George Tiley

Phelps, L. N., Razanatsoa, E., Davis, D. S., Hackel, J., Rasolondrainy, T., Tiley, G. P., … Lehmann, C. E. R. (2025, May 1). Advancing transdisciplinary research on Madagascar's grassy biomes to support resilience in ecosystems and livelihoods. Ecological Monographs. https://doi.org/10.1002/ecm.70011

Tiley, G. P., Liu, N., & Solís-Lemus, C. (2025, January 1). Extracting diamonds: identifiability of 4-node cycles in level-1 phylogenetic networks. Evolutionary Journal of the Linnean Society. https://doi.org/10.1093/evolinnean/kzaf019

Hackel, J., Davis, D. S., Rasolondrainy, T., Razanatsoa, E., Tiley, G. P., & Phelps, L. N. (2025, June 29). Madagascar's grassy biomes, from Holocene to Anthropocene. Plants People Planet. https://doi.org/10.1002/ppp3.70062

Kong, S., Solís-Lemus, C., & Tiley, G. P. (2025, July 28). Phylogenetic networks empower biodiversity research. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.2410934122

Tiley, G. P., Crowl, A. A., Manos, P. S., Sessa, E. B., Solís-Lemus, C., Yoder, A. D., & Burleigh, J. G. (2024, May 11). Benefits and Limits of Phasing Alleles for Network Inference of Allopolyploid Complexes (S. Smith, Ed.). Systematic Biology. https://doi.org/10.1093/sysbio/syae024

Elst, T., Sgarlata, G. M., Schüßler, D., Tiley, G. P., Poelstra, J. W., Scheumann, M., … Salmona, J. (2024, September 27). Integrative taxonomy clarifies the evolution of a cryptic primate clade. Nature Ecology & Evolution. https://doi.org/10.1038/s41559-024-02547-w

Sutherland, B. L., Tiley, G. P., Li, Z., McKibben, M. T. W., & Barker, M. S. (2024, January 18). SLEDGe: Inference of ancient whole genome duplications using machine learning. https://doi.org/10.1101/2024.01.17.574559

Tiley, G. P., Flouri, T., Jiao, X., Poelstra, J. W., Xu, B., Zhu, T., … Yang, Z. (2023, March 22). Estimation of species divergence times in presence of cross-species gene flow (B. Carstens, Ed.). Systematic Biology. https://doi.org/10.1093/sysbio/syad015

Tiley, G., Liu, N., & Solís-Lemus, C. (2023, October 30). Extracting diamonds: Identifiability of 4-node cycles in level-1 phylogenetic networks under a pseudolikelihood coalescent model. BioRxiv (Cold Spring Harbor Laboratory). https://doi.org/10.1101/2023.10.25.564087

Tiley, G. P., Crowl, A. A., Almary, T. O. M., Luke, W. R. Q., Solofondranohatra, C. L., Besnard, G., … Vorontsova, M. S. (2023, September 27). Genetic variation in <i>Loudetia simplex</i> supports the presence of ancient grasslands in Madagascar. Plants People Planet. https://doi.org/10.1002/ppp3.10437

Tiley, G. P., Crowl, A. A., Almary, T. O. M., Luke, W. R. Q., Solofondranohatra, C. L., Besnard, G., … Vorontsova, M. S. (2023, April 8). Genetic variation in<i>Loudetia simplex</i>supports the presence of ancient grasslands in Madagascar. BioRxiv (Cold Spring Harbor Laboratory). https://doi.org/10.1101/2023.04.07.536094

Shao, Y., Zhou, L., Li, F., Zhao, L., Zhang, B.-L., Shao, F., … Wu, D.-D. (2023, June 1). Phylogenomic analyses provide insights into primate evolution. Science. https://doi.org/10.1126/SCIENCE.ABN6919

Almary, T. O. M., White, J., Rasaminirina, F., Razanatsoa, J., Lehmann, C., Rakotoarinivo, M., … Tiley, G. P. (2023, September 26). The grass that built the Central Highland of Madagascar: environmental niches and morphological diversity of<i>Loudetia simplex</i>. BioRxiv (Cold Spring Harbor Laboratory). https://doi.org/10.1101/2023.09.25.559324

Crowl, A. A., Fritsch, P. W., Tiley, G. P., Lynch, N. P., Ranney, T. G., Ashrafi, H., & Manos, P. S. (2022). A first complete phylogenomic hypothesis for diploid blueberries (<i>Vaccinium</i> section <i>Cyanococcus</i>). American Journal of Botany, 109(10), 1596–1606. https://doi.org/10.1002/ajb2.16065

Bergeron, L. A., Besenbacher, S., Turner, T., Versoza, C. J., Wang, R. J., Price, A. L., … Schierup, M. H. (2022, January 4). Author response: The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates. ELife. https://doi.org/10.7554/ELIFE.73577.SA2

Tiley, G. P., Elst, T., Teixeira, H., Schüßler, D., Salmona, J., Blanco, M. B., … Yoder, A. D. (2022, July 26). Population genomic structure in Goodman's mouse lemur reveals long‐standing separation of Madagascar's Central Highlands and eastern rainforests. Molecular Ecology. https://doi.org/10.1111/mec.16632

Bergeron, L. A., Besenbacher, S., Turner, T., Versoza, C. J., Wang, R. J., Price, A. L., … Schierup, M. H. (2022, January 12). The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates. ELife. https://doi.org/10.7554/elife.73577

Breinholt, J. W., Carey, S. B., Tiley, G. P., Davis, E. C., Endara, L., McDaniel, S. F., … Burleigh, J. G. (2021, January 1). A target enrichment probe set for resolving the flagellate land plant tree of life. Applications in Plant Sciences. https://doi.org/10.1002/aps3.11406

Tiley, G. P., Crowl, A. A., Manos, P. S., Sessa, E. B., Solís-Lemus, C., Yoder, A. D., & Burleigh, J. G. (2021, May 4). Benefits and Limits of Phasing Alleles for Network Inference of Allopolyploid Complexes. BioRxiv (Cold Spring Harbor Laboratory). https://doi.org/10.1101/2021.05.04.442457

Carey, S. B., Jenkins, J., Lovell, J. T., Maumus, F., Sreedasyam, A., Payton, A. C., … McDaniel, S. F. (2021, June 30). Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. Science Advances, Vol. 7. https://doi.org/10.1126/sciadv.abh2488

Campbell, C. R., Tiley, G. P., Poelstra, J. W., Hunnicutt, K. E., Larsen, P. A., Lee, H.-J., … Yoder, A. D. (2021, July 16). Pedigree-based and phylogenetic methods support surprising patterns of mutation rate and spectrum in the gray mouse lemur. Heredity. https://doi.org/10.1038/s41437-021-00446-5

Tiley, G., Elst, T., Teixeira, H., Schüßler, D., Salmona, J., Blanco, M., … Yoder, A. (2021, December 15). Population genomic structure in Goodman's mouse lemur reveals long-standing separation of Madagascar's Central Highlands and eastern rainforests. https://doi.org/10.22541/au.163958777.74253126/v1

Yoder, A. D., & Tiley, G. P. (2021, June 1). The challenge and promise of estimating the de novo mutation rate from whole‐genome comparisons among closely related individuals. Molecular Ecology. https://doi.org/10.1111/mec.16007

Poelstra, J. W., Salmona, J., Tiley, G. P., Schüßler, D., Blanco, M. B., Andriambeloson, J. B., … Yoder, A. D. (2020, June 30). Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent (J. Esselstyn, Ed.). Systematic Biology, Vol. 7. https://doi.org/10.1093/sysbio/syaa053

Tiley, G. P., Poelstra, J. W., Reis, M., Yang, Z., & Yoder, A. D. (2020, July 22). Molecular Clocks without Rocks: New Solutions for Old Problems. Trends in Genetics, Vol. 36, pp. 845–856. https://doi.org/10.1016/j.tig.2020.06.002

Tiley, G. P., Blanco, M. B., Ralison, J. M., Rasoloarison, R. M., Stahlke, A. R., Hohenlohe, P. A., … Yoder, A. D. (2020, January 30). Population genomic structure in Goodman’s mouse lemur reveals long-standing separation of Madagascar’s Central Highlands and eastern rainforests. BioRxiv (Cold Spring Harbor Laboratory), Vol. 1. https://doi.org/10.1101/2020.01.30.923300

Carey, S. B., Jenkins, J., Lovell, J. T., Maumus, F., Sreedasyam, A., Payton, A. C., … McDaniel, S. F. (2020, July 4). The Ceratodon purpureus genome uncovers structurally complex, gene rich sex chromosomes. BioRxiv. https://doi.org/10.1101/2020.07.03.163634

Tiley, G. P., Pandey, A., Kimball, R. T., Braun, E. L., & Burleigh, J. G. (2020, March 17). Whole genome phylogeny of Gallus: introgression and data-type effects. Avian Research, Vol. 11. https://doi.org/10.1186/s40657-020-00194-w

Hunnicutt, K. E., Tiley, G. P., Williams, R. C., Larsen, P. A., Blanco, M. B., Rasoloarison, R. M., … Yoder, A. D. (2019, September 14). Comparative Genomic Analysis of the Pheromone Receptor Class 1 Family (V1R) Reveals Extreme Complexity in Mouse Lemurs (Genus, Microcebus) and a Chromosomal Hotspot across Mammals. Genome Biology and Evolution. https://doi.org/10.1093/gbe/evz200

Schußler, D., Salmona, J., Blanco, M. B., Poelstra, J., Tiley, G. P., Andriambeloson, J. B., … Radespiel, U. (2019, August 21). Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent. BioRxiv (Cold Spring Harbor Laboratory). https://doi.org/10.1101/742361

Hunnicutt, K. E., Tiley, G. P., Williams, R. C., Larsen, P. A., Blanco, M. B., Rasoloarison, R. M., … Yoder, A. D. (2019, May 15). Elaborate expansion of syntenic V1R hotspots correlates with high species diversity in nocturnal mouse and dwarf lemurs. BioRxiv. https://doi.org/10.1101/637348

Leebens-Mack, J. H., Barker, M. S., Carpenter, E. J., Deyholos, M. K., Gitzendanner, M. A., Graham, S. W., … Wong, G. K.-S. (2019, October 23). One thousand plant transcriptomes and the phylogenomics of green plants. Nature, Vol. 574, pp. 679-+. https://doi.org/10.1038/s41586-019-1693-2

Campbell, C. R., Tiley, G. P., Poelstra, J. W., Hunnicutt, K. E., Larsen, P. A., Lee, H.-J., … Yoder, A. D. (2019, August 5). Pedigree-based measurement of the <i>de novo</i> mutation rate in the gray mouse lemur reveals a high mutation rate, few mutations in CpG sites, and a weak sex bias. BioRxiv. https://doi.org/10.1101/724880

Li, Z., Tiley, G. P., Rundell, R. J., & Barker, M. S. (2019, January 23). Reply to Nakatani and McLysaght: Analyzing deep duplication events. Proceedings of the National Academy of Sciences, Vol. 116, pp. 1819–1820. https://doi.org/10.1073/pnas.1819227116

Tiley, G. P., Barker, M. S., & Burleigh, J. G. (2018, September 17). Assessing the performance of Ks plots for detecting ancient whole genome duplications. Genome Biology and Evolution, Vol. 9. https://doi.org/10.1093/gbe/evy200

Tiley, G. P., Kimball, R. T., Braun, E. L., & Burleigh, J. G. (2018, May 8). Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution. BMC Genomics, Vol. 19. https://doi.org/10.1186/s12864-018-4711-0

Li, Z., Tiley, G. P., Galuska, S. R., Reardon, C. R., Kidder, T. I., Rundell, R. J., & Barker, M. S. (2018, April 19). Multiple large-scale gene and genome duplications during the evolution of hexapods. Proceedings of the National Academy of Sciences, Vol. 115, pp. 4713–4718. https://doi.org/10.1073/pnas.1710791115

Yoder, A. D., Poelstra, J. W., Tiley, G. P., Williams, R. C., & Kumar, S. (2018, April 14). Neutral Theory Is the Foundation of Conservation Genetics. Molecular Biology and Evolution, Vol. 35, pp. 1322–1326. https://doi.org/10.1093/molbev/msy076

Tiley, G. P., Ané, C., & Burleigh, J. G. (2016, March 17). Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data. Genome Biology and Evolution, Vol. 8, pp. 1023–1037. https://doi.org/10.1093/gbe/evw058

Tiley, G. P., & Burleigh, J. G. (2015, November 9). Erratum to: The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms. BMC Evolutionary Biology, Vol. 15. https://doi.org/10.1186/s12862-015-0525-8

Tiley, G. P., & Burleigh, J. G. (2015, September 16). The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms. BMC Evolutionary Biology, Vol. 15. https://doi.org/10.1186/s12862-015-0473-3

Evolutionary Relationships among <i>Ipomoea batatas</i> and Closely Related Species. (2013). Hortscience. Retrieved from https://publons.com/wos-op/publon/68496722/

Eserman, L. A., Tiley, G. P., Jarret, R. L., Leebens‐Mack, J. H., & Miller, R. E. (2013, December 27). Phylogenetics and diversification of morning glories (tribe Ipomoeeae, Convolvulaceae) based on whole plastome sequences. American Journal of Botany, Vol. 101, pp. 92–103. https://doi.org/10.3732/ajb.1300207