James W. Brown

Works (24)

Updated: July 5th, 2023 16:04
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2012 journal article

Modeling the Thermoproteaceae RNase P RNA

RNA BIOLOGY, 9(9), 1155–1160.

By: P. Chan, J. Brown* & T. Lowe

author keywords: RNase P; Archaea; tRNA processing; RNA catalysis; RNA secondary structure
MeSH headings : Archaeal Proteins / chemistry; Archaeal Proteins / genetics; Archaeal Proteins / metabolism; Models, Molecular; RNA Processing, Post-Transcriptional / physiology; RNA, Archaeal / chemistry; RNA, Archaeal / genetics; RNA, Archaeal / metabolism; RNA, Transfer / genetics; RNA, Transfer / metabolism; Ribonuclease P / chemistry; Ribonuclease P / genetics; Ribonuclease P / metabolism; Thermoproteaceae / chemistry; Thermoproteaceae / genetics; Thermoproteaceae / metabolism
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Discovery of a minimal form of RNase P in Pyrobaculum

Proceedings of the National Academy of Sciences, 107(52), 22493–22498.

By: L. Lai *, P. Chan *, A. Cozen*, D. Bernick*, J. Brown n, V. Gopalan *, T. Lowe *

co-author countries: United States of America 🇺🇸
author keywords: catalytic RNA; gene finding; RNA processing
MeSH headings : Archaeal Proteins / genetics; Archaeal Proteins / isolation & purification; Archaeal Proteins / metabolism; Base Sequence; Biocatalysis; Computational Biology / methods; Electrophoresis, Polyacrylamide Gel; Genome, Archaeal / genetics; Molecular Sequence Data; Nucleic Acid Conformation; Pyrobaculum / classification; Pyrobaculum / enzymology; Pyrobaculum / genetics; RNA Precursors / chemistry; RNA Precursors / genetics; RNA Precursors / metabolism; RNA, Archaeal / genetics; RNA, Archaeal / metabolism; RNA, Catalytic / genetics; RNA, Catalytic / metabolism; RNA, Transfer / chemistry; RNA, Transfer / genetics; RNA, Transfer / metabolism; Ribonuclease P / genetics; Ribonuclease P / isolation & purification; Ribonuclease P / metabolism; Sequence Homology, Nucleic Acid; Species Specificity; Substrate Specificity
Sources: Web Of Science, Crossref
Added: August 6, 2018

2010 journal article

The small nucleolar ribonucleoprotein (snoRNP) database

RNA, 16(4), 664–666.

By: J. Ellis*, D. Brown & J. Brown*

co-author countries: United States of America 🇺🇸
author keywords: sRNA; sRNP; small nucleolar RNA; small nucleolar RNP
MeSH headings : Databases, Genetic; Internet; Metagenomics; RNA, Small Nucleolar / chemistry; Ribonucleoproteins, Small Nucleolar / chemistry; Ribonucleoproteins, Small Nucleolar / genetics; Ribonucleoproteins, Small Nucleolar / metabolism
Source: Web Of Science
Added: August 6, 2018

2009 journal article

The RNA structure alignment ontology

RNA, 15(9), 1623–1631.

By: J. Brown*, A. Birmingham, P. Griffiths, F. Jossinet, R. Kachouri-Lafond, R. Knight, B. Lang, N. Leontis ...

author keywords: databases; ontology; sequences; structural bioinformatics
MeSH headings : Animals; Base Sequence; Humans; Models, Biological; Molecular Sequence Data; Nucleic Acid Conformation; Phylogeny; RNA / analysis; RNA / chemistry; Sequence Alignment / methods; Sequence Alignment / trends; Sequence Analysis, RNA / methods; Sequence Homology, Nucleic Acid; Software
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Characterization of diazotrophs containing Mo-independent nitrogenases, isolated from diverse natural environments

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 74(11), 3471–3480.

By: D. Betancourt, T. Loveless n, J. Brown* & P. Bishop n

co-author countries: United States of America 🇺🇸
MeSH headings : Aerobiosis; Anaerobiosis; Bacteria / classification; Bacteria / enzymology; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Proteins / genetics; Blotting, Southern; Coenzymes / pharmacology; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; DNA, Ribosomal / chemistry; DNA, Ribosomal / genetics; Environmental Microbiology; Gram-Positive Bacteria / classification; Gram-Positive Bacteria / enzymology; Gram-Positive Bacteria / genetics; Gram-Positive Bacteria / isolation & purification; Molecular Sequence Data; Molybdenum / pharmacology; Nitrogenase / genetics; Nitrogenase / metabolism; Phylogeny; Polymerase Chain Reaction; Proteobacteria / classification; Proteobacteria / enzymology; Proteobacteria / genetics; Proteobacteria / isolation & purification; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA; Sequence Homology
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Is Alba an RNase P subunit?

RNA BIOLOGY, 4(3), 169–172.

By: J. Ellis*, J. Barnes & J. Brown n

co-author countries: United States of America 🇺🇸
author keywords: ribonuclease P; archaea; rihozyme; Methanothermobacter thermoautotrophicus; Mth1483; Rpp25
MeSH headings : Archaeal Proteins / chemistry; Archaeal Proteins / isolation & purification; Archaeal Proteins / physiology; DNA-Binding Proteins / chemistry; DNA-Binding Proteins / isolation & purification; DNA-Binding Proteins / physiology; Endoribonucleases; Humans; Methanobacteriaceae / enzymology; Protein Subunits / chemistry; Protein Subunits / physiology; RNA, Catalytic; Ribonuclease P / chemistry; Ribonuclease P / isolation & purification; Ribonuclease P / physiology
Source: Web Of Science
Added: August 6, 2018

2006 journal article

The RNA Ontology Consortium: An open invitation to the RNA community

RNA, 12(4), 533–541.

By: N. Leontis, R. Altman, H. Berman, S. Brenner, J. Brown*, D. Engelke, S. Harvey, . Holbrook ...

author keywords: biological ontology; RNA; sequence alignments; 3D structure; RNA motifs
MeSH headings : Databases, Genetic; Information Dissemination; Internet; RNA; Sequence Alignment; Societies
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Bartonella quintana in Cynomolgus Monkey (Macaca fascicularis)

Emerging Infectious Diseases, 11(12), 1931–1934.

By: L. O'Rourke*, C. Pitulle*, B. Hegarty*, S. Kraycirik, K. Killary, P. Grosenstein, J. Brown*, E. Breitschwerdt* 

co-author countries: Ireland 🇮🇪
MeSH headings : Animals; Bartonella quintana / classification; Bartonella quintana / genetics; Bartonella quintana / isolation & purification; Female; Macaca fascicularis / blood; Macaca fascicularis / microbiology; Phylogeny; Trench Fever / blood; Trench Fever / microbiology; Trench Fever / veterinary
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2005 journal article

Structural implications of novel diversity in eucaryal RNase P RNA

RNA, 11(5), 739–751.

By: S. Marquez, J. Harris, S. Kelley, J. Brown, S. Dawson, E. Roberts, N. Pace

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Evolutionary origins of the RNA-guided nucleotide-modification complexes: from the primitive translation apparatus?

Trends in Biochemical Sciences, 29(7), 343–350.

By: E. Tran n, J. Brown n & E. Maxwell n

co-author countries: United States of America 🇺🇸
MeSH headings : Amino Acid Sequence; Conserved Sequence; DNA Methylation; Evolution, Molecular; Molecular Sequence Data; Nucleic Acid Conformation; Protein Biosynthesis; Protein Conformation; RNA / genetics; RNA / physiology; Ribonucleoproteins / chemistry; Ribonucleoproteins / genetics; Ribonucleotides / metabolism; Ribosomes / chemistry; Ribosomes / genetics
Sources: Web Of Science, Crossref
Added: August 6, 2018

2003 journal article

Genes within genes within bacteria

TRENDS IN BIOCHEMICAL SCIENCES, 28(10), 521–523.

By: J. Ellis* & J. Brown*

MeSH headings : Bacteria / metabolism; Base Sequence; Escherichia coli / genetics; Gene Expression Regulation, Bacterial; Genome, Bacterial; Models, Genetic; Molecular Sequence Data; Ribonuclease P / genetics; Ribosomal Proteins / genetics; Thermus thermophilus / genetics
Source: Web Of Science
Added: August 6, 2018

2002 journal article

Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins

RNA, 8(3), 296–306.

By: T. Hall n & J. Brown n

co-author countries: United States of America 🇺🇸
author keywords: archaebacteria; Methanobacterium thermoautotrophicum strain Delta H; Methanothermobacter thermoautotrophicus; ribonuclease P
MeSH headings : Amino Acid Sequence; Animals; Antibody Formation; Blotting, Western; Cell Nucleus / enzymology; Centrifugation, Density Gradient; Cesium / chemistry; Chlorides / chemistry; Chromatography, Affinity; Endoribonucleases / genetics; Endoribonucleases / isolation & purification; Endoribonucleases / metabolism; Eukaryotic Cells / enzymology; Humans; Methanobacterium / enzymology; Molecular Sequence Data; Precipitin Tests; Protein Subunits; RNA, Archaeal / chemistry; RNA, Archaeal / genetics; RNA, Archaeal / metabolism; RNA, Bacterial / metabolism; RNA, Catalytic / genetics; RNA, Catalytic / isolation & purification; RNA, Catalytic / metabolism; RNA, Fungal / genetics; RNA, Fungal / metabolism; Rabbits; Recombinant Proteins / immunology; Recombinant Proteins / isolation & purification; Recombinant Proteins / metabolism; Ribonuclease P; Saccharomyces cerevisiae / enzymology; Sequence Homology, Amino Acid
Source: Web Of Science
Added: August 6, 2018

2002 journal article

Investigation of the phylogenetic relationships within the genus Bartonella based on comparative sequence analysis of the rnpB gene, 16S rDNA and 23S rDNA

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 52(2002 Nov), 2075–2080.

By: C. Pitulle*, C. Strehse, J. Brown & E. Breitschwerdt 

author keywords: 16S rDNA; 23S rDNA; RNase P RNA; phylogeny; genus Bartonella
Sources: Web Of Science, ORCID
Added: August 6, 2018

2002 journal article

RNAML: A standard syntax for exchanging RNA information

RNA, 8(6), 707–717.

By: A. Waugh*, P. Gendron *, R. Altman*, J. Brown n, D. Case *, D. Gautheret *, S. Harvey*, N. Leontis* ...

co-author countries: Canada 🇨🇦 France 🇫🇷 United States of America 🇺🇸
author keywords: data storage; file format; knowledge representation; XML
MeSH headings : Databases, Nucleic Acid; Nucleic Acid Conformation; Programming Languages; RNA / chemistry
Source: Web Of Science
Added: August 6, 2018

2001 journal article

Characterization of RNAse P holoenzymes from methanococcusjannaschii and methanothermobacter thermoautotrophicus

Biological Chemistry Hoppe-Seyler, 382(8), 1171–1177.

By: A. Andrews, T. Hall & J. Brown

Source: NC State University Libraries
Added: August 6, 2018

2001 journal article

New insight into RNase P RNA structure from comparative analysis of the archaeal RNA

RNA, 7(2), 220–232.

By: J. Harris n, E. Haas n, D. Williams n, D. Frank * & J. Brown n

co-author countries: United States of America 🇺🇸
author keywords: Archaea; archaebacteria; ribonuclease P; ribozyme; rnpB
MeSH headings : Base Sequence; Cells, Cultured; DNA Primers / chemistry; Endoribonucleases / chemistry; Escherichia coli / enzymology; Escherichia coli / genetics; Escherichia coli Proteins; Genes, Bacterial / genetics; Molecular Sequence Data; Nucleic Acid Conformation; Phylogeny; Plasmids; Polymerase Chain Reaction; RNA, Archaeal / classification; RNA, Archaeal / genetics; RNA, Bacterial / chemistry; RNA, Bacterial / isolation & purification; RNA, Catalytic / chemistry; RNA, Catalytic / isolation & purification; Ribonuclease P; Sequence Alignment; Sequence Analysis, DNA
Source: Web Of Science
Added: August 6, 2018

2001 chapter

The ribonuclease P family

In Ribonucleases: Pt. A (Vol. 341, pp. 56–77). San Diego, CA: Academic Press.

By: T. Hall & J. Brown

Source: NC State University Libraries
Added: August 6, 2018

1999 journal article

RNase P RNAs from some Archaea are catalytically active

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 96(14), 7803–7808.

By: J. Pannucci n, E. Haas n, T. Hall n, J. Harris n & J. Brown n

co-author countries: United States of America 🇺🇸
MeSH headings : Archaea / enzymology; Archaea / genetics; Bacillus / enzymology; Bacillus / genetics; Base Sequence; Conserved Sequence; Endoribonucleases / chemistry; Endoribonucleases / genetics; Endoribonucleases / metabolism; Kinetics; Methanobacterium / enzymology; Methanobacterium / genetics; Models, Molecular; Molecular Sequence Data; Nucleic Acid Conformation; Phylogeny; RNA, Archaeal / chemistry; RNA, Archaeal / genetics; RNA, Archaeal / metabolism; RNA, Bacterial / metabolism; RNA, Catalytic / chemistry; RNA, Catalytic / genetics; RNA, Catalytic / metabolism; Ribonuclease P
Source: Web Of Science
Added: August 6, 2018

1999 journal article

The Ribonuclease P Database

NUCLEIC ACIDS RESEARCH, 27(1), 314–314.

By: J. Brown n

co-author countries: United States of America 🇺🇸
MeSH headings : Databases, Factual; Endoribonucleases / chemistry; Endoribonucleases / genetics; Endoribonucleases / metabolism; Eukaryotic Cells / chemistry; Eukaryotic Cells / metabolism; Information Storage and Retrieval; Internet; Models, Molecular; Nucleic Acid Conformation; Organelles / chemistry; Organelles / genetics; Organelles / metabolism; Phylogeny; Protein Structure, Secondary; RNA, Archaeal / chemistry; RNA, Archaeal / genetics; RNA, Archaeal / metabolism; RNA, Bacterial / chemistry; RNA, Bacterial / genetics; RNA, Bacterial / metabolism; RNA, Catalytic / chemistry; RNA, Catalytic / genetics; RNA, Catalytic / metabolism; Ribonuclease P; Ribonucleoproteins / chemistry; Ribonucleoproteins / genetics; Ribonucleoproteins / metabolism; Sequence Alignment; Software
Source: Web Of Science
Added: August 6, 2018

1998 journal article

Evolutionary variation in bacterial RNase P RNAs

NUCLEIC ACIDS RESEARCH, 26(18), 4093–4099.

By: E. Haas n & J. Brown

co-author countries: United States of America 🇺🇸
MeSH headings : Bacteria / enzymology; Bacteria / genetics; Base Sequence; Conserved Sequence; Endoribonucleases / chemistry; Endoribonucleases / genetics; Evolution, Molecular; Genetic Variation; Models, Molecular; Molecular Sequence Data; Nucleic Acid Conformation; Phylogeny; RNA, Bacterial / chemistry; RNA, Bacterial / genetics; RNA, Catalytic / chemistry; RNA, Catalytic / genetics; Ribonuclease P
Source: Web Of Science
Added: August 6, 2018

1998 journal article

Stem-loop structure in the 5 ' region of potato virus X genome required for plus-strand RNA accumulation

JOURNAL OF MOLECULAR BIOLOGY, 284(3), 591–608.

By: E. Miller  n, C. Plante n, K. Kim n, J. Brown n & C. Hemenway n

co-author countries: United States of America 🇺🇸
author keywords: RNA structure; RNA virus; RNA replication; potato virus X; stem-loop
MeSH headings : Base Sequence; Genome, Viral; Molecular Sequence Data; Mutagenesis, Site-Directed; Nucleic Acid Conformation; Plants, Toxic; Potexvirus / genetics; Protoplasts / virology; RNA, Viral / chemistry; RNA, Viral / metabolism; Thermodynamics; Tobacco / metabolism; Tobacco / virology
Source: Web Of Science
Added: August 6, 2018

1998 journal article

The Ribonuclease P Database

NUCLEIC ACIDS RESEARCH, 26(1), 351–352.

By: J. Brown n

co-author countries: United States of America 🇺🇸
MeSH headings : Computer Communication Networks; Databases, Factual; Endoribonucleases / chemistry; Endoribonucleases / genetics; Endoribonucleases / metabolism; Information Storage and Retrieval; RNA, Catalytic / chemistry; RNA, Catalytic / genetics; RNA, Catalytic / metabolism; Ribonuclease P
Source: Web Of Science
Added: August 6, 2018

1997 journal article

Intracellular localization and unique conserved sequences of three small nucleolar RNAs

NUCLEIC ACIDS RESEARCH, 25(8), 1591–1596.

By: N. Selvamurugan *, O. Joost*, E. Haas n, J. Brown n, N. Galvin* & G. Eliceiri*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Base Sequence; Cell Nucleolus / metabolism; Chickens; Conserved Sequence; DNA Primers; Female; Humans; Mice; Molecular Sequence Data; Nucleic Acid Conformation; Oocytes / physiology; Polymerase Chain Reaction; RNA Precursors / metabolism; RNA, Small Nuclear / biosynthesis; RNA, Small Nuclear / chemistry; Rats; Sequence Homology, Nucleic Acid; Xenopus laevis; Zebrafish
Source: Web Of Science
Added: August 6, 2018

1997 journal article

The ribonuclease P database

NUCLEIC ACIDS RESEARCH, 25(1), 263–264.

By: J. Brown n

co-author countries: United States of America 🇺🇸
MeSH headings : Databases, Factual; Endoribonucleases / chemistry; Endoribonucleases / genetics; Protein Structure, Secondary; RNA, Catalytic / chemistry; RNA, Catalytic / genetics; Ribonuclease P; Sequence Alignment
Source: Web Of Science
Added: August 6, 2018