Jack Wang

Matthews, M. L., Wang, J. P., Sederoff, R., Chiang, V. L., & Williams, C. M. (2021). A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. https://doi.org/10.1016/j.csbj.2020.11.046

Vries, L., Brouckaert, M., Chanoca, A., Kim, H., Regner, M. R., Timokhin, V. I., … Boerjan, W. (2021, August 6). CRISPR-Cas9 editing of CAFFEOYL SHIKIMATE ESTERASE 1 and 2 shows their importance and partial redundancy in lignification in Populus tremula x P. alba. PLANT BIOTECHNOLOGY JOURNAL. https://doi.org/10.1111/pbi.13651

Lin, C.-Y., Sun, Y., Song, J., Chen, H.-C., Shi, R., Yang, C., … Chiang, V. L. (2021). Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa. FRONTIERS IN PLANT SCIENCE. https://doi.org/10.3389/fpls.2021.727932

Bing, R. G., Sulis, D. B., Wang, J. P., Adams, M. W. W., & Kelly, R. M. (2021). Thermophilic microbial deconstruction and conversion of natural and transgenic lignocellulose. ENVIRONMENTAL MICROBIOLOGY REPORTS. https://doi.org/10.1111/1758-2229.12943

Liu, B., Liu, J., Yu, J., Wang, Z., Sun, Y., Li, S., … Wang, J. P. (2021). Transcriptional reprogramming of xylem cell wall biosynthesis in tension wood. PLANT PHYSIOLOGY, 186(1), 250–269. https://doi.org/10.1093/plphys/kiab038

Wang, Z., Mao, Y., Guo, Y., Gao, J., Liu, X., Li, S., … Li, W. (2020). MYB Transcription Factor161 Mediates Feedback Regulation of Secondary wall-associated NAC-Domain1 Family Genes for Wood Formation. Plant Physiology, 9, pp.01033.2020. https://doi.org/10.1104/pp.20.01033

Matthews, M. L., Wang, J. P., Sederoff, R., Chiang, V. L., & Williams, C. M. (2020). Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1007197

Kim, H., Li, Q., Karlen, S. D., Smith, R. A., Shi, R., Liu, J., … Chiang, V. L. (2020). Monolignol Benzoates Incorporate into the Lignin of Transgenic Populus trichocarpa Depleted in C3H and C4H. ACS Sustainable Chemistry and Engineering, 8(9), 3644–3654. https://doi.org/10.1021/acssuschemeng.9b06389

Sulis, D. B., & Wang, J. P. (2020). [Review of Regulation of Lignin Biosynthesis by Post-translational Protein Modifications]. FRONTIERS IN PLANT SCIENCE, 11. https://doi.org/10.3389/fpls.2020.00914

Liu, B., & Wang, J. P. (2020). Tracheid Associated Transcription Factors in Loblolly Pine. Tree Physiology, 2. https://doi.org/10.1093/treephys/tpaa014

Straub, C. T., Bing, R. G., Wang, J. P., Chiang, V. L., Adams, M. W. W., & Kelly, R. M. (2020). Use of the lignocellulose-degrading bacterium Caldicellulosiruptor bescii to assess recalcitrance and conversion of wild-type and transgenic poplar. BIOTECHNOLOGY FOR BIOFUELS, 13(1). https://doi.org/10.1186/s13068-020-01675-2

Yeh, C.-S., Wang, Z., Miao, F., Ma, H., Kao, C.-T., Hsu, T.-S., … Lin, Y.-C. J. (2019). A novel synthetic-genetic-array-based yeast one-hybrid system for high discovery rate and short processing time. GENOME RESEARCH, 29(8), 1343–1351. https://doi.org/10.1101/gr.245951.118

Yan, X., Liu, J., Kim, H., Liu, B., Huang, X., Yang, Z., … Chiang, V. L. (2019). CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa. NEW PHYTOLOGIST, 222(1), 244–260. https://doi.org/10.1111/nph.15505

Wang, J. P., Liu, B., Sun, Y., Chiang, V. L., & Sederoff, R. R. (2019). Enzyme-Enzyme Interactions in Monolignol Biosynthesis. Frontiers in Plant Science, 9. https://doi.org/10.3389/fpls.2018.01942

Wang, J. P., Matthews, M. L., Naik, P. P., Williams, C. M., Ducoste, J. J., Sederoff, R. R., & Chiang, V. L. (2019). Flux modeling for monolignol biosynthesis. Current Opinion in Biotechnology, 56, 187–192. https://doi.org/10.1016/j.copbio.2018.12.003

Chen, H., Wang, J. P., Liu, H., Li, H., Lin, Y.-C. J., Shi, R., … Chiang, V. L. (2019). Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Populus trichocarpa. The Plant Cell, 31(3), 602–626. https://doi.org/10.1105/tpc.18.00620

Matthews, M. L., Wang, J. P., Sederoff, R., Chiang, V. L., & Williams, C. M. (2019, June 19). Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa (Vol. 6). Vol. 6. https://doi.org/10.1101/677047

Straub, C. T., Khatibi, P. A., Wang, J. P., Conway, J. M., Williams-Rhaesa, A. M., Peszlen, I. M., … Kelly, R. M. (2019). Quantitative fermentation of unpretreated transgenic poplar by Caldicellulosiruptor bescii. NATURE COMMUNICATIONS, 10(1). https://doi.org/10.1038/s41467-019-11376-6

Myburg, A. A., Hussey, S. G., Wang, J. P., Street, N. R., & Mizrachi, E. (2019). [Review of Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks]. FRONTIERS IN PLANT SCIENCE, 10. https://doi.org/10.3389/fpls.2019.00775

Li, S., Lin, Y.-C. J., Wang, P., Zhang, B., Li, M., Chen, S., … Li, W. (2019). The AREB1 Transcription Factor Influences Histone Acetylation to Regulate Drought Responses and Tolerance in Populus trichocarpa. Plant Cell, 31(3), 663–686. https://doi.org/10.1105/tpc.18.00437

Naik, P., Wang, J. P., Sederoff, R., Chiang, V., Williams, C., & Ducoste, J. J. (2018). Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis. PLoS ONE, 13(3). https://doi.org/10.1371/journal.pone.0193896

Wang, J. P., Matthews, M. L., Williams, C. M., Shi, R., Yang, C., Tunlaya-Anukit, S., … Chiang, V. L. (2018). Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. Nature Communications, 4(1). https://doi.org/10.1038/s41467-018-03863-z

Lin, Y. J., Chen, H., Li, Q., Li, W., Wang, J. P., Shi, R., … Chiang, V. L. (2017). Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa. Proceedings of the National Academy of Sciences of the United States of America, 11(45), E9722–E9729. https://doi.org/10.1073/pnas.1714422114

Shi, R., Wang, J. P., Lin, Y.-C., Li, Q., Sun, Y.-H., Chen, H., … Chiang, V. L. (2017). Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa. Planta, 245(5), 927–938. https://doi.org/10.1007/s00425-016-2640-1

Wang, J. P., Tunlaya-Anukit, S., Shi, R., Yeh, T.-F., Chuang, L., Isik, F., … Chiang, V. L. (2016). A Proteomic-Based Quantitative Analysis of the Relationship Between Monolignol Biosynthetic Protein Abundance and Lignin Content Using Transgenic Populus trichocarpa. In V. C. Kumi Yoshida & S. Quideau (Eds.), Recent Advances in Polyphenol Research (Vol. 5, pp. 89–107). https://doi.org/10.1002/9781118883303.ch4

Lin, C.-Y., Li, Q., Tunlaya-Anukit, S., Shi, R., Sun, Y.-H., Wang, J. P., … Chiang, V. L. (2016). A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa. Tree Genetics and Genomes, 12(2). https://doi.org/10.1007/s11295-016-0978-y

Lin, C.-Y., Wang, J. P., Li, Q., Chen, H.-C., Liu, J., Loziuk, P., … Chiang, V. L. (2015). 4-Coumaroyl and caffeoyl shikimic acids inhibit 4-coumaric acid:coenzyme a ligases and modulate metabolic flux for 3-hydroxylation in monolignol biosynthesis of populus trichocarpa. Molecular Plant, 8(1), 176–187. https://doi.org/10.1016/j.molp.2014.12.003

Liu, J., Hai, G., Wang, C., Cao, S., Xu, W., Jia, Z., … Cheng, Y. (2015). Comparative proteomic analysis of Populus trichocarpa early stem from primary to secondary growth. Journal of Proteomics, 126, 94–108. https://doi.org/10.1016/j.jprot.2015.05.032

Loziuk, P. L., Parker, J., Li, W., Lin, C.-Y., Wang, J. P., Li, Q., … Muddiman, D. C. (2015). Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa. Journal of Proteome Research, 14(10), 4158–4168. https://doi.org/10.1021/acs.jproteome.5b00233

Wang, J. P., Chuang, L., Loziuk, P. L., Chen, H., Lin, Y.-C., Shi, R., … Chiang, V. L. (2015). Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 112(27), 8481–8486. https://doi.org/10.1073/pnas.1510473112

Lin, Y.-C., Li, W., Chen, H., Li, Q., Sun, Y.-H., Shi, R., … Chiang, V. L. (2014). A simple improved-throughput xylem protoplast system for studying wood formation. Nature Protocols, 9(9), 2194–2205. https://doi.org/10.1038/nprot.2014.147

Wang, J. P., Naik, P. P., Chen, H.-C., Shi, R., Lin, C.-Y., Liu, J., … Chiang, V. L. (2014). Complete proteomic-based enzyme reaction and inhibition kinetics reveal how monolignol biosynthetic enzyme families affect metabolic flux and lignin in Populus trichocarpa. Plant Cell, 26(3), 894–914. https://doi.org/10.1105/tpc.113.120881

Li, Q., Song, J., Peng, S., Wang, J. P., Qu, G.-Z., Sederoff, R. R., & Chiang, V. L. (2014). Plant biotechnology for lignocellulosic biofuel production. Plant Biotechnology Journal, 12(9), 1174–1192. https://doi.org/10.1111/pbi.12273

Chen, H.-C., Song, J., Wang, J. P., Lin, Y.-C., Ducoste, J., Shuford, C. M., … Chiang, V. L. (2014). Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling. The Plant Cell, 3(3), 876–893. https://doi.org/10.1105/tpc.113.119685

Chen, H.-C., Song, J., Williams, C. M., Shuford, C. M., Liu, J., Wang, J. P., … Chiang, V. L. (2013). Monolignol pathway 4-coumaric acid: Coenzyme A ligases in populus trichocarpa: Novel specificity, metabolic regulation, and simulation of coenzyme a ligation fluxes. Plant Physiology, 161(3), 1501–1516. https://doi.org/10.1104/pp.112.210971

Shi, R., Shuford, C. M., Wang, J. P., Sun, Y.-H., Yang, Z., Chen, H.-C., … Chiang, V. L. (2013). Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa. Planta, 238(3), 487–497. https://doi.org/10.1007/s00425-013-1905-1

Loziuk, P. L., Wang, J., Li, Q., Sederoff, R. R., Chiang, V. L., & Muddiman, D. C. (2013). Understanding the role of proteolytic digestion on discovery and targeted proteomic measurements using liquid chromatography tandem mass spectrometry and design of experiments. Journal of Proteome Research, 12(12), 5820–5829. https://doi.org/10.1021/pr4008442

Shuford, C. M., Li, Q., Sun, Y.-H., Chen, H.-C., Wang, J., Shi, R., … Muddiman, D. C. (2012). Comprehensive quantification of monolignol-pathway enzymes in populus trichocarpa by protein cleavage isotope dilution mass spectrometry. Journal of Proteome Research, 11(6), 3390–3404. https://doi.org/10.1021/pr300205a

Wang, J. P., Shuford, C. M., Li, Q., Song, J., Lin, Y.-C., Sun, Y.-H., … al. (2012). Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC–MS/MS based protein quantification and metabolic flux analysis. Planta, 236(3), 795–808. https://doi.org/10.1007/s00425-012-1663-5

Li, Q., Min, D., Wang, J. P.-Y., Peszlen, I., Horvath, L., Horvath, B., … Chiang, V. L. (2011). Down-regulation of glycosyltransferase 8D genes in Populus trichocarpa caused reduced mechanical strength and xylan content in wood. Tree Physiology, 31(2), 226–236. https://doi.org/10.1093/treephys/tpr008

Yeh, T.-F., Wang, J., Shi, R., Sun, Y.-H., & Chiang, V. L. (2007). A novel O-methyl transferase-like gene with a drastic ectopic expression in response to tension wood formation in Populus trichocarpa. Cellulose Chemistry and Technology, 41(9-10), 521–528.

Yeh T.F., W. J. P., Shi R., S. Y. H., & V.L., C. (2007). A novel O-methyl transferase-like gene with drastic ectopic expression in response to tension wood formation in Populus trichocarpa. Cellulose Chemistry and Technology, 41, 521–528.