Ho Shin Kim

Works (13)

Updated: July 5th, 2023 15:42

2021 journal article

Assessment of AMBER Force Fields for Simulations of ssDNA

JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 17(2), 1208–1217.

By: T. Oweida n, H. Kim n, J. Donald n, A. Singh n & Y. Yingling n 

MeSH headings : DNA, Single-Stranded / chemistry; Fluorescence Resonance Energy Transfer; Models, Chemical; Nuclear Magnetic Resonance, Biomolecular / methods; Nucleic Acid Conformation; Scattering, Small Angle; X-Ray Diffraction
TL;DR: Assessment of existing Amber force fields for all-atom simulations of ssDNA in implicit and explicit solvents finds that some force fields agree better with experiments than others mainly due to the difference in parameterization of the propensity for hydrogen bonding and base stacking. (via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy (OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: January 15, 2021

2020 journal article

Structure, self-assembly, and properties of a truncated reflectin variant

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(52), 32891–32901.

By: M. Umerani *, P. Pratakshya*, A. Chatterjee *, J. Sanchez*, H. Kim n, G. Ilc*, M. Kovacic *, C. Magnan* ...

author keywords: reflectin; self-assembly; proteins; biomaterials; optical properties
TL;DR: The molecular-level structure of a model reflectin variant is resolved at the molecular level, a straightforward approach to controlling the assembly of this protein is established, and a correlation between its structural characteristics and light-manipulating properties is established. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
14. Life Below Water (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: January 25, 2021

2018 journal article

Wrapping Nanocellulose Nets around Graphene Oxide Sheets

Angewandte Chemie International Edition, 57(28), 8508–8513.

By: R. Xiong *, H. Kim n, L. Zhang *, V. Korolovych*, S. Zhang*, Y. Yingling n , V. Tsukruk *

Contributors: R. Xiong *, H. Kim n, L. Zhang *, V. Korolovych*, S. Zhang*, Y. Yingling n , V. Tsukruk *

author keywords: cellulose nanofibers; graphene; mechanical properties; self-assembly; water transport
TL;DR: An efficient and universal amphiphilicity-driven assembly strategy to construct "hairy" flexible hybrid nanosheets with a 1D cellulose nanofibers net conformally wrapped around 2D graphene oxide (GO) monolayers, allowing fast water transport combined with high filtration efficiency. (via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation (OpenAlex)
Sources: Web Of Science, Crossref, ORCID, NC State University Libraries
Added: August 6, 2018

2017 review

Advances in Molecular Modeling of Nanoparticle Nucleic Acid Interfaces

[Review of ]. BIOCONJUGATE CHEMISTRY, 28(1), 3–10.

By: J. Nash n, A. Kwansa n, J. Peerless n, H. Kim n & Y. Yingling n 

Contributors: J. Nash n, A. Kwansa n, J. Peerless n, H. Kim n & Y. Yingling n 

MeSH headings : Ligands; Models, Molecular; Nanoparticles / chemistry; Nucleic Acids / chemistry; Solvents / chemistry
TL;DR: This Topical Review briefly review computational methods relevant to the interactions of inorganic NPs and nucleic acids and highlight recent insights obtained from various computational methods that were applied to studies of in organic nanoparticle-nanoparticle and nanoparticles-nucleic acid interfaces. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2017 journal article

Effect of graphene oxidation rate on adsorption of poly-thymine single stranded DNA

Advanced Materials Interfaces, 4(8).

By: H. Kim, B. Farmer & Y. Yingling 

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Interfacial Mechanical Properties of Graphene on Self-Assembled Monolayers: Experiments and Simulations

ACS Applied Materials & Interfaces, 9(11), 10203–10213.

By: Q. Tu *, H. Kim n, T. Oweida n, Z. Parlak*, Y. Yingling n  & S. Zauscher *

Contributors: Q. Tu *, H. Kim n, T. Oweida n, Z. Parlak*, Y. Yingling n  & S. Zauscher *

author keywords: graphene; self-assembled monolayer; contact resonance AFM; out-of-plane Young's modulus; molecular dynamics simulation; interfacial water
TL;DR: It is shown that the head group chemistry of a SAM, which affects the interfacial interactions, can have a significant effect on the out-of-plane elastic modulus of the graphene-SAM heterostructure. (via Semantic Scholar)
Sources: Web Of Science, Crossref, ORCID, NC State University Libraries
Added: August 6, 2018

2017 journal article

Interfacial stability of graphene-based surfaces in water and organic solvents

Journal of Materials Science, 53(8), 5766–5776.

By: H. Kim n, T. Oweida n & Y. Yingling n 

Contributors: Y. Yingling n , T. Oweida n & H. Kim n

Sources: Web Of Science, Crossref, ORCID, NC State University Libraries
Added: August 6, 2018

2017 journal article

Template-Guided Assembly of Silk Fibroin on Cellulose Nanofibers for Robust Nanostructures with Ultrafast Water Transport

ACS Nano, 11(12), 12008–12019.

By: R. Xiong *, H. Kim n, S. Zhang*, S. Kim*, V. Korolovych*, R. Ma*, Y. Yingling n , C. Lu *, V. Tsukruk *

Contributors: R. Xiong *, H. Kim n, S. Zhang*, S. Kim*, V. Korolovych*, R. Ma*, Y. Yingling n , C. Lu *, V. Tsukruk *

author keywords: silk fibroin; cellulose nanofiber; ultrathin membrane; flexible nanocomposites; ultrafast permeation
TL;DR: A spontaneous formation of peculiar "shish kebab" nanostructures with the periodic arrangement of silk fibroin domains along straight segments of cellulose nanofibers is reported, enabling the ultrathin membrane to possess open, transparent, mechanically robust interlocked networks with high mechanical performance. (via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation (OpenAlex)
Sources: Web Of Science, Crossref, ORCID, NC State University Libraries
Added: August 6, 2018

2016 journal article

Fluorescence Blinking as an Output Signal for Biosensing

ACS Sensors, 1(11), 1295–1300.

By: B. Roark*, J. Tan*, A. Ivanina *, M. Chandler *, J. Castaneda*, H. Kim n, S. Jawahar*, M. Viard * ...

Contributors: K. Afonin *, M. Jones*, Y. Yingling n , K. Wustholz *, S. Talic*, M. Viard *, S. Jawahar*, H. Kim n ...

author keywords: fluorescence blinking; quantum dots; lattices; biosensors; K-ras; nucleic acid engineering; strand displacement
TL;DR: This work demonstrates the first biosensing strategy that relies on quantum dot (QD) fluorescence blinking to report the presence of a target molecule, and does not require the analyte to induce any fluorescence intensity or color changes, making it readily applicable to a wide range of target species. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, Crossref, ORCID, NC State University Libraries
Added: August 6, 2018

2016 journal article

Sequence dependent interaction of single stranded DNA with graphitic flakes: atomistic molecular dynamics simulations

MRS Advances, 1(25), 1883–1889.

By: H. Kim n, S. Huang n & Y. Yingling n 

Contributors: Y. Yingling n , S. Huang n & H. Kim n

UN Sustainable Development Goal Categories
Sources: Web Of Science, Crossref, ORCID, NC State University Libraries
Added: August 6, 2018

2016 journal article

Silk Fibroin-Substrate Interactions at Heterogeneous Nanocomposite Interfaces

ADVANCED FUNCTIONAL MATERIALS, 26(35), 6380–6392.

By: A. Grant*, H. Kim n, T. Dupnock n, K. Hu*, Y. Yingling n  & V. Tsukruk *

Contributors: A. Grant*, H. Kim n, T. Dupnock n, K. Hu*, Y. Yingling n  & V. Tsukruk *

UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2016 journal article

The effect of imidazolium cations on the structure and activity of the Candida antarctica Lipase B enzyme in ionic liquids

Physical Chemistry Chemical Physics, 18(32), 22062–22069.

By: H. Kim n, D. Eom*, Y. Koo * & Y. Yingling n 

Contributors: Y. Yingling n , Y. Koo *, D. Eom* & H. Kim n

MeSH headings : Candida / enzymology; Catalysis; Cations; Fungal Proteins / metabolism; Hydrophobic and Hydrophilic Interactions; Lipase / metabolism; Molecular Dynamics Simulation
TL;DR: Overall, this study indicates that a high ion coordination number or the presence of a long hydrophobic tail can facilitate ion-protein interactions that cause structural distortions and a decrease in CALB enzyme activity in ILs. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Sources: Web Of Science, Crossref, ORCID, NC State University Libraries
Added: August 6, 2018

2014 journal article

Progress in molecular modelling of DNA materials

MOLECULAR SIMULATION, 40(10-11), 777–783.

By: N. Li n, H. Kim n, J. Nash n, M. Lim n & Y. Yingling n 

Contributors: Y. Yingling n , M. Lim n, J. Nash n, H. Kim n & N. Li n

author keywords: molecular modelling; DNA materials; computer simulations
TL;DR: The recent advances in atomistic and coarse-grained force fields along with simulations of DNA-based materials, as applied to DNA–nanoparticle assemblies for controlled material morphology, DNA–surface interactions for biosensor development and DNA origami are reviewed. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

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