Jonathan S Lindsey

Absorption and fluorescence spectra of open-chain tetrapyrrole pigments-bilirubins, biliverdins, phycobilins, and synthetic analogues

JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C-PHOTOCHEMISTRY REVIEWS, 55.

Article Tethered Indoxyl-Glucuronides for Enzymatically Triggered Cross-Linking

MOLECULES, 28(10).

Bacteriochlorin syntheses - Status, problems, and exploration

JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 8.

Core chromophores of native photosynthetic pigments

In J. M. H. Hou & S. I. Allakhverdiev (Eds.), Photosynthesis (Vol. 3, pp. 33–48).

Digital Database of Absorption Spectra of Diverse Flavonoids Enables Structural Comparisons and Quantitative Evaluations

[Review of ]. JOURNAL OF NATURAL PRODUCTS, 86(4), 1087–1119.

Dyads with tunable near-infrared donor-acceptor excited-state energy gaps: molecular design and Forster analysis for ultrafast energy transfer

Jing, H., Magdaong, N. C. M., Diers, J. R., Kirmaier, C., Bocian, D. F., Holten, D., & Lindsey, J. S. (2023, January 5). PHYSICAL CHEMISTRY CHEMICAL PHYSICS, Vol. 1.

Four Routes to 3-(3-Methoxy-1,3-dioxopropyl)pyrrole, a Core Motif of Rings C and E in Photosynthetic Tetrapyrroles

MOLECULES, 28(3).

Indoxyl-glucosides bearing tethers for enzymatically triggered cross-linking

NEW JOURNAL OF CHEMISTRY, 47(17), 8223–8242.

Investigation of a bacteriochlorin-containing pentad array for panchromatic light-harvesting and charge separation

Jing, H., Magdaong, N. C. M., Diers, J. R., Kirmaier, C., Bocian, D. F., Holten, D., & Lindsey, J. S. (2023, January 4). PHYSICAL CHEMISTRY CHEMICAL PHYSICS, Vol. 1.

Synthesis of a BC-Dihydrodipyrrin Building Block of Bacteriochlorophyll a

Nguyen, K. C., & Lindsey, J. S. (2023, July 20). JOURNAL OF ORGANIC CHEMISTRY, Vol. 7.

Synthesis of model southern rim structures of photosynthetic tetrapyrroles and phyllobilins

Nguyen Tran, A. T., Wu, Z., Chung, D. T. M., Nalaoh, P., & Lindsey, J. S. (2023, July 5). NEW JOURNAL OF CHEMISTRY, Vol. 7.

Tolyporphins-Exotic Tetrapyrrole Pigments in a Cyanobacterium-A Review

[Review of ]. MOLECULES, 28(16).

Balancing Panchromatic Absorption and Multistep Charge Separation in a Compact Molecular Architecture br

Roy, A., Magdaong, N. C. M., Jing, H., Rong, J., Diers, J. R., Kang, H. S., … Holten, D. (2022, December 12). JOURNAL OF PHYSICAL CHEMISTRY A, Vol. 12.

Beyond green with synthetic chlorophylls - Connecting structural features with spectral properties

JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C-PHOTOCHEMISTRY REVIEWS, 52.

Chasing the green echiuran worm Bonellia in tidal pools of Okinawa

FRONTIERS IN BIOLOGICAL DETECTION: FROM NANOSENSORS TO SYSTEMS XIV, Vol. 11979.

Meso bromination and derivatization of synthetic bacteriochlorins

NEW JOURNAL OF CHEMISTRY, 46(12), 5556–5572.

Panchromatic Absorbers Tethered for Bioconjugation or Surface Attachment

MOLECULES, 27(19).

Phenylene-linked tetrapyrrole arrays containing free base and diverse metal chelate forms - Versatile synthetic architectures for catalysis and artificial photosynthesis

[Review of ]. COORDINATION CHEMISTRY REVIEWS, 456.

Phyllobilins - Bioactive Natural Products Derived from Chlorophyll - Plant Origins, Structures, Absorption Spectra, and Biomedical Properties

Karg, C. A., Taniguchi, M., Lindsey, J. S., & Moser, S. (2022, December 8). PLANTA MEDICA, Vol. 12.

Probing the Effects of Electronic-Vibrational Resonance on the Rate of Excited-State Energy Transfer in Bacteriochlorin Dyads

JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 13(34), 7906–7910.

Simple Dipyrrin Analogues of Prodigiosin for Use as Colistin Adjuvants

Siwawannapong, K., Nemeth, A. M., Melander, R. J., Rong, J., Davis, J. R., Taniguchi, M., … Melander, C. (2022, July 8). CHEMMEDCHEM, Vol. 7.

Syntheses and Properties of Metalated Tetradehydrocorrins

INORGANIC CHEMISTRY, 61(31), 12308–12317.

Synthesis of bacteriochlorins bearing diverse beta-substituents

Jing, H., Wang, P., Chen, B., Jiang, J., Vairaprakash, P., Liu, S., … Lindsey, J. S. (2022, March 2). NEW JOURNAL OF CHEMISTRY, Vol. 3.

Tailoring the AIE Chromogen 2-(2-Hydroxyphenyl)benzothiazole for Use in Enzyme-Triggered Molecular Brachytherapy

MOLECULES, 27(24).

A perspective on the redox properties of tetrapyrrole macrocycles

Diers, J. R., Kirmaier, C., Taniguchi, M., Lindsey, J. S., Bocian, D. F., & Holten, D. (2021, September 7). PHYSICAL CHEMISTRY CHEMICAL PHYSICS, Vol. 9.

Absorption and Fluorescence Spectral Database of Chlorophylls and Analogues

PHOTOCHEMISTRY AND PHOTOBIOLOGY, 97(1), 136–165.

Comprehensive review of photophysical parameters (epsilon, Phi(f), tau(s)) of tetraphenylporphyrin (H2TPP) and zinc tetraphenylporphyrin (ZnTPP) - Critical benchmark molecules in photochemistry and photosynthesis

[Review of ]. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C-PHOTOCHEMISTRY REVIEWS, 46, 100401.

Considerations of the biosynthesis and molecular diversity of tolyporphins

Lindsey, J. S. (2021, June 22). NEW JOURNAL OF CHEMISTRY, Vol. 6.

Electronic Structure and Excited-State Dynamics of Rylene-Tetrapyrrole Panchromatic Absorbers

JOURNAL OF PHYSICAL CHEMISTRY A, 125(36), 7900–7919.

Fluorescence Assay for Tolyporphins Amidst Abundant Chlorophyll in Crude Cyanobacterial Extracts

Nguyen, K.-U., Zhang, R., Taniguchi, M., & Lindsey, J. S. (2021, July 16). PHOTOCHEMISTRY AND PHOTOBIOLOGY, Vol. 7.

Identification of Putative Biosynthetic Gene Clusters for Tolyporphins in Multiple Filamentous Cyanobacteria

LIFE-BASEL, 11(8).

In Situ, Protein-Mediated Generation of a Photochemically Active Chlorophyll Analogue in a Mutant Bacterial Photosynthetic Reaction Center

BIOCHEMISTRY, 60(16), 1260–1275.

Natural Product Gene Clusters in the Filamentous Nostocales Cyanobacterium HT-58-2

LIFE-BASEL, 11(4).

Single-Fluorophore Single-Chain Nanoparticle Undergoes Fluorophore-Driven Assembly with Fluorescence Features Retained in Physiological Milieu

ACS APPLIED POLYMER MATERIALS, 3(4), 1767–1776.

Study of conditions for streamlined assembly of a model bacteriochlorophyll from two dihydrodipyrrin halves

NEW JOURNAL OF CHEMISTRY, 45(2), 569–581.

Synthesis of AD-Dihydrodipyrrins Equipped with Latent Substituents of Native Chlorophylls and Bacteriochlorophylls

JOURNAL OF ORGANIC CHEMISTRY, 86(17), 11794–11811.

Synthesis of model bacteriochlorophylls containing substituents of native rings A, C and E

Chung, D. T. M., Tran, P. V., Chau Nguyen, K., Wang, P., & Lindsey, J. S. (2021, July 8). NEW JOURNAL OF CHEMISTRY, Vol. 7.

Tolyporphins A-R, unusual tetrapyrrole macrocycles in a cyanobacterium from Micronesia, assessed quantitatively from the culture HT-58-2

Timothy J. O'Donnell, Gurr, J. R., Dai, J., Taniguchi, M., Williams, P. G., & Lindsey, J. S. (2021, June 8). NEW JOURNAL OF CHEMISTRY, Vol. 6.

Absorption and fluorescence spectra of organic compounds from 40 sources - archives, repositories, databases, and literature search engines

REPORTERS, MARKERS, DYES, NANOPARTICLES, AND MOLECULAR PROBES FOR BIOMEDICAL APPLICATIONS XII, Vol. 11256.

Analysis of Wikipedia pageviews to identify popular chemicals

REPORTERS, MARKERS, DYES, NANOPARTICLES, AND MOLECULAR PROBES FOR BIOMEDICAL APPLICATIONS XII, Vol. 11256.

Bacteriochlorin-bis(spermine) conjugate affords an effective photodynamic action to eradicate microorganisms

JOURNAL OF BIOPHOTONICS, 13(2).

Bioconjugatable synthetic chlorins rendered water-soluble with three PEG-12 groups via click chemistry

JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 24(1-3), 362–378.

Chromogenic agents built around a multifunctional double-triazine framework for enzymatically triggered cross-linking under physiological conditions

NEW JOURNAL OF CHEMISTRY, 44(10), 3856–3867.

Crystal Structure of 1,9-Dibromo-5-phenyldipyrrin, Tetrapyrrole Synthesis Derivative and Free Base Ligand of BODIPY Building Blocks

X-RAY STRUCTURE ANALYSIS ONLINE, 36, 21–22.

Engineering of an archaeal phosphodiesterase to trigger aggregation-induced emission (AIE) of synthetic substrates

NEW JOURNAL OF CHEMISTRY, 44(33), 14266–14277.

Enzymatically triggered chromogenic cross-linking agents under physiological conditions

NEW JOURNAL OF CHEMISTRY, 44(3), 719–743.

Fourfold alkyl wrapping of a copper(II) porphyrin thwarts macrocycle pi-pi stacking in a compact supramolecular package

ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY, 76, 647-+.

Photophysical Properties and Electronic Structure of Zinc(II) Porphyrins Bearing 0-4 meso-Phenyl Substituents: Zinc Porphine to Zinc Tetraphenylporphyrin (ZnTPP)

JOURNAL OF PHYSICAL CHEMISTRY A, 124(38), 7776–7794.

Riley Oxidation of Heterocyclic Intermediates on Paths to Hydroporphyrins-A Review

[Review of ]. MOLECULES, 25(8).

Use of the Nascent Isocyclic Ring to Anchor Assembly of the Full Skeleton of Model Chlorophylls

JOURNAL OF ORGANIC CHEMISTRY, 85(2), 702–715.

Annulated bacteriochlorins for near- infrared photophysical studies

NEW JOURNAL OF CHEMISTRY, 43(19), 7209–7232.

Cellular localization of tolyporphins, unusual tetrapyrroles, in a microbial photosynthetic community determined using hyperspectral confocal fluorescence microscopy

Photosynthesis Research, 141(3), 259–271.

Developing a user community in the photosciences: a website for spectral data and access to PhotochemCAD

(S. Achilefu & R. Raghavachari, Eds.). REPORTERS, MARKERS, DYES, NANOPARTICLES, AND MOLECULAR PROBES FOR BIOMEDICAL APPLICATIONS XI, Vol. 10893.

Heuristics from Modeling of Spectral Overlap in Forster Resonance Energy Transfer (FRET)

JOURNAL OF CHEMICAL INFORMATION AND MODELING, 59(2), 652–667.

New molecular design for blue BODIPYs

NEW JOURNAL OF CHEMISTRY, 43(19), 7233–7242.

Self-assembly with fluorescence readout in a free base dipyrrin-polymer triggered by metal ion binding in aqueous solution

NEW JOURNAL OF CHEMISTRY, 43(24), 9711–9724.

Single-Polymer-Single-Cargo Strategy Packages Hydrophobic Fluorophores in Aqueous Solution with Retention of Inherent Brightness

ACS MACRO LETTERS, 8(1), 79–83.

Synthesis of the Ring C Pyrrole of Native Chlorophylls and Bacteriochlorophylls

JOURNAL OF ORGANIC CHEMISTRY, 84(17), 11286–11293.

Chlorophyll-inspired red-region fluorophores: Building block synthesis and studies in aqueous media

Molecules, 23(1).

Database of Absorption and Fluorescence Spectra of > 300 Common Compounds for use in PhotochemCAD

Database of Absorption and Fluorescence Spectra of > 300 Common Compounds for use in PhotochemCAD. PHOTOCHEMISTRY AND PHOTOBIOLOGY, 94(2), 290–327.

Expanding Covalent Attachment Sites of Nonnative Chromophores to Encompass the C-Terminal Hydrophilic Domain in Biohybrid Light-Harvesting Architectures

CHEMPHOTOCHEM, 2(3), 300–313.

Genome sequence, metabolic properties and cyanobacterial attachment of Porphyrobacter sp. HT-58-2 isolated from a filamentous cyanobacterium–microbial consortium

Microbiology, 164(10), 1229–1239.

Origin of Panchromaticity in Multichromophore-Tetrapyrrole Arrays

JOURNAL OF PHYSICAL CHEMISTRY A, 122(36), 7181–7201.

PhotochemCAD 3: Diverse Modules for Photophysical Calculations with Multiple Spectral Databases

PHOTOCHEMISTRY AND PHOTOBIOLOGY, 94(2), 277–289.

Red and near-infrared fluorophores inspired by chlorophylls. Consideration of practical brightness in multicolor flow cytometry and biomedical sciences

(S. Achilefu & R. Raghavachari, Eds.). REPORTERS, MARKERS, DYES, NANOPARTICLES, AND MOLECULAR PROBES FOR BIOMEDICAL APPLICATIONS X, Vol. 10508.

Synthesis of arrays containing porphyrin, chlorin, and perylene-imide constituents for panchromatic light-harvesting and charge separation

RSC ADVANCES, 8(42), 23854–23874.

Total synthesis campaigns toward chlorophylls and related natural hydroporphyrins - diverse macrocycles, unrealized opportunities

[Review of ]. NATURAL PRODUCT REPORTS, 35(9), 879–901.

Unusual Stability of a Bacteriochlorin Electrocatalyst under Reductive Conditions. A Case Study on CO2 Conversion to CO

ACS CATALYSIS, 8(11), 10131–10136.

Characterization of Hydroporphyrins Covalently Attached to Si(100)

JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 21(7-8), 453–464.

Construction of the Bacteriochlorin Macrocycle with Concomitant Nazarov Cyclization To Form the Annulated Isocyclic Ring: Analogues of Bacteriochlorophyll a

JOURNAL OF ORGANIC CHEMISTRY, 82(5), 2489–2504.

Genome Sequence and Composition of a Tolyporphin-Producing Cyanobacterium-Microbial Community

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(19).

Hydrogen Evolution Catalysis by a Sparsely Substituted Cobalt Chlorin

ACS CATALYSIS, 7(5), 3597–3606.

Mass spectrometric detection of chlorophyll a and the tetrapyrrole secondary metabolite tolyporphin A in the filamentous cyanobacterium HT-58-2. Approaches to high-throughput screening of intact cyanobacteria

JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 21(11), 759–768.

Multi-step excitation energy transfer engineered in genetic fusions of natural and synthetic light-harvesting proteins

Journal of the Royal Society Interface, 14(127).

Quantitation of Tolyporphins, Diverse Tetrapyrrole Secondary Metabolites with Chlorophyll-Like Absorption, from a Filamentous Cyanobacterium-Microbial Community

Phytochemical Analysis, 29(2), 205–216.

Synthesis and photophysical characterization of bacteriochlorins equipped with integral swallowtail substituents

NEW JOURNAL OF CHEMISTRY, 41(11), 4360–4376.

Synthesis and spectral properties of meso-arylbacteriochlorins, including insights into essential motifs of their hydrodipyrrin precursors

Molecules, 22(4).

Synthesis of tailored hydrodipyrrins and their examination in directed routes to bacteriochlorins and tetradehydrocorrins

New Journal of Chemistry, 41(19), 11170–11189.

Synthesis, photophysics and electronic structure of oxobacteriochlorins

NEW JOURNAL OF CHEMISTRY, 41(10), 3732–3744.

Synthetic Chlorins, Possible Surrogates for Chlorophylls, Prepared by Derivatization of Porphyrins

[Review of ]. CHEMICAL REVIEWS, 117(2), 344–535.

Tailoring Panchromatic Absorption and Excited-State Dynamics of Tetrapyrrole–Chromophore (Bodipy, Rylene) Arrays—Interplay of Orbital Mixing and Configuration Interaction

Journal of the American Chemical Society, 139(48), 17547–17564.

The Porphobilinogen Conundrum in Prebiotic Routes to Tetrapyrrole Macrocycles

ORIGINS OF LIFE AND EVOLUTION OF BIOSPHERES, 47(1), 93–119.

Bioconjugatable, PEGylated hydroporphyrins for photochemistry and photomedicine. Narrow-band, near-infrared-emitting bacteriochlorins

NEW JOURNAL OF CHEMISTRY, 40(9), 7750–7767.

Bioconjugatable, PEGylated hydroporphyrins for photochemistry and photomedicine. Narrow-band, red-emitting chlorins

NEW JOURNAL OF CHEMISTRY, 40(9), 7721–7740.

Complexity in structure-directed prebiotic chemistry. Reaction bifurcation from a beta-diketone in tetrapyrrole formation

NEW JOURNAL OF CHEMISTRY, 40(7), 6434–6440.

Complexity in structure-directed prebiotic chemistry. Unexpected compositional richness from competing reactants in tetrapyrrole formation

NEW JOURNAL OF CHEMISTRY, 40(7), 6421–6433.

Northern-Southern Route to Synthetic Bacteriochlorins

JOURNAL OF ORGANIC CHEMISTRY, 81(23), 11882–11897.

Panchromatic chromophore–tetrapyrrole light-harvesting arrays constructed from Bodipy, perylene, terrylene, porphyrin, chlorin, and bacteriochlorin building blocks

New Journal of Chemistry, 40(9), 8032–8052.

Photophysical Properties and Electronic Structure of Porphyrins Bearing Zero to Four meso-Phenyl Substituents: New Insights into Seemingly Well Understood Tetrapyrroles

JOURNAL OF PHYSICAL CHEMISTRY A, 120(49), 9719–9731.

Photophysical comparisons of PEGylated porphyrins, chlorins and bacteriochlorins in water

NEW JOURNAL OF CHEMISTRY, 40(11), 9648–9656.

Scope and limitations of two model prebiotic routes to tetrapyrrole macrocycles

NEW JOURNAL OF CHEMISTRY, 40(9), 7445–7455.

Synthesis and photophysical characteristics of 2,3,12,13-tetraalkylbacteriochlorins

Zhang, S., Kim, H.-J., Tang, Q., Yang, E., Bocian, D. F., Holten, D., & Lindsey, J. S. (2016, July 1). NEW JOURNAL OF CHEMISTRY, Vol. 40, pp. 5942–5956.