Works (8)

Updated: July 21st, 2023 21:15

2022 journal article

CRISPR-based engineering of phages for in situ bacterial base editing

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(46).

By: M. Nethery n, C. Hidalgo-Cantabrana n, A. Roberts n & R. Barrangou n

co-author countries: United States of America 🇺🇸
author keywords: phage engineering; CRISPR; base editing; soil microbiome
MeSH headings : Gene Editing; CRISPR-Cas Systems / genetics; Bacteriophages / genetics; Ecosystem; Soil
Sources: Web Of Science, ORCID
Added: November 8, 2022

2022 journal article

Clustered Regularly Interspaced Short Palindromic Repeats Genotyping of Multidrug-Resistant Salmonella Heidelberg Strains Isolated From the Poultry Production Chain Across Brazil

FRONTIERS IN MICROBIOLOGY, 13.

By: D. Monte*, M. Nethery n, H. Berman n, S. Keelara n, N. Lincopan*, P. Fedorka-Cray n, R. Barrangou n, M. Landgraf*

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸
author keywords: antibiotic resistance; CRISPR; phylogeny; Salmonella Heidelberg; foodborne disease; WGS
Sources: Web Of Science, ORCID
Added: July 11, 2022

2022 article

Functional characterization of diverse type I-F CRISPR-associated transposons

Roberts, A., Nethery, M. A., & Barrangou, R. (2022, November 17). NUCLEIC ACIDS RESEARCH, Vol. 11.

By: A. Roberts n, M. Nethery n & R. Barrangou n

co-author countries: United States of America 🇺🇸
MeSH headings : CRISPR-Cas Systems; Plasmids; Endonucleases / metabolism; Escherichia coli / genetics; Escherichia coli / metabolism; DNA; RNA; CRISPR-Associated Proteins / genetics; CRISPR-Associated Proteins / metabolism
Sources: Web Of Science, ORCID
Added: October 19, 2022

2021 journal article

CRISPRclassify: Repeat-Based Classification of CRISPR Loci

CRISPR JOURNAL, 4(4), 558–574.

By: M. Nethery n, M. Korvink*, K. Makarova*, Y. Wolf*, E. V. Koonin* & R. Barrangou n

co-author countries: United States of America 🇺🇸
MeSH headings : Algorithms; Area Under Curve; Base Sequence; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Computational Biology / methods; Databases, Genetic; Gene Editing; Genetic Loci; Genome, Bacterial; Genomics / methods; Reproducibility of Results
Sources: Web Of Science, ORCID
Added: September 7, 2021

2021 journal article

Whole-genome sequencing analysis and CRISPR genotyping of rare antibiotic-resistant Salmonella enterica serovars isolated from food and related sources

FOOD MICROBIOLOGY, 93.

By: D. Monte n, M. Nethery n, R. Barrangou n, M. Landgraf* & P. Fedorka-Cray n

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸
author keywords: Antibiotic resistance; CRISPR; Phylogeny; Salmonella serovars; Whole genome sequencing
MeSH headings : Anti-Bacterial Agents / pharmacology; Brazil; Clustered Regularly Interspaced Short Palindromic Repeats; Drug Resistance, Multiple, Bacterial / genetics; Food Microbiology; Genome, Bacterial; Genotype; Genotyping Techniques; Microbial Sensitivity Tests; Salmonella / classification; Salmonella / genetics; Salmonella / isolation & purification; Salmonella Food Poisoning; Salmonella enterica / classification; Salmonella enterica / drug effects; Salmonella enterica / genetics; Salmonella enterica / isolation & purification; Serogroup; Serotyping; Whole Genome Sequencing
Sources: Web Of Science, ORCID
Added: October 5, 2020

2019 journal article

CRISPR Visualizer: rapid identification and visualization of CRISPR loci via an automated high-throughput processing pipeline

RNA BIOLOGY, 16(4), 577–584.

By: M. Nethery n & R. Barrangou n

co-author countries: United States of America 🇺🇸
author keywords: CRISPR-Cas; repeat detection; software; CRISPR spacer; crRNA
MeSH headings : Bacteria / genetics; Base Sequence; CRISPR-Cas Systems / genetics; Computational Biology; Genetic Loci; High-Throughput Nucleotide Sequencing / methods; Time Factors
Sources: Web Of Science, ORCID
Added: May 20, 2019

2019 journal article

Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage

BMC GENOMICS, 20(1).

By: M. Nethery n, E. Henriksen n, K. Daughtry n, S. Johanningsmeier n & R. Barrangou n

co-author countries: United States of America 🇺🇸
author keywords: Lactobacillus buchneri; Comparative genomics; Lactic acid bacteria; CRISPR-Cas systems; Fermentation; Spoilage; Food microbiology
MeSH headings : Computational Biology / methods; Evolution, Molecular; Fermentation; Food Microbiology; Genome, Bacterial; Genomics / methods; Lactobacillus / classification; Lactobacillus / genetics; Lactobacillus / isolation & purification; Molecular Sequence Annotation; Phylogeny; Whole Genome Sequencing
Sources: Web Of Science, ORCID
Added: December 16, 2019

2019 article

Predicting and visualizing features of CRISPR-Cas systems

CRISPR-CAS ENZYMES, Vol. 616, pp. 1–25.

By: M. Nethery n & R. Barrangou n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Bacteria / genetics; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Computer Simulation; Gene Editing / methods; Genomics / methods; Humans; RNA, Guide, Kinetoplastida / genetics; Software
Sources: Web Of Science, ORCID
Added: December 30, 2019

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