Jennifer E. Schaff

Works (10)

Updated: July 5th, 2023 15:54
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2018 journal article

Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement

Nature Communications, 9(1).

By: S. Wu *, K. Lau *, Q. Cao *, J. Hamilton *, H. Sun *, C. Zhou *, L. Eserman *, D. Gemenet * ...

co-author countries: Australia 🇦🇺 China 🇨🇳 Kenya 🇰🇪 Peru 🇵🇪 Uganda 🇺🇬 United States of America 🇺🇸
MeSH headings : Base Sequence; Carotenoids / metabolism; Diploidy; Ecotype; Genetic Variation; Genome, Plant; Genomics; Ipomoea batatas / genetics; Molecular Sequence Annotation; Multigene Family; Phylogeny; Plant Breeding; Polyploidy; Repetitive Sequences, Nucleic Acid / genetics
Sources: Web Of Science, ORCID, Crossref
Added: November 26, 2018

2016 journal article

Development of a universal double-digest RAD sequencing approach for a group of nonmodel, ecologically and economically important insect and fish taxa

Molecular Ecology Resources, 16(6), 1303–1314.

By: M. Burford Reiskind n , K. Coyle n, H. Daniels n, P. Labadie n, M. Reiskind n , N. Roberts n, R. Roberts n , J. Schaff n, E. Vargo*

co-author countries: United States of America 🇺🇸
author keywords: double-digest RAD sequencing; high-throughput sequencing; reduced representation sequencing; restriction enzyme digests
MeSH headings : Animals; DNA / chemistry; DNA / metabolism; DNA Restriction Enzymes / metabolism; Fishes / genetics; Genomics / methods; Insecta / genetics; Sequence Analysis, DNA / methods
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

The plant parasite Pratylenchus coffeae carries a minimal nematode genome

NEMATOLOGY, 17(6), 621–637.

By: M. Burke n, E. Scholl n, D. Bird n , J. Schaff n, S. Colman*, R. Crowell*, S. Diener*, O. Gordon* ...

co-author countries: United States of America 🇺🇸

Contributors: M. Burke n, E. Scholl n, D. Bird n, J. Schaff n, S. Colman*, R. Crowell*, S. Diener*, O. Gordon* ...

author keywords: Caenorhabditis elegans; lesion nematode; Meloidogyne hapla; migratory endoparasitic nematodes; nematode evolution; protein encoding genes
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Compartment Proteomics Analysis of White Perch (Morone americana) Ovary Using Support Vector Machines

JOURNAL OF PROTEOME RESEARCH, 13(3), 1515–1526.

By: J. Schilling n, A. Nepomuceno n, J. Schaff n, D. Muddiman n , H. Daniels n & B. Reading n 

co-author countries: United States of America 🇺🇸
author keywords: compartment proteomics; support vector machines; modulated modularity clustering; ovary; oocytes; vitellogenin; transcriptome; mitochondria; alternatively spliced variants
MeSH headings : Animals; Bass / metabolism; Chemical Fractionation; Female; Fish Proteins / analysis; Membrane Proteins / analysis; Mitochondrial Proteins / analysis; Molecular Sequence Annotation; Ovary / chemistry; Ovary / metabolism; Proteomics / methods; Support Vector Machine; Tandem Mass Spectrometry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

De novo Sequencing, Characterization, and Comparison of Inflorescence Transcriptomes of Cornus canadensis and C. florida (Cornaceae)

PLoS ONE, 8(12), e82674.

By: J. Zhang  n, R. Franks n , X. Liu n, M. Kang *, J. Keebler n, J. Schaff n, H. Huang *, Q. Xiang n 

co-author countries: China 🇨🇳 United States of America 🇺🇸

Contributors: J. Zhang  n, R. Franks n , X. Liu n, M. Kang *, J. Keebler n, J. Schaff n, H. Huang *, Q. Xiang n 

Ed(s): T. Wang

MeSH headings : Chromosome Mapping; Cornus / genetics; Cornus / growth & development; DNA, Complementary / chemistry; Flowers / genetics; Flowers / growth & development; Gene Library; Polymorphism, Single Nucleotide; Sequence Analysis, DNA; Transcriptome
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 journal article

A sequence-anchored linkage map of the plant-parasitic nematode Meloidogyne hapla reveals exceptionally high genome-wide recombination

G3-Genes Genomes Genetics, 2(7), 815–824.

By: V. Thomas, S. Fudali, J. Schaff, Q. Liu, E. Scholl, C. Opperman, D. Bird, V. Williamson

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

A method for release and multiple strand amplification of small quantities of DNA from endospores of the fastidious bacterium Pasteuria penetrans

LETTERS IN APPLIED MICROBIOLOGY, 50(5), 515–521.

By: T. Mauchline *, S. Mohan *, K. Davies *, J. Schaff n, C. Opperman n, B. Kerry*, P. Hirsch*

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 India 🇮🇳 United States of America 🇺🇸
author keywords: 16S rRNA gene; bead-beating; endospores; gyrB; microLYSIS (R)-PLUS; multiple strand amplification; Pasteuria penetrans; phi29
MeSH headings : Bacillales / genetics; Bacillales / isolation & purification; Bacterial Proteins / genetics; DNA Gyrase / genetics; DNA Primers / genetics; DNA, Bacterial / genetics; DNA, Bacterial / isolation & purification; DNA, Ribosomal / genetics; Polymerase Chain Reaction / methods; RNA, Ribosomal, 16S / genetics; Spores, Bacterial / genetics; Spores, Bacterial / isolation & purification
Source: Web Of Science
Added: August 6, 2018

2008 journal article

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens

Plant Journal, 56(5), 840–854.

By: J. Schaff, F. Mbeunkui, K. Blackburn, D. Bird  & M. Goshe

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(39), 14802–14807.

By: C. Opperman n, D. Bird n , V. Williamson *, D. Rokhsar *, M. Burke n, J. Cohn n, J. Cromer n, S. Diener n ...

co-author countries: United States of America 🇺🇸

Contributors: C. Opperman n, D. Bird n , V. Williamson *, D. Rokhsar *, M. Burke n, J. Cohn n, J. Cromer n, S. Diener n ...

author keywords: compaction; dauer; development; horizontal gene transfer; gene
MeSH headings : Animals; Base Sequence; Caenorhabditis elegans / genetics; Chromosome Mapping; Evolution, Molecular; Gene Duplication; Gene Transfer, Horizontal; Genome, Helminth; Host-Parasite Interactions / genetics; Molecular Sequence Data; Multigene Family; Operon; Phylogeny; Plants / parasitology; Synteny; Tylenchoidea / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Comprehensive Transcriptome Profiling in Tomato Reveals a Role for Glycosyltransferase in Mi-Mediated Nematode Resistance

Plant Physiology, 144(2), 1079–1092.

By: J. Schaff n, D. Nielsen n , C. Smith n, E. Scholl n & D. Bird n 

co-author countries: United States of America 🇺🇸

Contributors: J. Schaff n, D. Nielsen n , C. Smith n, E. Scholl n & D. Bird n

MeSH headings : Animals; Feeding Behavior / physiology; Gene Expression; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Silencing; Genomics; Glycosyltransferases / metabolism; Host-Parasite Interactions / physiology; Solanum lycopersicum / enzymology; Solanum lycopersicum / genetics; Solanum lycopersicum / parasitology; Oligonucleotide Array Sequence Analysis; Plant Roots / enzymology; Plant Roots / metabolism; Plant Roots / parasitology; Reproduction / physiology; Tylenchoidea / physiology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018