@article{snyder_hinshaw_welch_2015, title={Diagnostic tools for rapid detection and quantification of Weissella ceti NC36 infections in rainbow trout}, volume={60}, ISSN={["1472-765X"]}, DOI={10.1111/lam.12365}, abstractNote={Abstract}, number={2}, journal={LETTERS IN APPLIED MICROBIOLOGY}, author={Snyder, A. K. and Hinshaw, J. M. and Welch, T. J.}, year={2015}, month={Feb}, pages={103–110} }
 @article{noga_borron_hinshaw_gordon_gordon_seo_2011, title={Identification of histones as endogenous antibiotics in fish and quantification in rainbow trout (Oncorhynchus mykiss) skin and gill}, volume={37}, ISSN={["1573-5168"]}, DOI={10.1007/s10695-010-9422-7}, abstractNote={Antimicrobial polypeptides (AMPPs) are increasingly recognized as a critical component of innate host defense. Among the AMPPs, polypeptides related to histones have been identified from many animals. Using peptide mapping, we further confirm the identity of two histone-like proteins from fish as members of the H2B (sunshine bass) and H1 (rainbow trout) histone groups. We optimized the conditions for measuring rainbow trout HLP-1/H2B via sandwich ELISA. We used two antibodies, one to the amino terminus and one to the carboxyl terminus, of trout histone H2B, as the capture antibodies, and we used peroxidase-labeled antibody raised to calf histone H2B as the secondary antibody. Specificity of the detecting antibody was confirmed by specific reactivity with histone H2B in tissue extracts via western blotting. The test was reproducible and capable of detecting as little as 5 ng of histone H2B (0.05 μg/ml). Histone H2B levels expressed in gill tissue of juvenile, healthy rainbow trout were well within concentrations that are lethal to important fish pathogens. However, there was a significant, age (size)-dependent decline in histone H2B concentrations as fish matured, until levels became virtually undetectable in market-size fish. In contrast, levels in skin appeared to remain high and unchanged in small versus large fish. Antibacterial activity in skin and gill tissues was closely correlated with histone H2B concentration measured via ELISA, which supports our previous finding that histones are the major AMPPs in rainbow trout skin and gill.}, number={1}, journal={FISH PHYSIOLOGY AND BIOCHEMISTRY}, author={Noga, Edward J. and Borron, Paul J. and Hinshaw, Jeffrey and Gordon, William C. and Gordon, Linda J. and Seo, Jung-Kil}, year={2011}, month={Mar}, pages={135–152} }
 @article{welch_verner-jeffreys_dalsgaard_wiklund_evenhuis_garcia cabrera_hinshaw_drennan_lapatra_2011, title={Independent Emergence of Yersinia ruckeri Biotype 2 in the United States and Europe}, volume={77}, ISSN={["1098-5336"]}, DOI={10.1128/aem.02997-10}, abstractNote={ABSTRACT}, number={10}, journal={APPLIED AND ENVIRONMENTAL MICROBIOLOGY}, author={Welch, Timothy J. and Verner-Jeffreys, David W. and Dalsgaard, Inger and Wiklund, Thomas and Evenhuis, Jason P. and Garcia Cabrera, Jose A. and Hinshaw, Jeffrey M. and Drennan, John D. and LaPatra, Scott E.}, year={2011}, month={May}, pages={3493–3499} }
 @inbook{fornshell_hinshaw_2008, place={Ames, Iowa}, title={Better Management Practices for Flow-Through Aquaculture Systems}, ISBN={9780813818672 9780813820279}, url={http://dx.doi.org/10.1002/9780813818672.ch9}, DOI={10.1002/9780813818672.ch9}, abstractNote={This chapter contains sections titled: Introduction Flow-Through System Hydrology Site Selection Feeds and Feeding Solids Management Solids Disposal Fish Escape Predator Control Mortality Removal and Disposal Facility Operation and Maintenance References}, booktitle={Environmental Best Management Practices for Aquaculture}, publisher={Wiley-Blackwell}, author={Fornshell, Gary and Hinshaw, Jeffrey M.}, editor={Tucker, Craig S. and Hargreaves, John A.Editors}, year={2008}, pages={331–388} }
 @article{engle_pomerleau_fornshell_hinshaw_sloan_thompson_2005, title={The  economic impact of proposed effluent treatment options for production of trout Oncorhynchus mykiss in flow-through systems}, volume={32}, DOI={10.1016/j.nquaeng.2004.07.001}, number={2}, journal={Aquacultural Engineering}, author={Engle, C. R. and Pomerleau, S. and Fornshell, G. and Hinshaw, Jeffrey and Sloan, D. and Thompson, S.}, year={2005}, pages={303–323} }
 @article{engle_pomerleau_fornshell_hinshaw_sloan_thompson_2005, title={The economic impact of proposed effluent treatment options for production of trout Oncorhynchus mykiss in flow-through systems}, volume={32}, ISSN={0144-8609}, url={http://dx.doi.org/10.1016/j.aquaeng.2004.07.001}, DOI={10.1016/j.aquaeng.2004.07.001}, abstractNote={The United States Environmental Protection Agency has considered several treatment options for flow-through systems in its Effluent Limitation Guidelines rulemaking effort on aquaculture. However, the economic effects of treating effluents can impose high costs on aquaculture businesses, depending upon the treatment option selected. Survey data from trout farmers in North Carolina and Idaho were used to develop enterprise budgets, a spreadsheet-based risk analysis, and mathematical programming models of medium-sized trout farms in North Carolina (68,182 kg/yr) and Idaho (90,909 kg/yr) and large trout farms in Idaho (1,136,364 kg/yr). These analyses were used to examine the effect of imposing five different effluent treatment options on the net returns of farms raising trout in raceways. Budget analyses showed that the trout farm scenarios considered were generally profitable, although the medium-sized farms exhibited low levels of profitability. All five proposed effluent treatment options resulted in negative net returns for the medium-sized farms in both North Carolina and Idaho. The large farm scenario showed positive net returns after adding costs associated with the affluent treatment options considered, but the risk of generating positive net returns decreased from 82–84% to 10–11%. Thus, financial risk increased considerably when treatment options were imposed. The mixed-integer mathematical programming model demonstrated sensitivities to the level of credit reserves both for operating and investment capital. The effluent treatment options imposed on the models were not economically feasible at the levels of capital available on most trout farms. Subsequent runs of the model used investment capital requirements of treatment options at 50% of the original estimates. The models showed that imposing effluent treatment options forced farms to substitute production units for treatment facilities. This results from a combination of: 1) the additional capital requirements of the treatment options; 2) limited availability of credit reserves; and 3) competing uses for land in trout farming areas that put upward pressure on land prices. Many of the proposed treatment options included substantial investment capital requirements that increased annual fixed costs. Limited availability of investment capital prevented the farm expansion that would be needed to spread the increased fixed costs; hence, the models were forced to remove units from production to meet treatment constraints. Net returns decreased because farms were forced to operate at inefficient levels.}, number={2}, journal={Aquacultural Engineering}, publisher={Elsevier BV}, author={Engle, Carole R. and Pomerleau, Steeve and Fornshell, Gary and Hinshaw, Jeffrey M. and Sloan, Debra and Thompson, Skip}, year={2005}, month={Jan}, pages={303–323} }
 @article{santerre_bush_xu_lewis_davis_grodner_ingram_wei_hinshaw_2001, title={Metal residues in farm-raised channel catfish, rainbow trout, and red swamp crayfish from the southern US}, volume={66}, ISSN={["0022-1147"]}, DOI={10.1111/j.1365-2621.2001.tb11330.x}, abstractNote={ABSTRACT:  Farm‐raised channel catfish (Ictalurus punctatus), rainbow trout (Oncorhynchus mykiss), and red swamp crayfish (Procambarus clarkii) were collected from production and processing sites across the southern U.S. and analyzed for barium, cadmium, copper, chromium, silver, lead, arsenic, selenium, and mercury. Average metal residues were much lower than recommended safety limits. Residues of barium, copper, and mercury were slightly higher in crayfish than catfish or trout. Selenium was higher in crayfish and trout than catfish, and lead was higher in catfish and trout than crayfish. Residues of mercury in all samples were much lower than the FDA's Action Limit (1 ppm) for mercury in the edible tissue of fish.}, number={2}, journal={JOURNAL OF FOOD SCIENCE}, author={Santerre, CR and Bush, PB and Xu, DH and Lewis, GW and Davis, JT and Grodner, RM and Ingram, R and Wei, CI and Hinshaw, JM}, year={2001}, month={Mar}, pages={270–273} }
 @article{santerre_ingram_lewis_davis_lane_grodner_wei_bush_xu_shelton_et al._2000, title={Organochlorines, organophosphates, and pyrethroids in channel catfish, rainbow trout, and red swamp crayfish from aquaculture facilities}, volume={65}, ISSN={["0022-1147"]}, DOI={10.1111/j.1365-2621.2000.tb15985.x}, abstractNote={ABSTRACT:}, number={2}, journal={JOURNAL OF FOOD SCIENCE}, author={Santerre, CR and Ingram, R and Lewis, GW and Davis, JT and Lane, LG and Grodner, RM and Wei, CI and Bush, PB and Xu, DH and Shelton, J and et al.}, year={2000}, month={Mar}, pages={231–235} }