Louis-Marie Bobay

Torrance, E. L., Burton, C., Diop, A., & Bobay, L.-M. (2024). Evolution of homologous recombination rates across bacteria. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.2316302121

Diop, A., & Bobay, L.-M. (2024, May 9). Introgression impacts the evolution of bacteria, but species borders are rarely fuzzy. https://doi.org/10.1101/2024.05.09.593304

Benlaïfaoui, M., Richard, C., Diop, A., Naimi, S., Belkaid, W., Bernet, E., … Diop, K. (2023). Tractidigestivibacter montrealensis</i> sp. nov., a new member of human gut microbiota isolated from a healthy volunteer. FEMS Microbiology Letters, 370. https://doi.org/10.1093/femsle/fnad058

Martinez-Hernandez, F., Diop, A., Garcia-Heredia, I., Bobay, L.-M., & Martinez-Garcia, M. (2022). Correction to: Unexpected myriad of co-occurring viral strains and species in one of the most abundant and microdiverse viruses on Earth. The ISME Journal, 16(4), 1199–1199. https://doi.org/10.1038/s41396-021-01182-8

Diop, A., Torrance, E. L., Stott, C. M., & Bobay, L.-M. (2022). Gene flow and introgression are pervasive forces shaping the evolution of bacterial species. Genome Biology, 23(1). https://doi.org/10.1186/s13059-022-02809-5

Ligaba-Osena, A., Salehin, M., Numan, M., Wang, X., Choi, S.-C., Jima, D., … Guo, W. (2022). Genome-wide transcriptome analysis of the orphan crop tef (Eragrostis tef (Zucc.) Trotter) under long-term low calcium stress. Scientific Reports, 12(1). https://doi.org/10.1038/s41598-022-23844-z

Martinez-Hernandez, F., Diop, A., Garcia-Heredia, I., Bobay, L.-M., & Martinez-Garcia, M. (2022). Unexpected myriad of co-occurring viral strains and species in one of the most abundant and microdiverse viruses on Earth. The ISME Journal, 16(4), 1025–1035. https://doi.org/10.1038/s41396-021-01150-2

Buton, A., & Bobay, L.-M. (2021). Evolution of Chi motifs in Proteobacteria. G3 Genes|Genomes|Genetics, 11(1), 1–7. https://doi.org/10.1093/g3journal/jkaa054

Harris, C. D., Torrance, E. L., Raymann, K., & Bobay, L.-M. (2020). CoreCruncher</i>: Fast and Robust Construction of Core Genomes in Large Prokaryotic Data Sets. Molecular Biology and Evolution, 38(2), 727–734. https://doi.org/10.1093/molbev/msaa224

Bobay, L.-M. (2020). CoreSimul: a forward-in-time simulator of genome evolution for prokaryotes modeling homologous recombination. BMC Bioinformatics, 21(1). https://doi.org/10.1186/s12859-020-03619-x

Buton, A., & Bobay, L.-M. (2020, August 14). Evolution of Chi motifs in Proteobacteria (Vol. 8). Vol. 8. https://doi.org/10.1101/2020.08.13.249359

Stott, C. M., & Bobay, L.-M. (2020, December 2). Impact of homologous recombination on core genome phylogenies. https://doi.org/10.21203/rs.3.rs-29898/v2

Stott, C. M., & Bobay, L.-M. (2020, June 8). Impact of homologous recombination on core genome phylogenies. https://doi.org/10.21203/rs.3.rs-29898/v1

Stott, C. M., & Bobay, L.-M. (2020). Impact of homologous recombination on core genome phylogenies. BMC Genomics, 21(1). https://doi.org/10.1186/s12864-020-07262-x

Bobay, L.-M., O’Donnell, A. C., & Ochman, H. (2020). Recombination events are concentrated in the spike protein region of Betacoronaviruses. PLOS Genetics, 16(12), e1009272. https://doi.org/10.1371/journal.pgen.1009272

Bobay, L.-M., Wissel, E. F., & Raymann, K. (2020). Strain Structure and Dynamics Revealed by Targeted Deep Sequencing of the Honey Bee Gut Microbiome. MSphere, 5(4). https://doi.org/10.1128/msphere.00694-20

Bobay, L.-M. (2020). The Prokaryotic Species Concept and Challenges. https://doi.org/10.1007/978-3-030-38281-0_2

Bobay, L.-M., & Raymann, K. (2019). Population Genetics of Host-Associated Microbiomes. Current Molecular Biology Reports, 5(3), 128–139. https://doi.org/10.1007/s40610-019-00122-y

Bobay, L.-M., & Ochman, H. (2018). Biological species in the viral world. Proceedings of the National Academy of Sciences, 115(23), 6040–6045. https://doi.org/10.1073/pnas.1717593115

Bobay, L.-M., Ellis, B. S.-H., & Ochman, H. (2018). ConSpeciFix</i>: classifying prokaryotic species based on gene flow. Bioinformatics, 34(21), 3738–3740. https://doi.org/10.1093/bioinformatics/bty400

Bobay, L.-M., & Ochman, H. (2018). Factors driving effective population size and pan-genome evolution in bacteria. BMC Evolutionary Biology, 18(1). https://doi.org/10.1186/s12862-018-1272-4

Bobay, L.-M. (2018). Heredity: A Very Short Introduction. Journal of Mammalogy, 9. https://doi.org/10.1093/jmammal/gyy106

Raymann, K., Bobay, L. M., & Moran, N. A. (2017). Antibiotics reduce genetic diversity of core species in the honeybee gut microbiome. Molecular Ecology, 27(8), 2057–2066. https://doi.org/10.1111/mec.14434

Bobay, L.-M., & Ochman, H. (2017). Biological Species Are Universal across Life’s Domains. Genome Biology and Evolution, 9(3), 491–501. https://doi.org/10.1093/gbe/evx026

Bobay, L.-M., & Ochman, H. (2017). Impact of Recombination on the Base Composition of Bacteria and Archaea. Molecular Biology and Evolution, 34(10), 2627–2636. https://doi.org/10.1093/molbev/msx189

Bobay, L.-M., & Ochman, H. (2017). The Evolution of Bacterial Genome Architecture. Frontiers in Genetics, 8. https://doi.org/10.3389/fgene.2017.00072

Wexler, A. G., Bao, Y., Whitney, J. C., Bobay, L.-M., Xavier, J. B., Schofield, W. B., … Goodman, A. L. (2016). Human symbionts inject and neutralize antibacterial toxins to persist in the gut. Proceedings of the National Academy of Sciences, 113(13), 3639–3644. https://doi.org/10.1073/pnas.1525637113

Douam, F., Bobay, L.-M., Maurin, G., Fresquet, J., Calland, N., Maisse, C., … Lavillette, D. (2016). Specialization of Hepatitis C Virus Envelope Glycoproteins for B Lymphocytes in Chronically Infected Patients. Journal of Virology, 90(2), 992–1008. https://doi.org/10.1128/jvi.02516-15

Bobay, L.-M., Traverse, C. C., & Ochman, H. (2015). Impermanence of bacterial clones. Proceedings of the National Academy of Sciences, 112(29), 8893–8900. https://doi.org/10.1073/pnas.1501724112

Henry, M., Bobay, L.-M., Chevallereau, A., Saussereau, E., Ceyssens, P.-J., & Debarbieux, L. (2015). The Search for Therapeutic Bacteriophages Uncovers One New Subfamily and Two New Genera of Pseudomonas-Infecting Myoviridae. PLOS ONE, 10(1), e0117163. https://doi.org/10.1371/journal.pone.0117163

Bobay, L.-M., Touchon, M., & Rocha, E. P. C. (2014). Pervasive domestication of defective prophages by bacteria. Proceedings of the National Academy of Sciences, 111(33), 12127–12132. https://doi.org/10.1073/pnas.1405336111

Touchon, M., Bobay, L.-M., & Rocha, E. P. C. (2014). The chromosomal accommodation and domestication of mobile genetic elements. Current Opinion in Microbiology, 22, 22–29. https://doi.org/10.1016/j.mib.2014.09.010

Raymann, K., Bobay, L.-M., Doak, T. G., Lynch, M., & Gribaldo, S. (2013). A Genomic Survey of Reb Homologs Suggests Widespread Occurrence of R-Bodies in Proteobacteria. G3 Genes|Genomes|Genetics, 3(3), 505–516. https://doi.org/10.1534/g3.112.005231

Bobay, L.-M., Touchon, M., & Rocha, E. P. C. (2013). Manipulating or Superseding Host Recombination Functions: A Dilemma That Shapes Phage Evolvability. PLoS Genetics, 9(9), e1003825. https://doi.org/10.1371/journal.pgen.1003825

Deghorain, M., Bobay, L.-M., Smeesters, P. R., Bousbata, S., Vermeersch, M., Perez-Morga, D., … Van Melderen, L. (2012). Characterization of Novel Phages Isolated in Coagulase-Negative Staphylococci Reveals Evolutionary Relationships with Staphylococcus aureus Phages. Journal of Bacteriology, 194(21), 5829–5839. https://doi.org/10.1128/jb.01085-12

Bobay, L.-M., Rocha, E. P. C., & Touchon, M. (2012). The Adaptation of Temperate Bacteriophages to Their Host Genomes. Molecular Biology and Evolution, 30(4), 737–751. https://doi.org/10.1093/molbev/mss279

Lynch, M., Bobay, L.-M., Catania, F., Gout, J.-F., & Rho, M. (2011). The Repatterning of Eukaryotic Genomes by Random Genetic Drift. Annual Review of Genomics and Human Genetics, 12(1), 347–366. https://doi.org/10.1146/annurev-genom-082410-101412

Douam, F., Bobay, L.-M., & Martin, O. (2010). L'évolution c'est tout simple! Paris: Vuibert.