@misc{nardini_baker_simpson_flores_2021, title={Learning differential equation models from stochastic agent-based model simulations}, volume={18}, ISBN={1742-5662}, DOI={10.1098/rsif.2020.0987}, number={176}, journal={JOURNAL OF THE ROYAL SOCIETY INTERFACE}, author={Nardini, John T. and Baker, Ruth E. and Simpson, Matthew J. and Flores, Kevin B.}, year={2021} } @article{nardini_stolz_flores_harrington_byrne_2021, title={Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis}, DOI={10.1371/journal.pcbi.1009094}, journal={PLOS COMPUTATIONAL BIOLOGY}, author={Nardini, John T. and Stolz, Bernadette J. and Flores, Kevin B. and Harrington, Heather A. and Byrne, Helen M.}, year={2021}, month={Jun} } @misc{everett_flores_henscheid_lagergren_larripa_li_nardini_nguyen_pitman_rutter_2020, title={A tutorial review of mathematical techniques for quantifying tumor heterogeneity}, volume={17}, ISBN={1551-0018}, DOI={10.3934/mbe.2020207}, number={4}, journal={MATHEMATICAL BIOSCIENCES AND ENGINEERING}, author={Everett, Rebecca and Flores, Kevin B. and Henscheid, Nick and Lagergren, John and Larripa, Kamila and Li, Ding and Nardini, John T. and Nguyen, Phuong T. T. and Pitman, E. Bruce and Rutter, Erica M.}, year={2020}, pages={3660–3709} } @article{lagergren_nardini_baker_simpson_flores_2020, title={Biologically-informed neural networks guide mechanistic modeling from sparse experimental data}, volume={16}, ISBN={1553-7358}, DOI={10.1371/journal.pcbi.1008462}, number={12}, journal={PLOS COMPUTATIONAL BIOLOGY}, author={Lagergren, John H. and Nardini, John T. and Baker, Ruth E. and Simpson, Matthew J. and Flores, Kevin B.}, year={2020}, month={Dec} } @article{nardini_lagergren_hawkins-daarud_curtin_morris_rutter_swanson_flores_2020, title={Learning Equations from Biological Data with Limited Time Samples}, volume={82}, ISBN={1522-9602}, DOI={10.1007/s11538-020-00794-z}, number={9}, journal={BULLETIN OF MATHEMATICAL BIOLOGY}, author={Nardini, John T. and Lagergren, John H. and Hawkins-Daarud, Andrea and Curtin, Lee and Morris, Bethan and Rutter, Erica M. and Swanson, Kristin R. and Flores, Kevin B.}, year={2020} } @article{lagergren_nardini_michael lavigne_rutter_flores_2020, title={Learning partial differential equations for biological transport models from noisy spatio-temporal data}, volume={476}, ISBN={1471-2946}, DOI={10.1098/rspa.2019.0800}, number={2234}, journal={PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES}, author={Lagergren, John H. and Nardini, John T. and Michael Lavigne, G. and Rutter, Erica M. and Flores, Kevin B.}, year={2020} } @article{nardini_bortz_2019, title={The influence of numerical error on parameter estimation and uncertainty quantification for advective PDE models}, volume={35}, ISBN={1361-6420}, DOI={10.1088/1361-6420/ab10bb}, number={6}, journal={INVERSE PROBLEMS}, author={Nardini, John T. and Bortz, D. M.}, year={2019}, month={Jun} } @article{banks_choi_huffman_nardini_poag_thompson_2013, title={Quantifying CFSE label decay in flow cytometry data}, volume={26}, DOI={10.1016/j.aml.2012.12.010}, number={5}, journal={Applied Mathematics Letters}, author={Banks, H. T. and Choi, A. and Huffman, T. and Nardini, J. and Poag, L. and Thompson, W. C.}, year={2013}, pages={571–577} }