Julie Horvath

Works (14)

Updated: October 11th, 2025 05:03

2025 article

Cooking-class style fermentation as a context for co-created science and engagement

Berman, H. L., McKenney, E. A., Roche, C. E., Michalski, S., Kwon, S. H., Weichel, E., … Dunn, R. R. (2025, August 15). Microbiology Spectrum, Vol. 8.

By: H. Berman n, E. McKenney n , C. Roche n, S. Michalski*, S. Kwon*, E. Weichel*, A. Matson*, L. Nichols n  ...

author keywords: fermented food; microbiome; participatory science
topics (OpenAlex): Gut microbiota and health; Probiotics and Fermented Foods; Fermentation and Sensory Analysis
Sources: Web Of Science, NC State University Libraries
Added: August 25, 2025

2025 article

Estimating realized relatedness in free-ranging macaques by inferring identity-by-descent segments

Freudiger, A., Jovanovic, V. M., Huang, Y., Snyder-Mackler, N., Conrad, D. F., Miller, B., … Widdig, A. (2025, January 14). Proceedings of the National Academy of Sciences.

By: A. Freudiger *, V. Jovanovic *, Y. Huang *, N. Snyder-Mackler *, D. Conrad *, B. Miller *, M. Montague *, H. Westphal * ...

author keywords: SNP- based relatedness; STR- based relatedness; nonhuman primates; deep pedigrere; WGS- based relatedness
MeSH headings : Animals; Pedigree; Macaca mulatta / genetics; Female; Male; Models, Genetic; Genome / genetics
topics (OpenAlex): Primate Behavior and Ecology; Genetic and phenotypic traits in livestock; Animal Behavior and Reproduction
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Source: Web Of Science
Added: February 17, 2025

2024 article

Ecological and anthropogenic effects on the genomic diversity of lemurs in Madagascar

Orkin, J. D., Kuderna, L. F. K., Hermosilla-Albala, N., Fontsere, C., Aylward, M. L., Janiak, M. C., … Bonet, T. M. (2024, December 27). Nature Ecology & Evolution.

By: J. Orkin *, L. Kuderna *, N. Hermosilla-Albala *, C. Fontsere *, M. Aylward, M. Janiak *, N. Andriaholinirina*, P. Balaresque * ...

MeSH headings : Animals; Madagascar; Genetic Variation; Anthropogenic Effects; Lemur / genetics; Genome
topics (OpenAlex): Primate Behavior and Ecology; Genomics and Phylogenetic Studies; Amphibian and Reptile Biology; interferon and immune responses
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: January 13, 2025

2024 article

Immune gene regulation is associated with age and environmental adversity in a nonhuman primate

Watowich, M. M., Costa, C. E., Chiou, K. L., Goldman, E. A., Petersen, R. M., Patterson, S., … Snyder‐Mackler, N. (2024, July 20). Molecular Ecology.

By: M. Watowich *, C. Costa *, K. Chiou *, E. Goldman *, R. Petersen *, S. Patterson *, M. Martínez *, K. Sterner * ...

author keywords: aging; DNA methylation; environmental adversity; gene expression; gene regulation
MeSH headings : Animals; DNA Methylation / genetics; Macaca mulatta / genetics; Aging / genetics; CpG Islands / genetics; Puerto Rico; Gene Expression Regulation; Epigenesis, Genetic; Environment; Male
topics (OpenAlex): Epigenetics and DNA Methylation; RNA modifications and cancer; Genomics and Chromatin Dynamics
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UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: Web Of Science
Added: July 30, 2024

2023 article

A global catalog of whole-genome diversity from 233 primate species

Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., … Bonet, T. M. (2023, June 1). Science.

By: L. Kuderna *, H. Gao *, M. Janiak *, M. Kuhlwilm *, J. Orkin *, T. Bataillon *, S. Manu*, A. Valenzuela * ...

MeSH headings : Animals; Humans; Biological Evolution; Genome; Mutation Rate; Phylogeny; Primates / genetics; Genetic Variation; Population Density
topics (OpenAlex): Genomics and Phylogenetic Studies; Genetic diversity and population structure; Chromosomal and Genetic Variations
TL;DR: High coverage whole-genome data from 233 primate species representing 86% of genera and all 16 families was used to create a nuclear DNA phylogeny and to reassess evolutionary divergence times among primate clades. (via Semantic Scholar)
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Source: Web Of Science
Added: August 7, 2023

2023 article

Best practices for genotype imputation from low‐coverage sequencing data in natural populations

Watowich, M. M., Chiou, K. L., Graves, B., Montague, M. J., Brent, L. J. N., Higham, J. P., … Snyder‐Mackler, N. (2023, August 21). Molecular Ecology Resources.

By: M. Watowich *, K. Chiou *, B. Graves *, M. Montague *, L. Brent *, J. Higham *, J. Horvath n, A. Lu * ...

author keywords: conservation; genotyping; imputation; next-generation sequencing; population genetics
topics (OpenAlex): Genetic and phenotypic traits in livestock; Genetic diversity and population structure; Genetic Mapping and Diversity in Plants and Animals
TL;DR: It is shown that low-coverage imputed genotypes can reliably calculate genetic relatedness and population structure and endorse accurate and effective genotype imputation from low- coverage sequencing, enabling the cost-effective generation of population-scale genetic datasets necessary for tackling many pressing challenges of wildlife conservation. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: September 11, 2023

2023 article

Identification of constrained sequence elements across 239 primate genomes

Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., … Farh, K. K.-H. (2023, November 29). Nature.

By: L. Kuderna *, J. Ulirsch *, S. Rashid*, M. Ameen*, L. Sundaram *, G. Hickey *, A. Cox *, H. Gao * ...

MeSH headings : Animals; Female; Humans; Pregnancy; Conserved Sequence / genetics; Deoxyribonuclease I / metabolism; DNA / genetics; DNA / metabolism; Evolution, Molecular; Genome / genetics; Mammals / classification; Mammals / genetics; Placenta; Primates / classification; Primates / genetics; Regulatory Sequences, Nucleic Acid / genetics; Reproducibility of Results; Transcription Factors / metabolism; Proteins / genetics; Gene Expression Regulation / genetics
topics (OpenAlex): Genomics and Chromatin Dynamics; RNA and protein synthesis mechanisms; RNA Research and Splicing; Machine Learning in Bioinformatics; Genomics and Phylogenetic Studies
TL;DR: A whole-genome alignment of 239 species is constructed, representing nearly half of all extant species in the primate order and highlighting the important role of recent evolution in regulatory sequence elements differentiating primates, including humans, from other placental mammals. (via Semantic Scholar)
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Source: Web Of Science
Added: March 25, 2024

2023 article

The landscape of tolerated genetic variation in humans and primates

Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., … Farh, K. K.-H. (2023, June 1). Science.

By: H. Gao *, T. Hamp*, J. Ede *, J. Schraiber *, J. McRae *, M. Singer-Berk, Y. Yang*, A. Dietrich * ...

MeSH headings : Animals; Humans; Base Sequence; Gene Frequency; Genetic Variation; Primates / genetics; Whole Genome Sequencing
topics (OpenAlex): Genomics and Rare Diseases; CRISPR and Genetic Engineering; Genomic variations and chromosomal abnormalities
TL;DR: This resource is used to classify 6% of all possible human protein-altering variants as likely benign and impute the pathogenicity of the remaining 94% of variants with deep learning, achieving state-of-the-art accuracy for diagnosing pathogenic variants in patients with genetic diseases. (via Semantic Scholar)
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Source: Web Of Science
Added: August 7, 2023

2023 article

Yearly variation coupled with social interactions shape the skin microbiome in free-ranging rhesus macaques

Roche, C. E., Montague, M. J., Wang, J. C., Dickey, A. N., Ruiz-Lambides, A., Brent, L. J. N., … Horvath, J. E. (2023, September 26). Microbiology Spectrum.

By: C. Roche*, M. Montague *, J. Wang *, A. Dickey n, A. Ruiz-Lambides *, L. Brent *, M. Platt *, J. Horvath n

author keywords: skin microbiome; rhesus macaques; social behavior; year-to-year environment; Cayo Santiago; primates; microbial diversity; 16S rRNA
topics (OpenAlex): Dermatology and Skin Diseases; Gut microbiota and health; Tryptophan and brain disorders
TL;DR: The findings indicate that social dynamics interact with yearly environmental changes to shape the skin microbiota in rhesus macaques, with potential implications for understanding the factors affecting the microbiome in humans, which share many biological and social characteristics with these animals. (via Semantic Scholar)
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Source: Web Of Science
Added: January 2, 2024

2022 article

Limited microbiome differences in captive and semi-wild primate populations consuming similar diets

Kuthyar, S., Watson, K., Huang, S., Brent, L. J. N., Platt, M., Horvath, J., … Amato, K. R. (2022, August 30). FEMS Microbiology Ecology.

By: S. Kuthyar *, K. Watson *, S. Huang *, L. Brent *, M. Platt *, J. Horvath n, J. Gonzalez-Martinez*, M. Martínez * ...

author keywords: captivity; diet; microbiome; primate
MeSH headings : Animals; Diet / veterinary; Gastrointestinal Microbiome; Humans; Macaca mulatta; Microbiota; RNA, Ribosomal, 16S
topics (OpenAlex): Gut microbiota and health; Clostridium difficile and Clostridium perfringens research; Dietary Effects on Health
TL;DR: Although it was found that location was a significant predictor of gut microbial composition, the magnitude of observed differences was relatively small, suggesting that a shared diet may limit the typical influence of environmental microbial exposure on the gut microbiota. (via Semantic Scholar)
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Source: Web Of Science
Added: October 17, 2022

2022 article

Natural disaster and immunological aging in a nonhuman primate

Watowich, M. M., Chiou, K. L., Montague, M. J., Simons, N. D., Horvath, J. E., Ruiz-Lambides, A. V., … Snyder-Mackler, N. (2022, February 7). Proceedings of the National Academy of Sciences.

By: M. Watowich *, K. Chiou *, M. Montague *, N. Simons *, J. Horvath n, A. Ruiz-Lambides *, M. Martínez *, J. Higham * ...

MeSH headings : Age Factors; Aging / immunology; Animals; Cross-Sectional Studies; Cyclonic Storms; Disasters; Macaca / immunology; Natural Disasters / mortality; Risk Factors; Survivors / psychology
topics (OpenAlex): Immune responses and vaccinations; Neuroinflammation and Neurodegeneration Mechanisms; Mosquito-borne diseases and control
TL;DR: Living through an intense hurricane and its aftermath was associated with expression of key immune genes, dysregulated proteostasis networks, and greater expression of inflammatory immune cell-specific marker genes, suggesting that experiencing an extreme hurricane is associated with alterations in immune cell gene regulation similar to aging, potentially accelerating aspects of the aging process. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
13. Climate Action (OpenAlex)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: March 28, 2022

2022 article

Social connections predict brain structure in a multidimensional free-ranging primate society

Testard, C., Brent, L. J. N., Andersson, J., Chiou, K. L., Valle, J. E. N.-D., DeCasien, A. R., … Sallet, J. (2022, April 13). Science Advances.

By: C. Testard *, L. Brent *, J. Andersson, K. Chiou *, J. Valle *, A. DeCasien *, A. Acevedo-Ithier *, M. Stock * ...

MeSH headings : Animals; Brain / diagnostic imaging; Humans; Macaca mulatta; Social Behavior; Temporal Lobe
topics (OpenAlex): Primate Behavior and Ecology; Neuroendocrine regulation and behavior; Animal Vocal Communication and Behavior
TL;DR: It is demonstrated that the size of specific brain structures varies with the number of direct affiliative social connections and suggested that this relationship may arise during development, and proposed links between social network size, biological success, and the expansion of specificbrain circuits are reinforced. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
16. Peace, Justice and Strong Institutions (OpenAlex)
Source: Web Of Science
Added: May 10, 2022

2021 article

Variation in predicted COVID‐19 risk among lemurs and lorises

Melin, A. D., Orkin, J. D., Janiak, M. C., Valenzuela, A., Kuderna, L., Marrone, F., … Higham, J. P. (2021, April 1). American Journal of Primatology.

By: A. Melin *, J. Orkin *, M. Janiak *, A. Valenzuela *, L. Kuderna *, F. Marrone *, H. Ramangason *, J. Horvath n ...

MeSH headings : Angiotensin-Converting Enzyme 2 / chemistry; Angiotensin-Converting Enzyme 2 / genetics; Animals; COVID-19 / epidemiology; COVID-19 / veterinary; Lemur / genetics; Lorisidae / genetics; Primate Diseases / epidemiology; Primate Diseases / virology; Risk Factors
topics (OpenAlex): SARS-CoV-2 and COVID-19 Research; COVID-19 Clinical Research Studies; SARS-CoV-2 detection and testing; Long-Term Effects of COVID-19
TL;DR: This study reinforces previous results while finding additional variability in other strepsirrhine species, and suggests several clades of lemurs have high potential susceptibility to SARS‐CoV‐2 infection. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: April 19, 2021

2020 article

Rhesus macaques as a tractable physiological model of human ageing

Chiou, K. L., Montague, M. J., Goldman, E. A., Watowich, M. M., Sams, S. N., Song, J., … Snyder-Mackler, N. (2020, September 20). Philosophical Transactions of the Royal Society B Biological Sciences.

By: K. Chiou *, M. Montague *, E. Goldman *, M. Watowich *, S. Sams*, J. Song*, J. Horvath n, K. Sterner * ...

author keywords: geroscience; immunosenescence; gene regulation; primate; Cayo Santiago
MeSH headings : Aging; Animals; Gene Regulatory Networks / immunology; Humans; Immune System / metabolism; Macaca mulatta / physiology; Models, Animal
topics (OpenAlex): Dietary Effects on Health; Genetics, Aging, and Longevity in Model Organisms; Adipose Tissue and Metabolism
TL;DR: It is anticipated that continuing research in rhesus macaques and other nonhuman primates will play a critical role in conjunction with model organism and human biodemographic research in ultimately improving translational outcomes and extending health and longevity in the authors' ageing population. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: October 26, 2020

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