George Allen Wear, E. E., Song, J., Zynda, G. J., Mickelson-Young, L., LeBlanc, C., Lee, T.-J., … Thompson, W. F. (2020). Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots. PLOS GENETICS, 16(10). https://doi.org/10.1371/journal.pgen.1008623 Wear, E. E., Song, J., Zynda, G. J., LeBlanc, C., Lee, T.-J., Mickelson-Young, L., … Thompson, W. F. (2017). Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips. PLANT CELL, 29(9), 2126–2149. https://doi.org/10.1105/tpc.17.00037 Mickelson-Young, L., Wear, E., Mulvaney, P., Lee, T.-J., Szymanski, E. S., Allen, G., … Thompson, W. (2016). A flow cytometric method for estimating S-phase duration in plants. JOURNAL OF EXPERIMENTAL BOTANY, 67(21), 6077–6087. https://doi.org/10.1093/jxb/erw367 Bass, H. W., Hoffman, G. G., Lee, T.-J., Wear, E. E., Joseph, S. R., Allen, G. C., … Thompson, W. F. (2015). Defining multiple, distinct, and shared spatiotemporal patterns of DNA replication and endoreduplication from 3D image analysis of developing maize (Zea mays L.) root tip nuclei. PLANT MOLECULAR BIOLOGY, 89(4-5), 339–351. https://doi.org/10.1007/s11103-015-0364-4 Bass, H. W., Wear, E. E., Lee, T.-J., Hoffman, G. G., Gumber, H. K., Allen, G. C., … Hanley-Bowdoin, L. (2014). [Review of A maize root tip system to study DNA replication programmes in somatic and endocycling nuclei during plant development]. JOURNAL OF EXPERIMENTAL BOTANY, 65(10), 2747–2756. https://doi.org/10.1093/jxb/ert470 Barampuram, S., Allen, G., & Krasnyanski, S. (2014). Effect of various sterilization procedures on the in vitro germination of cotton seeds. PLANT CELL TISSUE AND ORGAN CULTURE, 118(1), 179–185. https://doi.org/10.1007/s11240-014-0472-x Pascuzzi, P. E., Flores-Vergara, M. A., Lee, T.-J., Sosinski, B., Vaughn, M. W., Hanley-Bowdoin, L., … Allen, G. C. (2014). In Vivo Mapping of Arabidopsis Scaffold/Matrix Attachment Regions Reveals Link to Nucleosome-Disfavoring Poly(dA:dT) Tracts. PLANT CELL, 26(1), 102–120. https://doi.org/10.1105/tpc.113.121194 Bajwa, V. S., Wang, X., Blackburn, R. K., Goshe, M. B., Mitra, S. K., Williams, E. L., … Clouse, S. D. (2013). Identification and Functional Analysis of Tomato BRI1 and BAK1 Receptor Kinase Phosphorylation Sites. PLANT PHYSIOLOGY, 163(1), 30–42. https://doi.org/10.1104/pp.113.221465 Williamson, J. D., Desai, A., Krasnyanski, S. F., Ding, F., Guo, W. W., Nguyen, T. T., … Allen, G. C. (2013). Overexpression of mannitol dehydrogenase in zonal geranium confers increased resistance to the mannitol secreting fungal pathogen Botrytis cinerea. Plant Cell, Tissue and Organ Culture, 115(3), 367–375. https://doi.org/10.1007/s11240-013-0368-1 Jia, Y., Li, S., Allen, G., Feng, S., & Xue, L. (2012). A Novel Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) Promoter for Expressing Transgenes in the Halotolerant Alga Dunaliella salina. CURRENT MICROBIOLOGY, 64(5), 506–513. https://doi.org/10.1007/s00284-012-0102-y Lee, T.-J., Pascuzzi, P. E., Settlage, S. B., Shultz, R. W., Tanurdzic, M., Rabinowicz, P. D., … Thompson, W. F. (2010). Arabidopsis thaliana Chromosome 4 Replicates in Two Phases That Correlate with Chromatin State. PLoS Genetics, 6(6), e1000982. https://doi.org/10.1371/journal.pgen.1000982 Shultz, R. W., Lee, T.-J., Allen, G. C., Thompson, W. F., & Hanley-Bowdoin, L. (2009). Dynamic Localization of the DNA Replication Proteins MCM5 and MCM7 in Plants. PLANT PHYSIOLOGY, 150(2), 658–669. https://doi.org/10.1104/pp.109.136614 Santa-Maria, M., Pecota, K. V., Yencho, C. G., Allen, G., & Sosinski, B. (2009). Rapid shoot regeneration in industrial 'high starch' sweetpotato (Ipomoea batatas L.) genotypes. PLANT CELL TISSUE AND ORGAN CULTURE, 97(1), 109–117. https://doi.org/10.1007/s11240-009-9504-3 Allen, G. C., Flores-Vergara, M. A., Krasnyanski, S., Kumar, S., & Thompson, W. F. (2006). A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. NATURE PROTOCOLS, 1(5), 2320–2325. https://doi.org/10.1038/nprot.2006.384 Kumar, S., Allen, G. C., & Thompson, W. F. (2006). [Review of Gene targeting in plants: fingers on the move]. TRENDS IN PLANT SCIENCE, 11(4), 159–161. https://doi.org/10.1016/j.tplants.2006.02.002 Helmer, G. L., Allen, G. C., & Thompson, W. F. (2006). High efficiency gene targeting in plants. Washington, DC: U.S. Patent and Trademark Office. Abranches, R., Shultz, R. W., Thompson, W. F., & Allen, G. C. (2005). Matrix attachment regions and regulated transcription increase and stabilize transgene expression. PLANT BIOTECHNOLOGY JOURNAL, 3(5), 535–543. https://doi.org/10.1111/j.1467-7652.2005.00144.x Ascenzi, R., Ulker, B., Todd, J. J., Sowinski, D. A., Schimeneck, C. R., Allen, G. C., … Thompson, W. F. (2003). Analysis of trans-silencing interactions using transcriptional silencers of varying strength and targets with and without flanking nuclear matrix attachment regions. TRANSGENIC RESEARCH, 12(3), 305–318. https://doi.org/10.1023/A:1023310118231 Mankin, S. L., Allen, G. C., Phelan, T., Spiker, S., & Thompson, W. F. (2003). Elevation of transgene expression level by flanking matrix attachment regions (MAR) is promoter dependent: a study of the interactions of six promoters with the RB7 3 ' MAR. TRANSGENIC RESEARCH, 12(1), 3–12. https://doi.org/10.1023/A:1022194120518 Love, J., Allen, G. C., Gatz, C., & Thompson, W. F. (2002). Differential Top10 promoter regulation by six tetracycline analogues in plant cells. JOURNAL OF EXPERIMENTAL BOTANY, 53(376), 1871–1877. https://doi.org/10.1093/jxb/erf050 Callaway, A. S., Abranches, R., Scroggs, J., Allen, G. C., & Thompson, W. F. (2002). High-throughput transgene copy number estimation by competitive PCR. PLANT MOLECULAR BIOLOGY REPORTER, 20(3), 265–277. https://doi.org/10.1007/BF02782462 Thompson, W., Allen, G., & Mankin, S. (2000). Increasing expression of transgenes in plant cells using insulator elements. Washington, DC: U.S. Patent and Trademark Office. Thompson, W., Allen, G., & Mankin, S. (2000). Method for reducing expression variability of transgenes in plant cells. Washington, DC: U.S. Patent and Trademark Office. Allen, G. C., Spiker, S., & Thompson, W. F. (2000). [Review of Use of matrix attachment regions (MARs) to minimize transgene silencing]. PLANT MOLECULAR BIOLOGY, 43(2-3), 361–376. https://doi.org/10.1023/A:1006424621037 Ulker, B., Allen, G. C., Thompson, W. F., Spiker, S., & Weissinger, A. K. (1999). A tobacco matrix attachment region reduces the loss of transgene expression in the progeny of transgenic tobacco plants. PLANT JOURNAL, 18(3), 253–263. https://doi.org/10.1046/j.1365-313X.1999.00453.x Michalowski, S. M., Allen, G. C., Hall, G. E., Thompson, W. F., & Spiker, S. (1999). Characterization of randomly-obtained matrix attachment regions (MARs) from higher plants. BIOCHEMISTRY, 38(39), 12795–12804. https://doi.org/10.1021/bi991142c Vain, P., Worland, B., Kohli, A., Snape, J. W., Christou, P., Allen, G. C., & Thompson, W. F. (1999). Matrix attachment regions increase transgene expression levels and stability in transgenic rice plants and their progeny. PLANT JOURNAL, 18(3), 233–242. https://doi.org/10.1046/j.1365-313X.1999.00446.x Petracek, M. E., Dickey, L. F., Nguyen, T. T., Gatz, C., Sowinski, D. A., Allen, G. C., & Thompson, W. F. (1998). Ferredoxin-1 mRNA is destabilized by changes in photosynthetic electron transport. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95(15), 9009–9013. https://doi.org/10.1073/pnas.95.15.9009 Method of increasing expression for foreign genes in plant cells. (1998). Washington, DC: U.S. Patent and Trademark Office. Plant nuclear scaffold attachment region and method for increasing gene expression in transgenic cells. (1998). Washington, DC: U.S. Patent and Trademark Office. Petracek, M. E., Dickey, L. F., Hansen, E. R., Sowinski, D. A., Nguyen, T., Allen, G. C., & Thompson, G. F. (1998). The dependence of Fed-1 light regulation on translation. In J. Bailey-Serres & D. R. Gallie (Eds.), A look beyond transcription: Mechanisms determining mRNAstability and translation in plants (pp. 96–101). Washington, DC: American Society of Plant Physiologists. Mankin, S. L., Allen, G. C., & Thompson, W. (1997). Introduction of a plant intron into the luciferase gene of Photinus pyralis. Plant Molecular Biology Reporter, 15(2), 186–196. https://doi.org/10.1007/bf02812270 Allen, G. C., Hall, G., Michalowski, S., Newman, W., Spiker, S., Weissinger, A. K., & Thompson, W. F. (1996). High-Level Transgene Expression in Plant Cells: Effects of a Strong Scaffold Attachment Region from Tobacco. The Plant Cell, 8(5), 899. https://doi.org/10.2307/3870291 Allen, G. C., Hall, G. E., Childs, L. C., Weissinger, A. K., Spiker, S. L., & Thompson, W. F. (1993). Scaffold attachment regions increase reporter gene expresssion in stably transformed plant cells. Plant Cell, 5(6), 603–613. https://doi.org/10.2307/3869803 Allen, G. C., Grimm, D. T., & Elkan, G. H. (1991). Oxygen uptake and hydrogen-stimulated nitrogenase activity from Azorhizobium caulinodans ORS571 grown in a succinate-limited chemostat. Applied and Environmental Microbiology, 57(11), 3220.