Linda Hanley-Bowdoin

Dye, A. E., Muga, B., Mwangi, J., Hoyer, J. S., Ly, V., Rosado, Y., … Ascencio-Ibáñez, J. T. (2023). Cassava begomovirus species diversity changes during plant vegetative cycles. Frontiers in Microbiology, 14. https://doi.org/10.3389/fmicb.2023.1163566

Kennedy, G. G., Sharpee, W., Jacobson, A. L., Wambugu, M., Mware, B., & Hanley-Bowdoin, L. (2023). Genome segment ratios change during whitefly transmission of two bipartite cassava mosaic begomoviruses. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-37278-8

Rajabu, C. A., Dallas, M. M., Chiunga, E., De Leon, L., Ateka, E. M., Tairo, F., … Hanley-Bowdoin, L. (2023). SEGS-1 a cassava genomic sequence increases the severity of African cassava mosaic virus infection in <i>Arabidopsis</i> thaliana. FRONTIERS IN PLANT SCIENCE, 14. https://doi.org/10.3389/fpls.2023.1250105

Aimone, C. D., Hoyer, J. S., Dye, A. E., Deppong, D. O., Duffy, S., Carbone, I., & Hanley-Bowdoin, L. (2022). An experimental strategy for preparing circular ssDNA virus genomes for next-generation sequencing. JOURNAL OF VIROLOGICAL METHODS, 300. https://doi.org/10.1016/j.jviromet.2021.114405

Peng, Y., Dallas, M. M., Ascencio-Ibanez, J. T., Hoyer, J. S., Legg, J., Hanley-Bowdoin, L., … Yin, H. (2022). Early detection of plant virus infection using multispectral imaging and spatial-spectral machine learning. SCIENTIFIC REPORTS, 12(1). https://doi.org/10.1038/s41598-022-06372-8

McLaughlin, A. A., Hanley-Bowdoin, L., Kennedy, G. G., & Jacobson, A. L. (2022). Vector acquisition and co-inoculation of two plant viruses influences transmission, infection, and replication in new hosts. SCIENTIFIC REPORTS, 12(1). https://doi.org/10.1038/s41598-022-24880-5

Aimone, C. D., De Leon, L., Dallas, M. M., Ndunguru, J., Ascencio-Ibanez, J. T., & Hanley-Bowdoin, L. (2021). A New Type of Satellite Associated with Cassava Mosaic Begomoviruses. JOURNAL OF VIROLOGY, 95(21). https://doi.org/10.1128/JVI.00432-21

Wang, Y., Gong, Q., Wu, Y., Huang, F., Ismayil, A., Zhang, D., … Liu, Y. (2021). A calmodulin-binding transcription factor links calcium signaling to antiviral RNAi defense in plants. CELL HOST & MICROBE, 29(9), 1393-+. https://doi.org/10.1016/j.chom.2021.07.003

Mickelson-Young, L., Wear, E. E., Song, J., Zynda, G. J., Hanley-Bowdoin, L., & Thompson, W. F. (2021). A protocol for genome-wide analysis of DNA replication timing in intact root tips. Methods in Molecular Biology Series.

Borges, F., Donoghue, M. T. A., LeBlanc, C., Wear, E. E., Tanurdzic, M., Berube, B., … Martienssen, R. A. (2021). Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. CURRENT BIOLOGY, 31(3), 591-+. https://doi.org/10.1016/j.cub.2020.10.098

Aimone, C. D., Lavington, E., Hoyer, J. S., Deppong, D. O., Mickelson-Young, L., Jacobson, A., … Duffy, S. (2021). Population diversity of cassava mosaic begomoviruses increases over the course of serial vegetative propagation. Journal of General Virology, 102(7). https://doi.org/10.1099/jgv.0.001622

Shen, W., & Hanley-Bowdoin, L. (2021). SnRK1: a versatile plant protein kinase that limits geminivirus infection. CURRENT OPINION IN VIROLOGY, 47, 18–24. https://doi.org/10.1016/j.coviro.2020.12.002

He, Y.-Z., Wang, Y.-M., Yin, T.-Y., Fiallo-Oliv, E., Liu, Y.-Q., Hanley-Bowdoin, L., & Wang, X.-W. (2020). A plant DNA virus replicates in the salivary glands of its insect vector via recruitment of host DNA synthesis machinery. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(29), 16928–16937. https://doi.org/10.1073/pnas.1820132117

Wheeler, E., Brooks, A. M., Concia, L., Vera, D. L., Wear, E. E., LeBlanc, C., … Hanley-Bowdoin, L. (2020). Arabidopsis DNA Replication Initiates in Intergenic, AT-Rich Open Chromatin(1)([OPEN]). PLANT PHYSIOLOGY, 183(1), 206–220. https://doi.org/10.1104/pp.19.01520

Wear, E. E., Song, J., Zynda, G. J., Mickelson-Young, L., LeBlanc, C., Lee, T.-J., … Thompson, W. F. (2020). Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots. PLOS GENETICS, 16(10). https://doi.org/10.1371/journal.pgen.1008623

Ismayil, A., Yang, M., Haxim, Y., Wang, Y., Li, J., Han, L., … Liu, Y. (2020). Cotton leaf curl Multan virus beta C1 Protein Induces Autophagy by Disrupting the Interaction of Autophagy-Related Protein 3 with Glyceraldehyde-3-Phosphate Dehydrogenases([OPEN]). PLANT CELL, 32(4), 1124–1135. https://doi.org/10.1105/tpc.19.00759

Hoyer, J. S., Fondong, V. N., Dallas, M. M., Aimone, C. D., Deppong, D. O., Duffy, S., & Hanley-Bowdoin, L. (2020). Deeply Sequenced Infectious Clones of Key Cassava Begomovirus Isolates from Cameroon. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(46). https://doi.org/10.1128/MRA.00802-20

Wang, Y., Wu, Y., Gong, Q., Ismayil, A., Yuan, Y., Lian, B., … Liu, Y. (2019). Geminiviral V2 Protein Suppresses Transcriptional Gene Silencing through Interaction with AGO4. JOURNAL OF VIROLOGY, 93(6). https://doi.org/10.1128/JVI.01675-18

Mbewe, W., Hanley-Bowdoin, L., Ndunguru, J., & Duffy, S. (2018). Cassava viruses – host jumps, virus recombination, spread in plant material. In A. Records & J. Ristaino (Eds.), Emerging Plant Diseases and Global Food Security. St. Paul, MN: APS Press.

Turpin, Z. M., Vera, D. L., Savadel, S. D., Lung, P.-Y., Wear, E. E., Mickelson-Young, L., … Bass, H. W. (2018, October). Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L). DATA IN BRIEF, Vol. 20, pp. 358–363. https://doi.org/10.1016/j.dib.2018.08.015

Ismayil, A., Haxim, Y., Wang, Y., Li, H., Qian, L., Han, T., … Liu, Y. (2018). Cotton Leaf Curl Multan virus C4 protein suppresses both transcriptional and post-transcriptional gene silencing by interacting with SAM synthetase. PLOS Pathogens, 14(8), e1007282. https://doi.org/10.1371/journal.ppat.1007282

Caldo, K. M. P., Shen, W., Xu, Y., Hanley-Bowdoin, L., Chen, G., Weselake, R. J., & Lemieux, M. J. (2018). Diacylglycerol acyltransferase 1 is activated by phosphatidate and inhibited by SnRK1-catalyzed phosphorylation. PLANT JOURNAL, 96(2), 287–299. https://doi.org/10.1111/tpj.14029

Concia, L., Brooks, A. M., Wheeler, E., Zynda, G. J., Wear, E. E., LeBlanc, C., … Hanley-Bowdoin, L. (2018). Genome-Wide Analysis of the Arabidopsis Replication Timing Program. PLANT PHYSIOLOGY, 176(3), 2166–2185. https://doi.org/10.1104/pp.17.01537

Rajabu, C. A., Kennedy, G. G., Ndunguru, J., Ateka, E. M., Tairo, F., Hanley-Bowdoin, L., & Ascencio-Ibanez, J. T. (2018). Lanai: A small, fast growing tomato variety is an excellent model system for studying geminiviruses. JOURNAL OF VIROLOGICAL METHODS, 256, 89–99. https://doi.org/10.1016/j.jviromet.2018.03.002

Shen, W., Bobay, B. G., Greeley, L. A., Reyes, M. I., Rajabu, C. A., Blackburn, R. K., … Hanley-Bowdoin, L. (2018). Sucrose Nonfermenting 1-Related Protein Kinase 1 Phosphorylates a Geminivirus Rep Protein to Impair Viral Replication and Infection. PLANT PHYSIOLOGY, 178(1), 372–389. https://doi.org/10.1104/pp.18.00268

Reyes, M. I., Flores-Vergara, M. A., Guerra-Peraza, O., Rajabu, C., Desai, J., Hiromoto-Ruiz, Y. H., … Robertson, D. (2017). A VIGS screen identifies immunity in the Arabidopsis Pla-1 accession to viruses in two different genera of the Geminiviridae. PLANT JOURNAL, 92(5), 796–807. https://doi.org/10.1111/tpj.13716

Michelmore, R., Coaker, G., Bart, R., Beattie, G., Bent, A., Bruce, T., … Walsh, J. (2017). Foundational and Translational Research Opportunities to Improve Plant Health. Molecular Plant-Microbe Interactions, 30(7), 515–516. https://doi.org/10.1094/mpmi-01-17-0010-cr

Wear, E. E., Song, J., Zynda, G. J., LeBlanc, C., Lee, T.-J., Mickelson-Young, L., … Thompson, W. F. (2017). Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips. PLANT CELL, 29(9), 2126–2149. https://doi.org/10.1105/tpc.17.00037

Zynda, G. J., Song, J., Concia, L., Wear, E. E., Hanley-Bowdoin, L., Thompson, W. F., & Vaughn, M. W. (2017). Repliscan: a tool for classifying replication timing regions. BMC BIOINFORMATICS, 18, 1–14. https://doi.org/10.1186/s12859-017-1774-x

Mickelson-Young, L., Wear, E., Mulvaney, P., Lee, T.-J., Szymanski, E. S., Allen, G., … Thompson, W. (2016). A flow cytometric method for estimating S-phase duration in plants. JOURNAL OF EXPERIMENTAL BOTANY, 67(21), 6077–6087. https://doi.org/10.1093/jxb/erw367

Wear, E. E., Concia, L., Brooks, A. M., Markham, E. A., Lee, T.-J., Allen, G. C., … Hanley-Bowdoin, L. (2016). Isolation of Plant Nuclei at Defined Cell Cycle Stages Using EdU Labeling and Flow Cytometry. In Methods in Molecular Biology (pp. 69–86). https://doi.org/10.1007/978-1-4939-3142-2_6

Ndunguru, J., De Leon, L., Doyle, C. D., Sseruwagi, P., Plata, G., Legg, J. P., … Hanley-Bowdoin, L. (2016). Two Novel DNAs That Enhance Symptoms and Overcome CMD2 Resistance to Cassava Mosaic Disease. JOURNAL OF VIROLOGY, 90(8), 4160–4173. https://doi.org/10.1128/jvi.02834-15

Bass, H. W., Hoffman, G. G., Lee, T.-J., Wear, E. E., Joseph, S. R., Allen, G. C., … Thompson, W. F. (2015). Defining multiple, distinct, and shared spatiotemporal patterns of DNA replication and endoreduplication from 3D image analysis of developing maize (Zea mays L.) root tip nuclei. PLANT MOLECULAR BIOLOGY, 89(4-5), 339–351. https://doi.org/10.1007/s11103-015-0364-4

Bass, H. W., Wear, E. E., Lee, T.-J., Hoffman, G. G., Gumber, H. K., Allen, G. C., … Hanley-Bowdoin, L. (2014). [Review of A maize root tip system to study DNA replication programmes in somatic and endocycling nuclei during plant development]. JOURNAL OF EXPERIMENTAL BOTANY, 65(10), 2747–2756. https://doi.org/10.1093/jxb/ert470

Pascuzzi, P. E., Flores-Vergara, M. A., Lee, T.-J., Sosinski, B., Vaughn, M. W., Hanley-Bowdoin, L., … Allen, G. C. (2014). In Vivo Mapping of Arabidopsis Scaffold/Matrix Attachment Regions Reveals Link to Nucleosome-Disfavoring Poly(dA:dT) Tracts. PLANT CELL, 26(1), 102–120. https://doi.org/10.1105/tpc.113.121194

Shen, W., Dallas, M. B., Goshe, M. B., & Hanley-Bowdoin, L. (2014). SnRK1 Phosphorylation of AL2 Delays Cabbage Leaf Curl Virus Infection in Arabidopsis. JOURNAL OF VIROLOGY, 88(18), 10598–10612. https://doi.org/10.1128/jvi.00761-14

Hanley-Bowdoin, L., Bejarano, E. R., Robertson, D., & Mansoor, S. (2013). [Review of Geminiviruses: masters at redirecting and reprogramming plant processes]. NATURE REVIEWS MICROBIOLOGY, 11(11), 777–788. https://doi.org/10.1038/nrmicro3117

Reyes, M. I., Nash, T. E., Dallas, M. M., Ascencio-Ibanez, J. T., & Hanley-Bowdoin, L. (2013). Peptide Aptamers That Bind to Geminivirus Replication Proteins Confer a Resistance Phenotype to Tomato Yellow Leaf Curl Virus and Tomato Mottle Virus Infection in Tomato. JOURNAL OF VIROLOGY, 87(17), 9691–9706. https://doi.org/10.1128/jvi.01095-13

Nash, T. E., Dallas, M. B., Reyes, M. I., Buhrman, G. K., Ascencio-Ibanez, J. T., & Hanley-Bowdoin, L. (2011). Functional Analysis of a Novel Motif Conserved across Geminivirus Rep Proteins. JOURNAL OF VIROLOGY, 85(3), 1182–1192. https://doi.org/10.1128/jvi.02143-10

Sanchez-Duran, M. A., Dallas, M. B., Ascencio-Ibanez, J. T., Reyes, M. I., Arroyo-Mateos, M., Ruiz-Albert, J., … Bejarano, E. R. (2011). Interaction between Geminivirus Replication Protein and the SUMO-Conjugating Enzyme Is Required for Viral Infection. JOURNAL OF VIROLOGY, 85(19), 9789–9800. https://doi.org/10.1128/jvi.02566-10

Shen, Q., Liu, Z., Song, F., Xie, Q., Hanley-Bowdoin, L., & Zhou, X. (2011). Tomato SlSnRK1 Protein Interacts with and Phosphorylates beta C1, a Pathogenesis Protein Encoded by a Geminivirus beta-Satellite. PLANT PHYSIOLOGY, 157(3), 1394–1406. https://doi.org/10.1104/pp.111.184648

Lee, T.-J., Pascuzzi, P. E., Settlage, S. B., Shultz, R. W., Tanurdzic, M., Rabinowicz, P. D., … Thompson, W. F. (2010). Arabidopsis thaliana Chromosome 4 Replicates in Two Phases That Correlate with Chromatin State. PLoS Genetics, 6(6), e1000982. https://doi.org/10.1371/journal.pgen.1000982

Sozzani, R., Maggio, C., Giordo, R., Umana, E., Ascencio-Ibañez, J. T., Hanley-Bowdoin, L., … Albani, D. (2010). The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis. Plant Molecular Biology, 72(4-5), 381–395. https://doi.org/10.1007/s11103-009-9577-8

Shen, W., Reyes, M. I., & Hanley-Bowdoin, L. (2009). Arabidopsis Protein Kinases GRIK1 and GRIK2 Specifically Activate SnRK1 by Phosphorylating Its Activation Loop. PLANT PHYSIOLOGY, 150(2), 996–1005. https://doi.org/10.1104/pp.108.132787

Shultz, R. W., Lee, T.-J., Allen, G. C., Thompson, W. F., & Hanley-Bowdoin, L. (2009). Dynamic Localization of the DNA Replication Proteins MCM5 and MCM7 in Plants. PLANT PHYSIOLOGY, 150(2), 658–669. https://doi.org/10.1104/pp.109.136614

Lopez-Ochoa, L., Nash, T. E., Ramirez-Prado, J., & Hanley-Bowdoin, L. (2009). Isolation of Peptide Aptamers to Target Protein Function. In Methods in Molecular Biology (pp. 333–360). https://doi.org/10.1007/978-1-59745-557-2_19

Ascencio-Ibanez, J. T., Sozzani, R., Lee, T. J., Chu, T. M., Wolfinger, R. D., Cella, R., & Hanley-Bowdoin, L. (2008). [Review of Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection]. Plant Physiology, 148(1), 436–454.

Jordan, C. V., Shen, W., Hanley-Bowdoin, L. K., & Robertson, D. (2007). Geminivirus-induced gene silencing of the tobacco retinoblastoma-related gene results in cell death and altered development. PLANT MOLECULAR BIOLOGY, 65(1-2), 163–175. https://doi.org/10.1007/s11103-007-9206-3

Shultz, R. W., Tatineni, V. M., Hanley-Bowdoin, L., & Thompson, W. F. (2007). [Review of Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice(1[W][OA])]. Plant Physiology, 144(4), 1697–1714.

Arguello-Astorga, G., Ascencio-Ibanez, J. T., Dallas, M. B., Orozco, B. M., & Hanley-Bowdoin, L. (2007). High-frequency reversion of geminivirus replication protein mutants during infection. JOURNAL OF VIROLOGY, 81(20), 11005–11015. https://doi.org/10.1128/JVI.00925-07

Shen, W., & Hanley-Bowdoin, L. (2006). Geminivirus infection up-regulates the expression of two Arabidopsis protein kinases related to yeast SNF1-and mammalian AMPK-activating kinases. PLANT PHYSIOLOGY, 142(4), 1642–1655. https://doi.org/10.1104/pp.106.088476

Lopez-Ochoa, L., Ramirez-Prado, J., & Hanley-Bowdoin, L. (2006). Peptide aptamers that bind to a geminivirus replication protein interfere with viral replication in plant cells. JOURNAL OF VIROLOGY, 80(12), 5841–5853. https://doi.org/10.1128/JVI.02698-05

Shultz, R. W., Settlage, S. B., Hanley-Bowdoin, L., & Thompson, W. F. (2005). A trichloroacetic acid-acetone method greatly reduces infrared autofluorescence of protein extracts from plant tissue. PLANT MOLECULAR BIOLOGY REPORTER, 23(4), 405–409. https://doi.org/10.1007/BF02788888

Settlage, S. B., See, R. G., & Hanley-Bowdoin, L. (2005). Geminivirus C3 protein: Replication enhancement and protein interactions. JOURNAL OF VIROLOGY, 79(15), 9885–9895. https://doi.org/10.1128/jvi.79.15.9885-9895.2005

Arguello-Astorga, G., Lopez-Ochoa, L., Kong, L. J., Orozco, B. M., Settlage, S. B., & Hanley-Bowdoin, L. (2004). A novel motif in geminivirus replication proteins interacts with the plant retinoblastoma-related protein. JOURNAL OF VIROLOGY, 78(9), 4817–4826. https://doi.org/10.1128/JVI.78.9.4817-4826.2004

Lee, T. J., Shultz, R. W., Hanley-Bowdoin, L., & Thompson, W. F. (2004). Establishment of rapidly proliferating rice cell suspension culture and its characterization by fluorescence-activated cell sorting analysis. PLANT MOLECULAR BIOLOGY REPORTER, 22(3), 259–267. https://doi.org/10.1007/BF02773136

Hanley-Bowdoin, L., Orozco, B. M., Kong, L. J., & Gruissem, W. (2004). Geminivirus resistant transgenic plants. Washington, DC: U.S. Patent and Trademark Office.

Hanley-Bowdoin, L., & Settlage, S. (2004). Geminivirus resistant transgenic plants expressing a mutant geminivirus AL3/C3 coding sequence. Washington, DC: U.S. Patent and Trademark Office.

Castillo, A. G., Kong, L. J., Hanley-Bowdoin, L., & Bejarano, E. R. (2004). Interaction between a geminivirus replication protein and the plant sumoylation system. JOURNAL OF VIROLOGY, 78(6), 2758–2769. https://doi.org/10.1128/JVI.78.6.2758-2769.2004

Hanley-Bowdoin, L., Settlage, S. B., & Robertson, D. (2004). [Review of Reprogramming plant gene expression: a prerequisite to geminivirus DNA replication]. MOLECULAR PLANT PATHOLOGY, 5(2), 149–156. https://doi.org/10.1111/J.1364-3703.2004.00214.X

Kong, L. J., & Hanley-Bowdoin, L. (2002). A geminivirus replication protein interacts with a protein kinase and a motor protein that display different expression patterns during plant development and infection. PLANT CELL, 14(8), 1817–1832. https://doi.org/10.1105/tpc.003681

Nagara, S., Hanley-Bowdoin, L., & Robertson, D. (2002). Host DNA replication is induced by geminivirus infection of differentiated plant cells. PLANT CELL, 14(12), 2995–3007. https://doi.org/10.1105/tpc.005777

Egelkrout, E. M., Mariconti, L., Settlage, S. B., Cella, R., Robertson, D., & Hanley-Bowdoin, L. (2002). Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development. PLANT CELL, 14(12), 3225–3236. https://doi.org/10.1105/tpc.006403

Settlage, S. B., Miller, A. B., Gruissem, W., & Hanley-Bowdoin, L. (2001). Dual interaction of a geminivirus replication accessory factor with a viral replication protein and a plant cell cycle regulator. VIROLOGY, 279(2), 570–576. https://doi.org/10.1006/viro.2000.0719

Egelkrout, E. M., Robertson, D., & Hanley-Bowdoin, L. (2001). Proliferating cell nuclear antigen transcription is repressed through an E2F consensus element and activated by geminivirus infection in mature leaves. PLANT CELL, 13(6), 1437–1452. https://doi.org/10.1105/tpc.13.6.1437

Peele, C., Jordan, C. V., Muangsan, N., Turnage, M., Egelkrout, E., Eagle, P., … Robertson, D. (2001). Silencing of a meristematic gene using geminivirus-derived vectors. PLANT JOURNAL, 27(4), 357–366. https://doi.org/10.1046/j.1365-313x.2001.01080.x

Kong, L. J., Orozco, B. M., Roe, J. L., Nagar, S., Ou, S., Feiler, H. S., … Hanley-Bowdoin, L. (2000). A geminivirus replication protein interacts with the retinoblastoma protein through a novel domain to determine symptoms and tissue specificity of infection in plants. EMBO JOURNAL, 19(13), 3485–3495. https://doi.org/10.1093/emboj/19.13.3485

Bass, H. W., Nagar, S., Hanley-Bowdoin, L., & Robertson, D. (2000). Chromosome condensation induced by geminivirus infection of mature plant cells. Journal of Cell Science, 113(7), 1149–1160.

Hanley-Bowdoin, L., Settlage, S. B., Orozco, B. M., Nagar, S., & Robertson, D. (2000). Geminiviruses - Models for plant DNA replication, transcription and cell cycle regulation ([correction to] vol 35, pg 105, 2000). Critical Reviews in Biochemistry and Molecular Biology, 35(4), U4.

Hanley-Bowdoin, L., Settlage, S. B., Orozco, B. M., Nagar, S., & Robertson, D. (2000). Geminiviruses: Models for plant DNA replication, transcription, and cell cycle regulation. Critical Reviews in Biochemistry and Molecular Biology, 35(2), 105–140.

Orozco, B. M., Kong, L. J., Batts, L. A., Elledge, S., & Hanley-Bowdoin, L. (2000). The multifunctional character of a geminivirus replication protein is reflected by its complex oligomerization properties. JOURNAL OF BIOLOGICAL CHEMISTRY, 275(9), 6114–6122. https://doi.org/10.1074/jbc.275.9.6114

Hanley-Bowdoin, L., Settlage, S. B., Orozco, B. M., Nagar, S., & Robertson, D. (1999). Geminiviruses: Models for plant DNA replication, transcription, and cell cycle regulation {review}. Critical Reviews in Plant Sciences, 18(1), 71–106. https://doi.org/10.1080/07352689991309162

Orozco, B. M., & Hanley-Bowdoin, L. (1998). Conserved sequence and structural motifs contribute to the DNA binding and cleavage activities of a geminivirus replication protein. JOURNAL OF BIOLOGICAL CHEMISTRY, 273(38), 24448–24456. https://doi.org/10.1074/jbc.273.38.24448

Orozco, B. M., Gladfelter, H. J., Settlage, S. B., Eagle, P. A., Gentry, R. N., & Hanley-Bowdoin, L. (1998). Multiple cis elements contribute to geminivirus origin function. VIROLOGY, 242(2), 346–356. https://doi.org/10.1006/viro.1997.9013

Eagle, P. A., & Hanley-Bowdoin, L. K. (1997). CIS elements that contribute to geminivirus transcriptional regulation and the efficiency of DNA replication. Journal of Virology, 71(9), 6947–6955.

Orozco, B. M., Miller, A. B., Settlage, S. B., & Hanley-Bowdoin, L. (1997). Functional domains of a geminivirus replication protein. Journal of Biological Chemistry, 272(15), 9840–9846. https://doi.org/10.1074/jbc.272.15.9840

Ach, R. A., Durfee, T., Miller, A. B., Taranto, P., HanleyBowdoin, L., Zambryski, P. C., & Gruissem, W. (1997). RRB1 and RRB2 encode maize retinoblastoma-related proteins that interact with a plant D-type cyclin and geminivirus replication protein. MOLECULAR AND CELLULAR BIOLOGY, 17(9), 5077–5086. https://doi.org/10.1128/MCB.17.9.5077

Gladfelter, H. J., Eagle, P. A., Fontes, E. P. B., Batts, L., & Hanley-Bowdoin, L. (1997). Two domains of the AL1 protein mediate geminivirus origin recognition. VIROLOGY, 239(1), 186–197. https://doi.org/10.1006/viro.1997.8869

Orozco, B. M., & Hanley-Bowdoin, L. (1996). A DNA structure is required for geminivirus replication origin function. Journal of Virology, 70(1), 148–158. https://doi.org/10.1128/jvi.70.1.148-158.1996

Hanley-Bowdoin, L., Eagle, P. A., Orozco, B. M., Robertson, D., & Settlage, S. B. (1996). Geminivirus Replication. In G. Stacey, B. Mullin, & P. M. Gresshoff (Eds.), Biology of Plant-Microbe Interactions (pp. 287–292). St. Paul, MN: International Society of Molecular Plant-Microbe Interactions.

Settlage, S. B., Miller, A. B., & Hanley-Bowdoin, L. (1996). Interactions between geminivirus replication proteins. Journal of Virology, 70(10), 6790–6795. https://doi.org/10.1128/jvi.70.10.6790-6795.1996

Nagar, S., Pedersen, T. J., Carrick, K. M., Hanley-Bowdoin, L., & Robertson, D. (1995). A geminivirus induces expression of a host DNA synthesis protein in terminally differentiated plant cells. The Plant Cell, 7(6), 705–719. https://doi.org/10.1105/tpc.7.6.705

Eagle, P. A., Orozco, B. M., & Hanley-Bowdoin, L. (1994). A DNA sequence required for geminivirus replication also mediates transcriptional regulation. The Plant Cell, 6(8), 1157–1170. https://doi.org/10.1105/tpc.6.8.1157

Fontes, E. P., Gladfelter, H. J., Schaffer, R. L., Petty, I. T., & Hanley-Bowdoin, L. (1994). Geminivirus replication origins have a modular organization. The Plant Cell, 6(3), 405–416. https://doi.org/10.1105/tpc.6.3.405

Fontes, E. P. B., Eagle, P. A., Sipe, P., Luckow, V. A., & Hanley-Bowdoin, L. (1994). Interaction between a geminivirus replication protein and origin DNA is essential for viral replication. Journal of Biological Chemistry, 269, 8459–8465.

Pedersen, T. J., & Hanley-Bowdoin, L. (1994). Molecular Characterization of the AL3 Protein Encoded by a Bipartite Geminivirus. Virology, 202(2), 1070–1075. https://doi.org/10.1006/viro.1994.1442

Fontes, E. P., Luckow, V. A., & Hanley-Bowdoin, L. (1992). A geminivirus replication protein is a sequence-specific DNA binding protein. The Plant Cell, 4(5), 597–608. https://doi.org/10.1105/tpc.4.5.597

Hanley Bowdoin, L., & Hemenway, C. (1992). Transgenic plants expressing viral genes. In T. M. A. Wilson & J. W. Davies (Eds.), Genetic Engineering with Plant Viruses (pp. 251–295). CRC Press, Inc.

Hanley-Bowdoin, L., Elmer, J. S., & Rogers, S. G. (1990). Expression of functional replication protein from tomato golden mosaic virus in transgenic tobacco plants. Proceedings of the National Academy of Sciences, 87(4), 1446–1450. https://doi.org/10.1073/pnas.87.4.1446

Hanley-Bowdoin, L., Elmer, J. S., & Rogers, S. G. (1989). Functional expression of the leftward open reading frames of the A component of tomato golden mosaic virus in transgenic tobacco plants. The Plant Cell, 1(11), 1057–1067. https://doi.org/10.1105/tpc.1.11.1057

Hanley-Bowdoin, L., & Chua, N.-H. (1989). Transcriptional interaction between the promoters of the maize chloroplast genes which encode the β subunit of ATP synthase and the large subunit of ribulose 1,5-bisphosphate carboxylase. Molecular and General Genetics MGG, 215(2), 217–224. https://doi.org/10.1007/bf00339720

Lam, E., Hanley Bowdoin, L., & Chua, N. H. (1988). Characterization of a chloroplast sequence-specific DNA binding factor. Journal of Biological Chemistry, 263, 8288–8293.

Hanley-Bowdoin, L., & Chua, N.-H. (1988). Transcription of the wheat chloroplast gene that encodes the 32 kd polypeptide. Plant Molecular Biology, 10(4), 303–310. https://doi.org/10.1007/bf00029880

Hanley-Bowdoin, L., Elmer, J. S., & Rogers, S. G. (1988). Transient expression of heterologous RNAs using tomato golden mosaic virus. Nucleic Acids Research, 16(22), 10511–10528. https://doi.org/10.1093/nar/16.22.10511

Hanley-Bowdoin, L., & Chua, N.-H. (1987). Chloroplast promoters. Trends in Biochemical Sciences, 12, 67–70. https://doi.org/10.1016/0968-0004(87)90033-8

Orozco, E. M., Jr., Mullet, J. E., Hanley-Bowdoin, L., & Chua, N.-H. (1986). In vitro transcription of chloroplast protein genes. In Methods in Enzymology (pp. 232–253). https://doi.org/10.1016/0076-6879(86)18076-1

Hanley-Bowdoin, L., Orozco, E. M., Jr, & Chua, N. H. (1985). In vitro synthesis and processing of a maize chloroplast transcript encoded by the ribulose 1,5-bisphosphate carboxylase large subunit gene. Molecular and Cellular Biology, 5(10), 2733–2745. https://doi.org/10.1128/mcb.5.10.2733

Hanley-Bowdoin, L., Orozco, E. M., & Chua, N. H. (1985). Transcription of chloroplast genes by homo-logous and heterologous RNA polymerases. In K. E. Steinback, S. Bonitz, C. J. Arntzen, & L. Bogorad (Eds.), Molecular biology of the photosynthetic apparatus (pp. 311–318). Cold Spring Harbor Press.

Hanley-Bowdoin, L., & Lane, B. G. (1983). A novel protein programmed by the mRNA conserved in dry wheat embryos. The principal site of cysteine incorporation during early germination. European Journal of Biochemistry, 135(1), 9–15. https://doi.org/10.1111/j.1432-1033.1983.tb07611.x

Grzelczak, Z. F., Sattolo, M. H., Hanley-Bowdoin, L. K., Kennedy, T. D., & Lane, B. G. (1982). Synthesis and turnover of proteins and mRNA in germinating wheat embryos. Canadian Journal of Biochemistry, 60(3), 389–397. https://doi.org/10.1139/o82-046

Kennedy, T. D., Hanley-Bowdoin, L., & Lane, B. G. (1981). Structural integrity of RNA and translational integrity of ribosomes in nuclease-treated cell-free protein synthesizing systems prepared from wheat germ and rabbit reticulocytes. Journal of Biological Chemistry, 256, 5802–5809.

Bellvé, A. R., Anderson, E., & Hanley-Bowdoin, L. (1975). Synthesis and amino acid composition of basic proteins in mammalian sperm nuclei. Developmental Biology, 47(2), 349–365. https://doi.org/10.1016/0012-1606(75)90289-4