@article{peiffer_romay_gore_flint-garcia_zhang_millard_gardner_mcmullen_holland_bradbury_et al._2014, title={Causes and Consequences of Genetic Background Effects Illuminated by Integrative Genomic Analysis}, volume={196}, ISSN={["1943-2631"]}, DOI={10.1534/genetics.113.159426}, abstractNote={Abstract}, number={4}, journal={GENETICS}, author={Peiffer, J. A. and Romay, M. C. and Gore, M. A. and Flint-Garcia, S. A. and Zhang, Z. W. and Millard, M. J. and Gardner, C. A. C. and McMullen, M. D. and Holland, James and Bradbury, P. J. and et al.}, year={2014}, month={Apr}, pages={1321-+} }
 @article{huang_massouras_inoue_peiffer_ramia_tarone_turlapati_zichner_zhu_lyman_et al._2014, title={Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines}, volume={24}, number={7}, journal={Genome Research}, author={Huang, W. and Massouras, A. and Inoue, Y. and Peiffer, J. and Ramia, M. and Tarone, A. M. and Turlapati, L. and Zichner, T. and Zhu, D. H. and Lyman, R. F. and et al.}, year={2014}, pages={1193–1208} }
 @article{peiffer_romay_gore_flint-garcia_zhang_millard_gardner_mcmullen_holland_bradbury_et al._2014, title={The Genetic Architecture Of Maize Height}, volume={196}, ISSN={["1943-2631"]}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-84901312138&partnerID=MN8TOARS}, DOI={10.1534/genetics.113.159152}, abstractNote={Abstract}, number={4}, journal={GENETICS}, author={Peiffer, Jason A. and Romay, Maria C. and Gore, Michael A. and Flint-Garcia, Sherry A. and Zhang, Zhiwu and Millard, Mark J. and Gardner, Candice A. C. and McMullen, Michael D. and Holland, James B. and Bradbury, Peter J. and et al.}, year={2014}, month={Apr}, pages={1337-+} }
 @article{romay_millard_glaubitz_peiffer_swarts_casstevens_elshire_acharya_mitchell_flint-garcia_et al._2013, title={Comprehensive genotyping of the USA national maize inbred seed bank}, volume={14}, ISSN={["1474-760X"]}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-84878685948&partnerID=MN8TOARS}, DOI={10.1186/gb-2013-14-6-r55}, abstractNote={Genotyping by sequencing, a new low-cost, high-throughput sequencing technology was used to genotype 2,815 maize inbred accessions, preserved mostly at the National Plant Germplasm System in the USA. The collection includes inbred lines from breeding programs all over the world.The method produced 681,257 single-nucleotide polymorphism (SNP) markers distributed across the entire genome, with the ability to detect rare alleles at high confidence levels. More than half of the SNPs in the collection are rare. Although most rare alleles have been incorporated into public temperate breeding programs, only a modest amount of the available diversity is present in the commercial germplasm. Analysis of genetic distances shows population stratification, including a small number of large clusters centered on key lines. Nevertheless, an average fixation index of 0.06 indicates moderate differentiation between the three major maize subpopulations. Linkage disequilibrium (LD) decays very rapidly, but the extent of LD is highly dependent on the particular group of germplasm and region of the genome. The utility of these data for performing genome-wide association studies was tested with two simply inherited traits and one complex trait. We identified trait associations at SNPs very close to known candidate genes for kernel color, sweet corn, and flowering time; however, results suggest that more SNPs are needed to better explore the genetic architecture of complex traits.The genotypic information described here allows this publicly available panel to be exploited by researchers facing the challenges of sustainable agriculture through better knowledge of the nature of genetic diversity.}, number={6}, journal={GENOME BIOLOGY}, author={Romay, Maria C. and Millard, Mark J. and Glaubitz, Jeffrey C. and Peiffer, Jason A. and Swarts, Kelly L. and Casstevens, Terry M. and Elshire, Robert J. and Acharya, Charlotte B. and Mitchell, Sharon E. and Flint-Garcia, Sherry A. and et al.}, year={2013} }
 @article{peiffer_flint-garcia_de leon_mcmullen_kaeppler_buckler_2013, title={The genetic architecture of maize stalk strength}, volume={8}, number={6}, journal={PLoS One}, author={Peiffer, J. A. and Flint-Garcia, S. A. and De Leon, N. and McMullen, M. D. and Kaeppler, S. M. and Buckler, E. S.}, year={2013} }
 @article{huang_carbone_magwire_peiffer_lyman_stone_anholt_mackay, title={Genetic basis of transcriptome diversity in Drosophila melanogaster}, volume={112}, number={44}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={Huang, W. and Carbone, M. A. and Magwire, M. M. and Peiffer, J. A. and Lyman, R. F. and Stone, E. A. and Anholt, R. R. H. and Mackay, T. F. C.}, pages={E6010–6019} }