in the dynamics and geminate rebinding of nitric oxide to the H93G myoglobin mutant - Implications for nitric oxide sensors. JOURNAL OF BIOLOGICAL CHEMISTRY, 281(15), 10389–10398. https://doi.org/10.1074/jbc.M513375200

Nienhaus, K., Deng, P., Belyea, J., Franzen, S., & Nienhaus, G. U. (2006). Spectroscopic study of substrate binding to the carbonmonoxy form of dehaloperoxidase from Amphitrite ornata. JOURNAL OF PHYSICAL CHEMISTRY B, 110(26), 13264–13276. https://doi.org/10.1021/jp060278z

Rhodes, C., Franzen, S., Maria, J.-P., Losego, M., Leonard, D. N., Laughlin, B., … Weibel, S. (2006). Surface plasmon resonance in conducting metal oxides. JOURNAL OF APPLIED PHYSICS, 100(5). https://doi.org/10.1063/1.2222070

Franzen, S., & Brewer, S. (2006). Surface plasmon resonance systems and methods having a variable charge density layer. Washington, DC: U.S. Patent and Trademark Office.

Bin-Salamon, S., Brewer, S. H., Depperman, E. C., Franzen, S., Kampf, J. W., Kirk, M. L., … Shultz, D. A. (2006). Testing Bridge-Mediated Differences in Dinuclear Valence Tautomeric Behavior. Inorganic Chemistry, 45(11), 4461–4467. https://doi.org/10.1021/ic060170y

Agbasi-Porter, C., Ryman-Rasmussen, J., Franzen, S., & Feldheim, D. (2006). Transcription inhibition using oligonucleotide-modified gold nanoparticles. BIOCONJUGATE CHEMISTRY, 17(5), 1178–1183. https://doi.org/10.1021/bc060100f

Glomm, W. R., Moses, S. J., Brennaman, M. K., Papanikolas, J. M., & Franzen, S. (2005). Detection of adsorption of Ru(II) and Os(II) polypyridyl complexes on gold and silver nanoparticles by single-photon counting emission measurements. JOURNAL OF PHYSICAL CHEMISTRY B, 109(2), 804–810. https://doi.org/10.1021/jp049184k

Brewer, S. H., Vu, D. M., Tang, Y. F., Li, Y., Franzen, S., Raleigh, D. P., & Dyer, R. B. (2005). Effect of modulating unfolded state structure on the folding kinetics of the villin headpiece subdomain. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(46), 16662–16667. https://doi.org/10.1073/pnas.0505432102

Belyea, J., Gilvey, L. B., Davis, M. F., Godek, M., Sit, T. L., Lommel, S. A., & Franzen, S. (2005). Enzyme function of the globin dehaloperoxidase from Amphitrite ornata is activated by substrate binding. BIOCHEMISTRY, 44(48), 15637–15644. https://doi.org/10.1021/bi051731k

Dyer, R. B., Maness, S. J., Franzen, S., Fesinmeyer, R. M., Olsen, K. A., & Andersen, N. H. (2005). Hairpin folding dynamics: The cold-denatured state is predisposed for rapid refolding. BIOCHEMISTRY, 44(30), 10406–10415. https://doi.org/10.1021/bi050698z

Brewer, S. H., Wicaksana, D., Maria, J.-P., Kingon, A. I., & Franzen, S. (2005). Investigation of the electrical and optical properties of iridium oxide by reflectance FTIR spectroscopy and density functional theory calculations. Chemical Physics, 313(1-3), 25–31. https://doi.org/10.1016/j.chemphys.2004.11.014

Brewer, S. H., Glomm, W. R., Johnson, M. C., Knag, M. K., & Franzen, S. (2005). Probing BSA binding to citrate-coated gold nanoparticles and surfaces. LANGMUIR, 21(20), 9303–9307. https://doi.org/10.1021/la050588t

Masternak, A., Wenska, G., Milecki, J., Skalski, B., & Franzen, S. (2005). Solvatochromism of a novel betaine dye derived from purine. JOURNAL OF PHYSICAL CHEMISTRY A, 109(5), 759–766. https://doi.org/10.1021/jp047098e

Bin-Salamon, S., Brewer, S., Franzen, S., Feldheim, D. L., Lappi, S., & Shultz, D. A. (2005). Supramolecular control of valence-tautomeric equilibrium on nanometer-scale gold clusters. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 127(15), 5328–5329. https://doi.org/10.1021/ja042520q

Nienhaus, K., Olson, J. S., Franzen, S., & Nienhaus, G. U. (2005). The origin of stark splitting in the initial photoproduct state of MbCO. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 127(1), 40–41. https://doi.org/10.1021/ja0466917

Polack, T., Ogilvie, J. P., Franzen, S., Vos, M. H., Joffre, M., Martin, J. L., & Alexandrou, A. (2004). CO vibration as a probe of ligand dissociation and transfer in myoglobin. PHYSICAL REVIEW LETTERS, 93(1). https://doi.org/10.1103/physrevlett.93.018102

Brewer, S. H., & Franzen, S. (2004). Calculation of the electronic and optical properties of indium tin oxide by density functional theory. CHEMICAL PHYSICS, 300(1-3), 285–293. https://doi.org/10.1016/j.chemphys.2003.11.039

Tkachenko, A. G., Xie, H., Liu, Y. L., Coleman, D., Ryan, J., Glomm, W. R., … Feldheim, D. L. (2004). Cellular trajectories of peptide-modified gold particle complexes: Comparison of nuclear localization signals and peptide transduction domains. BIOCONJUGATE CHEMISTRY, 15(3), 482–490. https://doi.org/10.1021/bc034189q

Moses, S., Brewer, S. H., Lowe, L. B., Lappi, S. E., Gilvey, L. B. G., Sauthier, M., … Franzen, S. (2004). Characterization of single- and double-stranded DNA on gold surfaces. LANGMUIR, 20(25), 11134–11140. https://doi.org/10.1021/la0492815

Smith, B. M., Lappi, S. E., Brewer, S. H., Dembowy, S., Belyea, J., & Franzen, S. (2004). Covalent attachment of a nickel nitrilotriacetic acid group to a germanium attenuated total reflectance element. LANGMUIR, 20(4), 1184–1188. https://doi.org/10.1021/la034194i

Shapkina, T., Lappi, S., Franzen, S., & Wollenzien, P. (2004). Efficiency and pattern of UV pulse laser-induced RNA-RNA cross-linking in the ribosome. NUCLEIC ACIDS RESEARCH, 32(4), 1518–1526. https://doi.org/10.1093/nar/gkh320

Lappi, S. E., & Franzen, S. (2004). Eigenvector mapping: a method for discerning solvent effects on vibrational spectra. Spectrochimica Acta. Part A, Molecular and Biomolecular Spectroscopy., 60(02-Jan), 357–370. https://doi.org/10.1016/S1386-1425(03)00248-8

Brewer, S. H., Allen, A. M., Lappi, S. E., Chasse, T. L., Briggman, K. A., Gorman, C. B., & Franzen, S. (2004). Infrared detection of a phenylboronic acid terminated alkane thiol monolayer on gold surfaces. LANGMUIR, 20(13), 5512–5520. https://doi.org/10.1021/la035037m

Lappi, S. E., Smith, B., & Franzen, S. (2004). Infrared spectra of (H2O)-O-16, (H2O)-O-18 and D2O in the liquid phase by single-pass attenuated total internal reflection spectroscopy. SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 60(11), 2611–2619. https://doi.org/10.1016/j.saa.2003.12.042

Ni, W. J., Kaur, G., Springsteen, G., Wang, B. H., & Franzen, S. (2004). Regulating the fluorescence intensity of an anthracene boronic acid system: a B-N bond or a hydrolysis mechanism? BIOORGANIC CHEMISTRY, 32(6), 571–581. https://doi.org/10.1016/j.bioorg.2004.06.004

Dyer, R. B., Maness, S. J., Peterson, E. S., Franzen, S., Fesinmeyer, R. M., & Andersen, N. H. (2004). The mechanism of beta-hairpin formation. BIOCHEMISTRY, 43(36), 11560–11566. https://doi.org/10.1021/bi049177m

Brewer, S. H., & Franzen, S. (2003). A quantitative theory and computational approach for the vibrational Stark effect. JOURNAL OF CHEMICAL PHYSICS, 119(2), 851–858. https://doi.org/10.1063/1.1578471

Franzen, S. (2003). Density functional calculation of a potential energy surface for alkane thiols on Au(111) as function of alkane chain length. CHEMICAL PHYSICS LETTERS, 381(3-4), 315–321. https://doi.org/10.1016/j.cplett.2003.08.126

Lowe, L. B., Brewer, S. H., Kramer, S., Fuierer, R. R., Qian, G. G., Agbasi-Porter, C. O., … Feldheim, D. L. (2003). Laser-induced temperature jump electrochemistry on gold nanoparticle-coated electrodes. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 125(47), 14258–14259. https://doi.org/10.1021/ja036672h

Tkachenko, A. G., Xie, H., Coleman, D., Glomm, W., Ryan, J., Anderson, M. F., … Feldheim, D. L. (2003). Multifunctional gold nanoparticle-peptide complexes for nuclear targeting. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 125(16), 4700–4701. https://doi.org/10.1021/ja0296935

Maness, S. J., Franzen, S., Gibbs, A. C., Causgrove, T. P., & Dyer, R. B. (2003). Nanosecond temperature jump relaxation dynamics of cyclic beta-hairpin peptides. BIOPHYSICAL JOURNAL, 84(6), 3874–3882. https://doi.org/10.1016/S0006-3495(03)75115-7

Franzen, S., & Shultz, D. A. (2003). New paradigm for design of high-spin organic molecules: The mechanism of spin-dependent delocalization in exchange-coupled, mixed-valent organic species. JOURNAL OF PHYSICAL CHEMISTRY A, 107(21), 4292–4299. https://doi.org/10.1021/jp0276000

Folmer, J. C. W., & Franzen, S. (2003). Study of polymer glasses by modulated differential scanning calorimetry in the undergraduate physical chemistry laboratory. JOURNAL OF CHEMICAL EDUCATION, 80(7), 813–818. https://doi.org/10.1021/ed080p813

Franzen, S., Ni, W. J., & Wang, B. H. (2003). Study of the mechanism of electron-transfer quenching by boron-nitrogen adducts in fluorescent sensors. JOURNAL OF PHYSICAL CHEMISTRY B, 107(47), 12942–12948. https://doi.org/10.1021/jp027457a

Franzen, S., & Stanley, R. J. (2002). A theoretical explanation for quantum yield failure in bacterial photosynthetic reaction centers. CHEMICAL PHYSICS, 276(2), 115–127. https://doi.org/10.1016/S0301-0104(01)00582-1

Franzen, S. (2002). An electrostatic model for the frequency shifts in the carbonmonoxy stretching band of myoglobin: Correlation of hydrogen bonding and the Stark tuning rate. Journal of the American Chemical Society, 124(44), 13271–13281. https://doi.org/10.1021/ja01778d

Franzen, S. (2002). Carbonmonoxy rebinding kinetics in H93G myoglobin: Separation of proximal and distal side effects. JOURNAL OF PHYSICAL CHEMISTRY B, 106(17), 4533–4542. https://doi.org/10.1021/jp015567w

Marinkovic, N. S., Huang, R., Bromberg, P., Sullivan, M., Toomey, J., Miller, L. M., … Chance, M. R. (2002). Center for Synchrotron Biosciences' U2B beamline: an international resource for biological infrared spectroscopy. JOURNAL OF SYNCHROTRON RADIATION, 9(2002 Jul), 189–197. https://doi.org/10.1107/S0909049502008543

Lappi, S. E., Collier, W., & Franzen, S. (2002). Density functional analysis of anharmonic contributions to adenine matrix isolation spectra. JOURNAL OF PHYSICAL CHEMISTRY A, 106(47), 11446–11455. https://doi.org/10.1021/jp026017g

Brewer, S. H., Anthireya, S. J., Lappi, S. E., Drapcho, D. L., & Franzen, S. (2002). Detection of DNA hybridization on gold surfaces by polarization modulation infrared reflection absorption spectroscopy. LANGMUIR, 18(11), 4460–4464. https://doi.org/10.1021/la025613z

Franzen, S., Fritsch, K., & Brewer, S. H. (2002). Experimental observation of anharmonic coupling of the heme-doming and iron-ligand out-of-plane vibrational modes confirmed by density functional theory. JOURNAL OF PHYSICAL CHEMISTRY B, 106(44), 11641–11646. https://doi.org/10.1021/jp0261197

Brewer, S. H., Brown, D. A., & Franzen, S. (2002). Formation of thiolate and phosphonate adlayers on indium-tin oxide: Optical and electronic characterization. Langmuir, 18(18), 6857–6865. https://doi.org/10.1021/la01572d

Franzen, S., Wallace-Williams, S. E., & Shreve, A. P. (2002). Heme charge-transfer band III is vibronically coupled to the soret band. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 124(24), 7146–7155. https://doi.org/10.1021/ja0172722

Brewer, S. H., & Franzen, S. (2002). Indium tin oxide plasma frequency dependence on sheet resistance and surface adlayers determined by reflectance FTIR spectroscopy. JOURNAL OF PHYSICAL CHEMISTRY B, 106(50), 12986–12992. https://doi.org/10.1021/jp026600x

Sauthier, M. L., Carroll, R. L., Gorman, C. B., & Franzen, S. (2002). Nanoparticle Layers Assembled through DNA Hybridization:  Characterization and Optimization. Langmuir, 18(5), 1825–1830. https://doi.org/10.1021/la0112763

Franzen, S., Folmer, J. C. W., Glomm, W. R., & R O'Neal. (2002). Optical properties of dye molecules adsorbed on single gold and silver nanoparticles. JOURNAL OF PHYSICAL CHEMISTRY A, 106(28), 6533–6540. https://doi.org/10.1021/jp025536g

Brewer, S. H., & Franzen, S. (2002). Optical properties of indium tin oxide and fluorine-doped tin oxide surfaces: correlation of reflectivity, skin depth, and plasmon frequency with conductivity. JOURNAL OF ALLOYS AND COMPOUNDS, 338(1-2), 73–79. https://doi.org/10.1016/S0925-8388(02)00217-7

Franzen, S. (2002). Perimeter model for the magnetic circular dichroism spectrum of deoxy ferrous heme in myoglobin. JOURNAL OF PHYSICAL CHEMISTRY B, 106(40), 10482–10491. https://doi.org/10.1021/jp025616k

Franzen, S., Peterson, E. S., Brown, D., Friedman, J. M., Thomas, M. R., & Boxer, S. G. (2002). Proximal ligand motions in H93G myoglobin. EUROPEAN JOURNAL OF BIOCHEMISTRY, 269(19), 4879–4886. https://doi.org/10.1046/j.1432-1033.2002.03193.x

Smith, B. M., & Franzen, S. (2002). Single-pass attenuated total reflection Fourier transform infrared spectroscopy for the analysis of proteins in H2O solution. ANALYTICAL CHEMISTRY, 74(16), 4076–4080. https://doi.org/10.1021/ac020103v

Smith, B. M., Oswald, L., & Franzen, S. (2002). Single-pass attenuated total reflection Fourier transform infrared spectroscopy for the prediction of protein secondary structure. ANALYTICAL CHEMISTRY, 74(14), 3386–3391. https://doi.org/10.1021/ac020104n

Franzen, S. (2002). Spin-dependent mechanism for diatomic ligand binding to heme. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 99(26), 16754–16759. https://doi.org/10.1073/pnas.252590999

Franzen, S., Bailey, J., Dyer, R. B., Woodruff, W. H., Hu, R. B., Thomas, M. R., & Boxer, S. G. (2001). A photolysis-triggered heme ligand switch in H93G myoglobin. BIOCHEMISTRY, 40(17), 5299–5305. https://doi.org/10.1021/bi0023403

Franzen, S. (2001). Effect of a charge relay on the vibrational frequencies of carbonmonoxy iron porphine adducts: The coupling of changes in axial ligand bond strength and porphine core size. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 123(50), 12578–12589. https://doi.org/10.1021/ja0108988

Franzen, S., Miskowski, V. M., Shreve, A. P., Wallace-Williams, S. E., Woodruff, W. H., Ondrias, M. R., … Boxer, S. G. (2001). Electrostatic and conformational effects on the electronic structures of distortional isomers of a mixed-valence binuclear Cu complex. INORGANIC CHEMISTRY, 40(25), 6375–6382. https://doi.org/10.1021/ic010494g

Thomas, M. R., Brown, D., Franzen, S., & Boxer, S. G. (2001). FTIR and resonance Raman studies of nitric oxide binding to H93G cavity mutants of myoglobin. BIOCHEMISTRY, 40(49), 15047–15056. https://doi.org/10.1021/bi011440l

Franzen, S., Kiger, L., Poyart, C., & Martin, J. L. (2001). Heme photolysis occurs by ultrafast excited state metal-to-ring charge transfer. BIOPHYSICAL JOURNAL, 80(5), 2372–2385. https://doi.org/10.1016/S0006-3495(01)76207-8

Novak, J. P., Nickerson, C., Franzen, S., & Feldheim, D. L. (2001). Purification of molecularly bridged metal nanoparticle arrays by centrifugation and size exclusion chromatography. ANALYTICAL CHEMISTRY, 73(23), 5758–5761. https://doi.org/10.1021/ac010812t

Pop, C., Chen, Y. R., Smith, B., Bose, K., Bobay, B., Tripathy, A., … Clark, A. C. (2001). Removal of the pro-domain does not affect the conformation of the procaspase-3 dimer. BIOCHEMISTRY, 40(47), 14224–14235. https://doi.org/10.1021/bi011037e