Mansoor Haider

Haider, M. A., Pearce, K. J., Chesler, N. C., Hill, N. A., & Olufsen, M. S. (2024, January 12). Application and reduction of a nonlinear hyperelastic wall model capturing ex vivo relationships between fluid pressure, area, and wall thickness in normal and hypertensive murine left pulmonary arteries. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING, Vol. 1. https://doi.org/10.1002/cnm.3798

Dadashova, K., Smith, R. C., & Haider, M. A. (2024). Local Identifiability Analysis, Parameter Subset Selection and Verification for a Minimal Brain PBPK Model. BULLETIN OF MATHEMATICAL BIOLOGY, 86(2). https://doi.org/10.1007/s11538-023-01234-4

Zhang, X., Xiao, G., Johnson, C., Cai, Y., Horowitz, Z. K., Mennicke, C., … Ghashghaei, H. T. (2023). Bulk and mosaic deletions of Egfr reveal regionally defined gliogenesis in the developing mouse forebrain. ISCIENCE, 26(3). https://doi.org/10.1016/j.isci.2023.106242

McMahon, M. E., Doroshenko, L., Roostaei, J., Cho, H., & Haider, M. A. (2022, June 23). Unsupervised learning methods for efficient geographic clustering and identification of disease disparities with applications to county-level colorectal cancer incidence in California. HEALTH CARE MANAGEMENT SCIENCE, Vol. 6. https://doi.org/10.1007/s10729-022-09604-5

Pearce, K. J., Nellenbach, K., Smith, R. C., Brown, A. C., & Haider, M. A. (2021). Modeling and Parameter Subset Selection for Fibrin Polymerization Kinetics with Applications to Wound Healing. BULLETIN OF MATHEMATICAL BIOLOGY, 83(5). https://doi.org/10.1007/s11538-021-00876-6

Zhang, X., Mennicke, C. V., Xiao, G., Beattie, R., Haider, M. A., Hippenmeyer, S., & Ghashghaei, T. (2020). Clonal Analysis of Gliogenesis in the Cerebral Cortex Reveals Stochastic Expansion of Glia and Cell Autonomous Responses to Egfr Dosage. Cells, 9(12), 2662. https://doi.org/10.3390/cells9122662

Olson, S. D., & Haider, M. A. (2019). A computational reaction–diffusion model for biosynthesis and linking of cartilage extracellular matrix in cell-seeded scaffolds with varying porosity. Biomechanics and Modeling in Mechanobiology, 18(3), 701–716. https://doi.org/10.1007/s10237-018-01110-4

Qureshi, M. U., Colebank, M. J., Schreier, D. A., Tabima, D. M., Haider, M. A., Chesler, N. C., & Olufsen, M. S. (2018). Characteristic impedance: frequency or time domain approach? Physiological Measurement, 39(1), 014004. https://doi.org/10.1088/1361-6579/aa9d60

Qureshi, M. U., Colebank, M. J., Paun, L. M., Ellwein Fix, L., Chesler, N., Haider, M. A., … Olufsen, M. S. (2018). Hemodynamic assessment of pulmonary hypertension in mice: a model-based analysis of the disease mechanism. Biomechanics and Modeling in Mechanobiology, 18(1), 219–243. https://doi.org/10.1007/s10237-018-1078-8

Păun, L. M., Qureshi, M. U., Colebank, M., Hill, N. A., Olufsen, M. S., Haider, M. A., & Husmeier, D. (2018). MCMC methods for inference in a mathematical model of pulmonary circulation. Statistica Neerlandica, 72(3), 306–338. https://doi.org/10.1111/stan.12132

Battista, C., Bia, D., Germán, Y. Z., Armentano, R. L., Haider, M. A., & Olufsen, M. S. (2016). Wave propagation in a 1D fluid dynamics model using pressure-area measurements from ovine arteries. Journal of Mechanics in Medicine and Biology, 16(02), 1650007. https://doi.org/10.1142/S021951941650007X

Aristotelous, A., & Haider, M. (2014). Evaluation of Diffusive Transport and Cellular Uptake of Nutrients in Tissue Engineered Constructs Using a Hybrid Discrete Mathematical Model. Processes, 2(2), 333–344. https://doi.org/10.3390/pr2020333

Aristotelous, A. C., & Haider, M. A. (2014). Use of hybrid discrete cellular models for identification of macroscopic nutrient loss in reaction-diffusion models of tissues. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING, 30(8), 767–780. https://doi.org/10.1002/cnm.2628

Haider, M. A., Olander, J. E., Arnold, R. F., Marous, D. R., McLamb, A. J., Thompson, K. C., … Haugh, J. M. (2011). A phenomenological mixture model for biosynthesis and linking of cartilage extracellular matrix in scaffolds seeded with chondrocytes. Biomechanics and Modeling in Mechanobiology, 10(6), 915–924. https://doi.org/10.1007/s10237-010-0282-y

Hu, Z., & Haider, M. A. (2011). Algebraic Multigrid Preconditioning for Finite Element Solution of Inhomogeneous Elastic Inclusion Problems in Articular Cartilage. ADVANCES IN APPLIED MATHEMATICS AND MECHANICS, 3(6), 729–744. https://doi.org/10.4208/aamm.10-m1070

Valdez-Jasso, D., Bia, D., Zocalo, Y., Armentano, R. L., Haider, M. A., & Olufsen, M. S. (2011). Linear and Nonlinear Viscoelastic Modeling of Aorta and Carotid Pressure-Area Dynamics Under In Vivo and Ex Vivo Conditions. ANNALS OF BIOMEDICAL ENGINEERING, 39(5), 1438–1456. https://doi.org/10.1007/s10439-010-0236-7

Steele, B. N., Valdez-Jasso, D., Haider, M. A., & Olufsen, M. S. (2011). PREDICTING ARTERIAL FLOW AND PRESSURE DYNAMICS USING A 1D FLUID DYNAMICS MODEL WITH A VISCOELASTIC WALL. SIAM JOURNAL ON APPLIED MATHEMATICS, 71(4), 1123–1143. https://doi.org/10.1137/100810186

Stuebner, M., & Haider, M. A. (2010). A fast quadrature-based numerical method for the continuous spectrum biphasic poroviscoelastic model of articular cartilage. Journal of Biomechanics, 43(9), 1835–1839. https://doi.org/10.1016/j.jbiomech.2010.02.023

Kim, E., Guilak, F., & Haider, M. A. (2010). An Axisymmetric Boundary Element Model for Determination of Articular Cartilage Pericellular Matrix Properties In Situ via Inverse Analysis of Chondron Deformation. Journal of Biomechanical Engineering, 132(3), 031011. https://doi.org/10.1115/1.4000938

Valdez-Jasso, D., Bia, D., Haider, M. A., Zocalo, Y., Armentano, R. L., & Olufsen, M. S. (2010). Linear and Nonlinear Viscoelastic Modeling of Ovine Aortic Biomechanical Properties under in vivo and ex vivo Conditions. 2010 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC), pp. 2634–2637. https://doi.org/10.1109/iembs.2010.5626563

Nettles, D. L., Haider, M. A., Chilkoti, A., & Setton, L. A. (2010). Neural Network Analysis Identifies Scaffold Properties Necessary for In Vitro Chondrogenesis in Elastin-like Polypeptide Biopolymer Scaffolds. Tissue Engineering Part A, 16(1), 11–20. https://doi.org/10.1089/ten.tea.2009.0134

Olson, S. D., & Haider, M. A. (2009). A level set reaction-diffusion model for tissue regeneration in a cartilage-hydrogel aggregate. International Journal of Pure and Applied Mathematics, 53, 333–353.

Valdez-Jasso, D., Haider, M. A., Banks, H. T., Santana, D. B., German, Y. Z., Armentano, R. L., & Olufsen, M. S. (2009). Analysis of Viscoelastic Wall Properties in Ovine Arteries. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 56(2), 210–219. https://doi.org/10.1109/TBME.2008.2003093

Haider, M. A., Benedict, B. A., Kim, E., & Guilak, F. (2009). Computational Modeling of Cell Mechanics in Articular Cartilage. In Computational Modeling in Biomechanics (pp. 329–352). https://doi.org/10.1007/978-90-481-3575-2_11

Guilak, F., Haider, M. A., Setton, L. A., Laursen, T. A., & Baaijens, F. P. T. (2009). Multiphasic models of cell mechanics. In M. R. K. Mofrad & R. D. Kamm (Eds.), Cytoskeletal Mechanics (pp. 84–102). https://doi.org/10.1017/cbo9780511607318.006

Valdez-Jasso, D., Banks, H. T., Haider, M. A., Bia, D., Zocalo, Y., Armentano, R. L., & Olufsen, M. S. (2009). Viscoelastic models for passive arterial wall dynamics. Advances in Applied Mathematics & Mechanics, 1(2), 151–165.

Mauldin, F. W., Haider, M. A., Loboa, E. G., Behler, R. H., Euliss, L. E., Pfeiler, T. W., & Gallippi, C. M. (2008). Monitored steady-state excitation and recovery (MSSR) radiation force imaging using viscoelastic models. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 55(7), 1597–1610. https://doi.org/10.1109/tuffc.2008.836

Kim, E., Guilak, F., & Haider, M. A. (2008). The Dynamic Mechanical Environment of the Chondrocyte: A Biphasic Finite Element Model of Cell-Matrix Interactions Under Cyclic Compressive Loading. Journal of Biomechanical Engineering, 130(6), 061009. https://doi.org/10.1115/1.2978991

Haider, M. A., & Guilak, F. (2007). Application of a three-dimensional poroelastic BEM to modeling the biphasic mechanics of cell-matrix interactions in articular cartilage. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, 196(31-32), 2999–3010. https://doi.org/10.1016/j.cma.2006.08.020

Haider, M. A., Schugart, R. C., Setton, L. A., & Guilak, F. (2006). A mechano-chemical model for the passive swelling response of an isolated chondron under osmotic loading. BIOMECHANICS AND MODELING IN MECHANOBIOLOGY, 5(2-3), 160–171. https://doi.org/10.1007/s10237-006-0026-1

Haider, M. A., & Schugart, R. C. (2006). A numerical method for the continuous spectrum biphasic poroviscoelastic model of articular cartilage. JOURNAL OF BIOMECHANICS, 39(1), 177–183. https://doi.org/10.1016/j.jbiomech.2004.10.037

Leddy, H. A., Haider, M. A., & Guilak, F. (2006). Diffusional anisotropy in collagenous tissues: Fluorescence imaging of continuous point photobleaching. BIOPHYSICAL JOURNAL, 91(1), 311–316. https://doi.org/10.1529/biophysj.105.075283

Guilak, F., Alexopoulos, L. G., Upton, M. L., Youn, I., Choi, J. B., Cao, L., … Haider, M. A. (2006). The pericellular matrix as a transducer of biomechanical and biochemical signals in articular cartilage. SKELETAL DEVELOPMENT AND REMODELING IN HEALTH, DISEASE, AND AGING, Vol. 1068, pp. 498–512. https://doi.org/10.1196/annals.1346.011

Guilak, F., Alexopoulos, L. G., Haider, M. A., Ting-Beall, H. P., & Setton, L. A. (2005). Zonal uniformity in mechanical properties of the chondrocyte pericellular matrix: Micropipette aspiration of canine chondrons isolated by cartilage homogenization. ANNALS OF BIOMEDICAL ENGINEERING, 33(10), 1312–1318. https://doi.org/10.1007/s10439-005-4479-7

Haider, M. A. (2004). A radial biphasic model for local cell-matrix mechanics in articular cartilage. SIAM JOURNAL ON APPLIED MATHEMATICS, 64(5), 1588–1608. https://doi.org/10.1137/S0036139902417700

Haider, M. A., Mehta, K. J., & Fouque, J. P. (2004). Time-reversal simulations for detection in randomly layered media. WAVES IN RANDOM MEDIA, 14(2), 185–198. https://doi.org/10.1088/0959-7174/14/2/007

Alexopoulos, L. G., Haider, M. A., Vail, T. P., & Guilak, F. (2003). Alterations in the mechanical properties of the human chondrocyte pericellular matrix with osteoarthritis. JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME, 125(3), 323–333. https://doi.org/10.1115/1.1579047

Haider, M. A., & Guilak, F. (2002). An axisymmetric boundary integral model for assessing elastic cell properties in the micropipette aspiration contact problem. JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME, 124(5), 586–595. https://doi.org/10.1115/1.1504444

Haider, M. A., Shipman, S. P., & Venakides, S. (2002). Boundary-integral calculations of two-dimensional electromagnetic scattering in infinite photonic crystal slabs: Channel defects and resonances. SIAM JOURNAL ON APPLIED MATHEMATICS, 62(6), 2129–2148. https://doi.org/10.1137/S003613990138531X

Haider, M. A., & Guilak, F. (2000, June). An axisymmetric boundary integral model for incompressible linear viscoelasticity: Application to the micropipette aspiration contact problem. JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME, Vol. 122, pp. 236–244. https://doi.org/10.1115/1.429654

Venakides, S., Haider, M. A., & Papanicolaou, V. (2000). Boundary integral calculations of two-dimensional electromagnetic scattering by photonic crystal Fabry-Perot structures. SIAM Journal on Applied Mathematics, 60(5), 1686–1706. https://doi.org/10.1137/s0036139999350779

Venakides, S., Haider, M. A., & Papanicolaou, V. (2000). Wave propagation in photonic crystal models. In G. Dassios, D. I. Fotiadis, C. V. Massalas, & K. Kiriaki (Eds.), Scattering Theory and Biomedical Engineering Modelling and Applications (pp. 120–134). https://doi.org/10.1142/9789812792327_0013

Beaky, M. M., Burk, J. B., Everitt, H. O., Haider, M. A., & Venakides, S. (1999). Two-dimensional photonic crystal Fabry-Perot resonators with lossy dielectrics. IEEE TRANSACTIONS ON MICROWAVE THEORY AND TECHNIQUES, 47(11), 2085–2091. https://doi.org/10.1109/22.798003

Haider, M. A., & Holmes, M. H. (1998). Three dimensional viscoelasticity in finite strain: Formulation of a rate-type constitutive law consistent with dissipation. In D. D. J. D. A. Drew & S. L. Passman (Eds.), Particulate flows: Processing and rheology (The IMA volumes in mathematics and its applications ;  v. 98) (pp. 67–88). https://doi.org/10.1007/978-1-4684-7109-0_4

Haider, M. A., & Holmes, M. H. (1997). A mathematical approximation for the solution of a static indentation test. JOURNAL OF BIOMECHANICS, 30(7), 747–751. https://doi.org/10.1016/S0021-9290(97)00024-9

Haider, M. A., & Holmes, M. H. (1997). Analytic approximations to the deformation of a thin compressible elastic layer by a rigid indenter. In G. Oyibo (Ed.), Applied Mathematics: Methods and Applications (pp. 257–288). Nova Science.

Haider, M. A. (1996). Analytic Appoximations for the Indentation of a Thin Linear Elastic Layer and a Viscoelastic Formulation in Finite Strain with Applications to the Mechanics of Biological Soft Tissues (PhD Thesis). Rensselaer Polytechnic Institute, Troy, NY.

Haider, M. A., & Holmes, M. H. (1996). Analytic approximations to the deformation of a thin compressible elastic layer by a rigid flat indenter. International Journal of Mathematics, Game Theory and Algebra, 5, 1–32.

Haider, M. A., & Holmes, M. H. (1995). Indentation of a thin compressible elastic layer: Approximate analytic and numerical solutions for rigid flat indenters. Journal of the Mechanics and Physics of Solids, 43(8), 1199–1219. https://doi.org/10.1016/0022-5096(95)00032-e