Lisa Van den Broeck

Madison, I., Tahir, M., Broeck, L. V., Phan, L., Horn, T., & Sozzani, R. (2024, February 1). Cell-material interactions in 3D bioprinted plant cells. https://doi.org/10.1101/2024.01.30.578043

Pérez-Sancho, J., Broeck, L. V., García-Caparros, P., & Sozzani, R. (2024). Insights into multilevel spatial regulation within the root stem cell niche. Current Opinion in Genetics & Development. https://doi.org/10.1016/j.gde.2024.102200

Van den Broeck, L., Bhosale, D. K., Song, K., Fonseca de Lima, C. F., Ashley, M., Zhu, T., … Sozzani, R. (2023). Functional annotation of proteins for signaling network inference in non-model species. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-40365-z

Amin, F., Van den Broeck, L., De Smet, I., Locke, A. M., & Sozzani, R. (2023). Optimal Brain Dissection in Dense Autoencoders: Towards Determining Feature Importance in -Omics Data. Presented at the 2023 IEEE 5th International Conference on BioInspired Processing (BIP). https://doi.org/10.1109/BIP60195.2023.10379275

Madison, I., Gillan, L., Peace, J., Gabrieli, F., Broeck, L., Jones, J. L., & Sozzani, R. (2023, August 23). Phosphate starvation: response mechanisms and solutions (D. Ort, Ed.). JOURNAL OF EXPERIMENTAL BOTANY, Vol. 8. https://doi.org/10.1093/jxb/erad326

Mahatma, S., Broeck, L. V., Morffy, N., Staller, M. V., Strader, L. C., & Sozzani, R. (2023, March 22). Prediction and functional characterization of transcriptional activation domains. https://doi.org/10.1109/CISS56502.2023.10089768

Gaudinier, A., Broeck, L. V., Moreno-Risueño, M., Rodriguez-Medina, J., Sozzani, R., & Brady, S. M. (2023, December 6). Quantitative Modeling of the Short-Term Response to Nitrogen Availability that Coordinates Early Events in Lateral Root Initiation. https://doi.org/10.1101/2023.12.05.570292

Beretta, V. M., Franchini, E., Din, I. U., Lacchini, E., Broeck, L., Sozzani, R., … Kater, M. M. (2023, April 21). The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice. PLANT JOURNAL, Vol. 4. https://doi.org/10.1111/tpj.16229

Broeck, L. V., Schwartz, M. F., Krishnamoorthy, S., Spurney, R. J., Tahir, M. A., Melvin, C., … Sozzani, R. (2022, March 27). Establishing a reproducible approach for the controllable deposition and maintenance of plants cells with 3D bioprinting (Vol. 3). Vol. 3. https://doi.org/10.1101/2022.03.25.485804

Broeck, L. V., Schwartz, M. F., Krishnamoorthy, S., Tahir, M. A., Spurney, R. J., Madison, I., … Sozzani, R. (2022). Establishing a reproducible approach to study cellular functions of plant cells with 3D bioprinting. Science Advances. https://doi.org/10.1126/sciadv.abp9906

Broeck, L. V., Bhosale, D., Song, K., Lima, C. F., Ashley, M., Zhu, T., … Sozzani, R. (2022, November 11). Functional annotation of proteins for signaling network inference in non-model species. https://doi.org/10.21203/rs.3.rs-2201240/v1

Thomas, H., Broeck, L., Spurney, R., Sozzani, R., & Frank, M. (2022). Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation. PLANT CELL, 34(1), 535–556. https://doi.org/10.1093/plcell/koab246

Broeck, L. V., Spurney, R. J., Fisher, A. P., Schwartz, M., Clark, N. M., Nguyen, T. T., … Sozzani, R. (2021). A hybrid model connecting regulatory interactions with stem cell divisions in the root. Quantitative Plant Biology, 2. https://doi.org/10.1017/qpb.2021.1

Kim, S. B., Van den Broeck, L., Karre, S., Choi, H., Christensen, S. A., Wang, G. F., … Balint‐Kurti, P. (2021). Analysis of the transcriptomic, metabolomic, and gene regulatory responses to
            <i>Puccinia sorghi
            in maize. Molecular Plant Pathology, 22(4), 465–479. https://doi.org/10.1111/mpp.13040

Schwartz, M. F., Peters, R., Hunt, A. M., Abdul-Matin, A.-K., Broeck, L., & Sozzani, R. (2021). [Review of Divide and Conquer: The Initiation and Proliferation of Meristems]. CRITICAL REVIEWS IN PLANT SCIENCES, 40(2), 147–156. https://doi.org/10.1080/07352689.2021.1915228

Thomas, H., Broeck, L. V., Spurney, R., Sozzani, R., & Frank, M. (2021, February 27). Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation (Vol. 2). Vol. 2. https://doi.org/10.1101/2021.02.26.433082

Franchini, E., Beretta, V. M., Din, I. U., Lacchini, E., Broeck, L. V., Sozzani, R., … Kater, M. M. (2021, May 3). The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice (Vol. 5). Vol. 5. https://doi.org/10.1101/2021.05.03.442460

Krishnamoorthy, S., Schwartz, M. F., Broeck, L. V., Hunt, A., Horn, T. J., & Sozzani, R. (2021). Tissue Regeneration with Hydrogel Encapsulation: A Review of Developments in Plants and Animals. BioDesign Research. https://doi.org/10.34133/2021/9890319

Doydora, S., Gatiboni, L., Grieger, K., Hesterberg, D., Jones, J. L., McLamore, E. S., … Duckworth, O. W. (2020). Accessing Legacy Phosphorus in Soils. Soil Systems, 4(4), 74. https://doi.org/10.3390/soilsystems4040074

Van den Broeck, L., Gordon, M., Inzé, D., Williams, C., & Sozzani, R. (2020). Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling. Frontiers in Genetics, 11. https://doi.org/10.3389/fgene.2020.00457

Clark, N. M., Van den Broeck, L., Guichard, M., Stager, A., Tanner, H. G., Blilou, I., … Sozzani, R. (2020). Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big. Annual Review of Plant Biology, 71(1), 789–816. https://doi.org/10.1146/annurev-arplant-050718-100038

Clark, N. M., Fisher, A. P., Berckmans, B., Van den Broeck, L., Nelson, E. C., Nguyen, T. T., … Sozzani, R. (2020). Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division. Proceedings of the National Academy of Sciences, 117(26), 15332–15342. https://doi.org/10.1073/pnas.2002166117

Spurney, R. J., Broeck, L., Clark, N. M., Fisher, A. P., Balaguer, M. A. de L., & Sozzani, R. (2020). tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks. PLANT JOURNAL, 101(3), 716–730. https://doi.org/10.1111/tpj.14558

N, N., Broeck L, V., S, Z., Cotte B, M, D., K, G., … I, D. S. (2018). Early mannitol-triggered changes in the Arabidopsis leaf (phospho)proteome reveal growth regulators. Journal of Experimental Botany, 8. https://doi.org/10.1093/jxb/ery261

Dubois, M., Broeck L Van, & Inzé, D. (2018). The Pivotal Role of Ethylene in Plant Growth. Trends in Plant Science, 4. https://doi.org/10.1016/j.tplants.2018.01.003

E-MTAB-6205 - The expression profiles of 31 transcription factors in wild-type Col-0 plants upon mild osmotic stress, including 10 time points and different leaf tissues [Data set]. (2017). Retrieved from https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6205

E-MTAB-6209 - The expression profiles of 30 transcription factors in 17 inducible gain-of-function lines after activation of overexpression, including 5 time points [Data set]. (2017). Retrieved from https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6209

Broeck, L. V., Dubois, M., Vermeersch, M., Storme, V., Matsui, M., & Inzé, D. (2017). From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Molecular Systems Biology, 13(12), 961. https://doi.org/10.15252/msb.20177840

Time of day determines Arabidopsis transcriptome and growth dynamics under mild drought. (2017). Plant, Cell & Environment, 2. https://doi.org/10.1111/pce.12809

RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation. (2016). Journal of Experimental Botany, 8. https://doi.org/10.1093/jxb/erw281

The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis. (2015). Plant Physiology, 9. https://doi.org/10.1104/pp.15.00335