Works (7)

Updated: April 23rd, 2025 19:19

2023 article

Interplay between transcriptional regulators and VapBC toxin–antitoxin loci during thermal stress response in extremely thermoacidophilic archaea

Cooper, C. R., Lewis, A. M., Notey, J. S., Mukherjee, A., Willard, D. J., Blum, P. H., & Kelly, R. M. (2023, February 8). Environmental Microbiology, Vol. 2.

MeSH headings : Antitoxins / genetics; Toxins, Biological / genetics; Toxins, Biological / metabolism; Heat-Shock Response / genetics; Sulfolobus solfataricus / genetics; Sulfolobus solfataricus / metabolism; Escherichia coli / genetics
topics (OpenAlex): Enzyme Structure and Function; Genomics and Phylogenetic Studies; Protein Structure and Dynamics
TL;DR: The interplay between VapBC TA loci and heat shock regulators in Sa. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: March 13, 2023

2014 article

A mutant (‘lab strain’) of the hyperthermophilic archaeon Pyrococcus furiosus, lacking flagella, has unusual growth physiology

Lewis, D. L., Notey, J. S., Chandrayan, S. K., Loder, A. J., Lipscomb, G. L., Adams, M. W. W., & Kelly, R. M. (2014, December 3). Extremophiles, Vol. 19, pp. 269–281.

By: D. Lewis n, J. Notey n, S. Chandrayan*, A. Loder n, G. Lipscomb*, M. Adams*, R. Kelly n

author keywords: Pyrococcus furiosus; Hyperthermophile; Archaeon; Growth physiology; Flagella
MeSH headings : Cell Proliferation; Flagella / genetics; Flagella / ultrastructure; Genes, Bacterial; Mutation; Phenotype; Pyrococcus furiosus / genetics; Pyrococcus furiosus / growth & development; Pyrococcus furiosus / metabolism; Pyrococcus furiosus / physiology; Transcriptome
topics (OpenAlex): Photosynthetic Processes and Mechanisms; Bacterial Genetics and Biotechnology; Protist diversity and phylogeny
TL;DR: It is indicated that flagella play a key role, beyond motility, in the growth physiology of P. furiosus and, unlike the WT, showed minimal evidence of exopolysaccharide-based cell aggregation in post-exponential phase. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Erratum to: Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2

Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, August 14). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 1837–1837.

By: G. Andrews n, D. Lewis n, J. Notey n, R. Kelly n & D. Muddiman n

topics (OpenAlex): Advanced Proteomics Techniques and Applications; S100 Proteins and Annexins; Enzyme Structure and Function
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Erratum to: Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting

Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, August 12). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 1839–1839.

By: G. Andrews n, D. Lewis n, J. Notey n, R. Kelly n & D. Muddiman n

topics (OpenAlex): Advanced Proteomics Techniques and Applications; Machine Learning in Bioinformatics; Genomics and Phylogenetic Studies
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2

Muddiman, D., Andrews, G., Lewis, D., Notey, J., & Kelly, R. (2010, July 10). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 377–389.

By: D. Muddiman n, G. Andrews n, D. Lewis n, J. Notey n & R. Kelly n

author keywords: Secretome; Caldicellulosiruptor saccharolyticus; GeLC-MS2; Thermophile; Sample preparation
MeSH headings : Bacterial Proteins / analysis; Bacterial Proteins / metabolism; Chromatography, Liquid; Electrophoresis, Polyacrylamide Gel; Extracellular Space / metabolism; Gram-Positive Bacteria / metabolism; Proteome / analysis; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Temperature
topics (OpenAlex): Advanced Proteomics Techniques and Applications; Enzyme Structure and Function; Protein Structure and Dynamics
TL;DR: In an effort to define the extracellular proteome of the extreme thermophilic bacterium Caldicellulosiruptor saccharolyticus, several techniques were considered regarding sample processing to achieve the most in-depth analysis of secreted proteins. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting

Muddiman, D., Andrews, G., Lewis, D., Notey, J., & Kelly, R. (2010, June 26). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 391–404.

By: D. Muddiman n, G. Andrews n, D. Lewis n, J. Notey n & R. Kelly n

author keywords: Thermotoga maritima; Caldicellulosiruptor saccharolyticus; GeLC-MS2; Co-cultivation; Intracellular proteome; Spectral counting
MeSH headings : Bacterial Proteins / analysis; Bacterial Proteins / metabolism; Chemotaxis; Chromatography, Liquid; Coculture Techniques; Electrophoresis, Polyacrylamide Gel; Fourier Analysis; Gram-Positive Bacteria / growth & development; Gram-Positive Bacteria / metabolism; Intracellular Space / metabolism; Proteome / analysis; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Spectrum Analysis / statistics & numerical data; Temperature; Thermotoga maritima / growth & development; Thermotoga maritima / metabolism
topics (OpenAlex): Advanced Proteomics Techniques and Applications; Bacteriophages and microbial interactions; Genomics and Phylogenetic Studies
TL;DR: Altering in growth conditions of these bacterial thermophilic microorganisms offer a glimpse into the intricacy of microbial behavior and interaction as well as insight into microbial interaction and behavior. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

The genusThermotoga: recent developments

Frock, A. D., Notey, J. S., & Kelly, R. M. (2010, June 17). Environmental Technology, Vol. 31, pp. 1169–1181.

By: A. Frock n, J. Notey n & R. Kelly n

author keywords: Thermotoga; extreme thermophiles; genomics; microbial physiology
MeSH headings : Biofilms; Carbohydrate Metabolism / genetics; Genome, Bacterial; Genomics; RNA, Ribosomal, 16S / genetics; Thermotoga maritima / enzymology; Thermotoga maritima / genetics; Thermotoga maritima / metabolism; Thermotoga maritima / physiology
topics (OpenAlex): Nematode management and characterization studies; Protist diversity and phylogeny
TL;DR: Recent developments in genome sequences have become available for a number of Thermotoga species, leading to functional genomics efforts to understand growth physiology as well as genomics‐based identification and characterization of novel high‐temperature biocatalysts. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

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