Michael B. Goshe
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Works (50)
Updated: September 12th, 2023 05:01
2023 article
Identifying the enzyme responsible for initiating aerobic acetylene metabolism in Rhodococcus rhodochrous ATCC 33258
JOURNAL OF BIOLOGICAL CHEMISTRY, Vol. 299, pp. S369–S369.
doi.org (publisher)
Sources: Web Of Science, ORCID
Added: September 11, 2023
2023 journal article
Tizoxanide Antiviral Activity on Dengue Virus Replication
VIRUSES-BASEL, 15(3).
author keywords: antiviral; tizoxanide; dengue virus; virucidal activity
MeSH headings : Chlorocebus aethiops; Animals; Humans; Antiviral Agents / pharmacology; Antiviral Agents / therapeutic use; Vero Cells; Dengue / drug therapy; Dengue Virus / genetics; Proteomics; Virus Replication
Source: Web Of Science
Added: April 17, 2023
2021 article
Identification of multiple proteins whose interaction with mannitol dehydrogenase is induced by salicylic acid: Implications for unconventional secretion
Ho, T. C., Blackburn, R. K., Goshe, M. B., & Williamson, J. D. (2021, September 24). PROTEOMICS.
author keywords: database; mass spectrometry; plant pathogen interaction; protein-protein interaction; proteomics; unconventional protein secretion
MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Gene Expression Regulation, Plant; Mannitol Dehydrogenases / genetics; Mannitol Dehydrogenases / metabolism; Plants / metabolism; Proteins; Salicylic Acid / pharmacology
Source: Web Of Science
Added: October 4, 2021
2020 journal article
Inhalation of lung spheroid cell secretome and exosomes promotes lung repair in pulmonary fibrosis
NATURE COMMUNICATIONS, 11(1).
MeSH headings : Administration, Inhalation; Alveolar Epithelial Cells / drug effects; Alveolar Epithelial Cells / metabolism; Alveolar Epithelial Cells / pathology; Animals; Apoptosis / drug effects; Bleomycin / toxicity; Cell Proliferation; Disease Models, Animal; Exosomes / metabolism; Exosomes / transplantation; Humans; Idiopathic Pulmonary Fibrosis / chemically induced; Idiopathic Pulmonary Fibrosis / metabolism; Idiopathic Pulmonary Fibrosis / pathology; Idiopathic Pulmonary Fibrosis / therapy; Lung / cytology; Lung / metabolism; Lung Injury / chemically induced; Lung Injury / metabolism; Lung Injury / pathology; Lung Injury / therapy; Mesenchymal Stem Cells / metabolism; Mice; Myofibroblasts / cytology; Proteomics; Silicon Dioxide / toxicity; Spheroids, Cellular / metabolism
Sources: Web Of Science, ORCID
Added: March 23, 2020
2020 journal article
Quantitative proteomic analysis of the tizoxanide effect in vero cells
SCIENTIFIC REPORTS, 10(1).
MeSH headings : Animals; Anti-Infective Agents / pharmacology; Chlorocebus aethiops; Fatty Acid Synthases / genetics; Fatty Acid Synthases / metabolism; Proteome / drug effects; Proteome / genetics; Proteome / metabolism; Ribonucleoproteins / genetics; Ribonucleoproteins / metabolism; Thiazoles / pharmacology; Vero Cells
Source: Web Of Science
Added: October 5, 2020
2019 journal article
Proteomic method to extract, concentrate, digest and enrich peptides from fossils with coloured (humic) substances for mass spectrometry analyses
ROYAL SOCIETY OPEN SCIENCE, 6(8).
author keywords: palaeoproteomics; fossils; humic substances; protein; mass spectrometry; moa
Sources: Web Of Science, ORCID
Added: September 23, 2019
2019 journal article
Public questions spur the discovery of new bacterial species associated with lignin bioconversion of industrial waste
ROYAL SOCIETY OPEN SCIENCE, 6(3).
author keywords: greenhouse camel cricket; hide beetle; Cedecea lapagei; lignocellulose; secretome
Sources: Web Of Science, ORCID
Added: May 28, 2019
2019 journal article
Targeted Capture of Chinese Hamster Ovary Host Cell Proteins: Peptide Ligand Discovery
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 20(7).
author keywords: therapeutic antibodies; host cell proteins; protein purification; peptide ligands
MeSH headings : Animals; CHO Cells; Chromatography, Affinity; Chromatography, Liquid; Cricetinae; Cricetulus; Humans; Peptides / chemistry; Peptides / isolation & purification; Proteomics / methods
Sources: Web Of Science, ORCID
Added: May 6, 2019
2018 journal article
Sucrose Nonfermenting 1-Related Protein Kinase 1 Phosphorylates a Geminivirus Rep Protein to Impair Viral Replication and Infection
PLANT PHYSIOLOGY, 178(1), 372–389.
MeSH headings : Amino Acid Sequence; Begomovirus / genetics; Begomovirus / metabolism; Begomovirus / physiology; Host-Pathogen Interactions; Solanum lycopersicum / enzymology; Solanum lycopersicum / virology; Mutation; Phosphorylation; Plant Diseases / virology; Plant Proteins / genetics; Plant Proteins / metabolism; Protein Binding; Protein Domains; Protein Serine-Threonine Kinases / genetics; Protein Serine-Threonine Kinases / metabolism; Sequence Homology, Amino Acid; Serine / genetics; Serine / metabolism; Viral Proteins / chemistry; Viral Proteins / genetics; Viral Proteins / metabolism; Virus Replication
Sources: Web Of Science, ORCID
Added: October 16, 2018
2017 journal article
Autophosphorylation-based Calcium (Ca2(+)) Sensitivity Priming and Ca2(+)/Calmodulin Inhibition of Arabidopsis thaliana Ca2(+)-dependent Protein Kinase 28 (CPK28)
JOURNAL OF BIOLOGICAL CHEMISTRY, 292(10), 3988–4002.
MeSH headings : Amino Acid Sequence; Arabidopsis / drug effects; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Calcium / pharmacology; Calmodulin / pharmacology; Gene Expression Regulation, Plant / drug effects; Kinetics; Phosphorylation / drug effects; Protein Binding; Protein Conformation; Protein Interaction Domains and Motifs; Protein Kinases / chemistry; Protein Kinases / metabolism; Sequence Homology, Amino Acid
Source: Web Of Science
Added: August 6, 2018
2017 journal article
Quantitative Proteomic Analysis of Human Airway Cilia Identifies Previously Uncharacterized Proteins of High Abundance
JOURNAL OF PROTEOME RESEARCH, 16(4), 1579–1592.
author keywords: cilia; axoneme; mass spectrometry; proteomics; airway; dynein; tubulin; radial spoke
MeSH headings : Axoneme / genetics; Cilia / genetics; Dyneins / genetics; Dyneins / isolation & purification; Gene Expression Regulation; Humans; Proteins / genetics; Proteins / isolation & purification; Proteome / genetics; Proteomics; Tubulin / genetics; Tubulin / isolation & purification
Source: Web Of Science
Added: August 6, 2018
2017 journal article
The Arabidopsis Leucine-Rich Repeat Receptor Kinase BIR3 Negatively Regulates BAK1 Receptor Complex Formation and Stabilizes BAK1
PLANT CELL, 29(9), 2285–2303.
MeSH headings : Arabidopsis / drug effects; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Brassinosteroids / metabolism; Cell Death / drug effects; Flagellin / pharmacology; Leucine-Rich Repeat Proteins; Ligands; Membrane Proteins / metabolism; Mutation / genetics; Pathogen-Associated Molecular Pattern Molecules / metabolism; Phenotype; Protein Binding / drug effects; Protein Serine-Threonine Kinases / metabolism; Protein Stability / drug effects; Proteins / metabolism; Signal Transduction
Source: Web Of Science
Added: August 6, 2018
2016 journal article
Gatekeeper Tyrosine Phosphorylation of SYMRK Is Essential for Synchronizing the Epidermal and Cortical Responses in Root Nodule Symbiosis
PLANT PHYSIOLOGY, 171(1), 71–81.
MeSH headings : Amino Acid Sequence; Carrier Proteins / genetics; Carrier Proteins / metabolism; Fabaceae / metabolism; Gene Expression Regulation, Plant; Genes, Plant; Mutagenesis; Mutation; Phenotype; Phosphoamino Acids / analysis; Phosphorylation; Plant Epidermis; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Root Nodulation; Plant Roots / metabolism; Plant Roots / microbiology; Protein Kinases / genetics; Protein Kinases / metabolism; Rhizobium / physiology; Root Nodules, Plant / enzymology; Root Nodules, Plant / genetics; Root Nodules, Plant / metabolism; Symbiosis; Tyrosine / metabolism
Source: Web Of Science
Added: August 6, 2018
2015 journal article
Development of a tandem affinity phosphoproteomic method with motif selectivity and its application in analysis of signal transduction networks
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 988, 166–174.
author keywords: Phosphopeptide enrichment; Liquid chromatography; Mass spectrometry; Motif analysis; Pathway analysis
MeSH headings : Amino Acid Sequence; Chromatography, Liquid / methods; Molecular Sequence Data; Phosphopeptides / analysis; Phosphopeptides / chemistry; Proteomics / methods; Signal Transduction / physiology; Tandem Mass Spectrometry / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Performing protein crosslinking using gas-phase cleavable chemical crosslinkers and liquid chromatography-tandem mass spectrometry
METHODS, 89, 64–73.
author keywords: Protein structure; Protein-protein interactions; Crosslinking; Gas-phase cleavable crosslinkers; CID-cleavable crosslinkers; Mass spectrometry
MeSH headings : Animals; Cattle; Chromatography, Liquid / methods; Cross-Linking Reagents / chemistry; Cross-Linking Reagents / metabolism; Protein Binding / physiology; Serum Albumin, Bovine / analysis; Serum Albumin, Bovine / metabolism; Tandem Mass Spectrometry / methods
Source: Web Of Science
Added: August 6, 2018
2014 journal article
Data-driven modeling reconciles kinetics of ERK phosphorylation, localization, and activity states
MOLECULAR SYSTEMS BIOLOGY, 10(1).
author keywords: growth factor receptors; mitogen-activated protein kinases; negative feedback; nucleocytoplasmic shuttling; mathematical model
MeSH headings : Active Transport, Cell Nucleus; Animals; Extracellular Signal-Regulated MAP Kinases / chemistry; Extracellular Signal-Regulated MAP Kinases / metabolism; Feedback, Physiological; Kinetics; Mice; Models, Theoretical; NIH 3T3 Cells; Phosphorylation; Protein Transport / genetics; Receptors, Growth Factor / genetics; Signal Transduction / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
Protein Molecular Data from Ancient (>1 million years old) Fossil Material: Pitfalls, Possibilities and Grand Challenges
Analytical Chemistry, 86(14), 6731–6740.
MeSH headings : Animals; Bone and Bones; Collagen / analysis; Collagen / chemistry; Dinosaurs; Fossils; Hydroxyproline / analysis; Keratins / analysis; Keratins / chemistry; Mass Spectrometry / methods; Proteins / analysis; Proteomics / methods
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2014 journal article
SnRK1 Phosphorylation of AL2 Delays Cabbage Leaf Curl Virus Infection in Arabidopsis
JOURNAL OF VIROLOGY, 88(18), 10598–10612.
MeSH headings : Amino Acid Sequence; Arabidopsis / enzymology; Arabidopsis / genetics; Arabidopsis / virology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Begomovirus / chemistry; Begomovirus / classification; Begomovirus / genetics; Begomovirus / metabolism; Host-Pathogen Interactions; Molecular Sequence Data; Phylogeny; Plant Diseases / virology; Protein Binding; Protein Kinases / genetics; Protein Kinases / metabolism; Transcription Factors / genetics; Transcription Factors / metabolism; Viral Proteins / chemistry; Viral Proteins / genetics; Viral Proteins / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Autophosphorylation of gatekeeper tyrosine by symbiosis receptor kinase
FEBS LETTERS, 587(18), 2972–2979.
author keywords: Autophosphorylation; Gatekeeper residue; Receptor-like kinase; Symbiosis receptor kinase; Tyrosine kinase-like
MeSH headings : Amino Acid Motifs; Arachis / genetics; Arachis / metabolism; Catalytic Domain; Cell Line; Gene Expression Regulation, Plant; Mutation; Phosphorylation; Plant Proteins / genetics; Plant Proteins / metabolism; Protein Binding; Receptor Protein-Tyrosine Kinases / genetics; Receptor Protein-Tyrosine Kinases / metabolism; Recombinant Proteins / genetics; Recombinant Proteins / metabolism; Signal Transduction; Tyrosine / genetics; Tyrosine / metabolism
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Chemical crosslinking and LC/MS analysis to determine protein domain orientation: Application to AbrB
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 431(2), 253–257.
author keywords: NMR; Solution structure; Chemical crosslinking; Domain orientation; AbrB; Gas-phase cleavable
MeSH headings : Amino Acid Sequence; Bacterial Proteins / chemistry; Chromatography, Liquid; Cross-Linking Reagents / chemistry; DNA-Binding Proteins / chemistry; Molecular Sequence Data; Protein Structure, Tertiary; Tandem Mass Spectrometry; Transcription Factors / chemistry
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Identification and Functional Analysis of Tomato BRI1 and BAK1 Receptor Kinase Phosphorylation Sites
PLANT PHYSIOLOGY, 163(1), 30–42.
MeSH headings : Binding Sites; Kinetics; Solanum lycopersicum / enzymology; Phosphorylation; Plant Proteins / chemistry; Plant Proteins / metabolism; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / metabolism; Signal Transduction
Source: Web Of Science
Added: August 6, 2018
2012 journal article
An enhanced protein crosslink identification strategy using CID-cleavable chemical crosslinkers and LC/MSn analysis
PROTEOMICS, 12(3), 401–405.
author keywords: CID-cleavable crosslinker; Crosslinking; Mass measurement accuracy; Multistage CID; Protein-protein interactions; Technology
MeSH headings : Algorithms; Chromatography, Liquid / methods; Complex Mixtures / analysis; Databases, Protein; Hemoglobins / chemistry; Humans; Mass Spectrometry / methods; Peptides / analysis; Peptides / metabolism; Proteins / analysis; Proteins / metabolism
Source: Web Of Science
Added: August 6, 2018
2012 journal article
Proteomic and Phosphoproteomic Analysis of Chicken Embryo Fibroblasts Infected with Cell Culture-Attenuated and Vaccine Strains of Marek's Disease Virus
JOURNAL OF PROTEOME RESEARCH, 11(12), 5663–5677.
author keywords: proteomics; phosphoproteomics; liquid chromatography; mass spectrometry; Marek's Disease Virus; phosphorylation
MeSH headings : Amino Acid Sequence; Animals; Cells, Cultured; Chick Embryo; Chromatography, Affinity / methods; Eukaryotic Initiation Factor-4E / metabolism; Fibroblasts / metabolism; Fibroblasts / virology; Herpesvirus 2, Gallid / classification; Herpesvirus 2, Gallid / pathogenicity; Marek Disease; Mass Spectrometry / methods; Molecular Sequence Data; Multiprotein Complexes / analysis; Multiprotein Complexes / metabolism; Peptide Chain Initiation, Translational; Phosphopeptides / analysis; Phosphopeptides / metabolism; Phosphoproteins / analysis; Phosphoproteins / metabolism; Phosphorylation; Proteome / analysis; Proteome / metabolism; Proteomics / methods; Transcription, Genetic; Viral Plaque Assay
Source: Web Of Science
Added: August 6, 2018
2011 review
Advances in qualitative and quantitative plant membrane proteomics
[Review of ]. PHYTOCHEMISTRY, 72(10), 1040–1060.
author keywords: Membrane proteomics; Liquid chromatography; Mass spectrometry; Quantitation; Quantification; Stable isotope-coded; Label-free
MeSH headings : Cell Membrane / chemistry; Cell Membrane / metabolism; Organelles / chemistry; Organelles / metabolism; Plant Proteins / analysis; Plant Proteins / metabolism; Protein Processing, Post-Translational; Proteomics
Source: Web Of Science
Added: August 6, 2018
2011 journal article
Development and Application of a Phosphoproteomic Method Using Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC), IMAC, and LC-MS/MS Analysis to Study Marek's Disease Virus Infection
JOURNAL OF PROTEOME RESEARCH, 10(9), 4041–4053.
author keywords: phosphoproteomics; liquid chromatography; mass spectrometry; Marek's Disease Virus; phosphorylation
MeSH headings : Amino Acid Sequence; Animals; Avian Proteins / analysis; Avian Proteins / metabolism; Chick Embryo; Chromatography, Liquid; Fibroblasts; Host-Pathogen Interactions / physiology; Hydrophobic and Hydrophilic Interactions; Mardivirus; Marek Disease / immunology; Marek Disease / metabolism; Marek Disease / virology; Molecular Sequence Data; Peptide Fragments / analysis; Peptide Fragments / metabolism; Phosphopeptides / analysis; Phosphopeptides / metabolism; Proteomics / methods; Proteomics / standards; Reproducibility of Results; Static Electricity; Tandem Mass Spectrometry; Viral Proteins / analysis; Viral Proteins / metabolism
Source: Web Of Science
Added: August 6, 2018
2011 journal article
Investigation of solubilization and digestion methods for microsomal membrane proteome analysis using data-independent LC-MSE
PROTEOMICS, 11(5), 898–911.
author keywords: Bottom-up proteomics; Data-independent analysis; Denaturants; LC-MSE; Membrane proteomics; Technology
MeSH headings : Chromatography, Liquid; Guanidine / chemistry; Solanum lycopersicum / chemistry; Membrane Proteins / analysis; Membrane Proteins / chemistry; Membrane Proteins / metabolism; Methanol / chemistry; Microsomes / chemistry; Microsomes / enzymology; Peptide Fragments / analysis; Peptide Fragments / chemistry; Peptide Fragments / metabolism; Plant Roots / chemistry; Plant Roots / cytology; Proteome / analysis; Proteome / chemistry; Proteome / metabolism; Proteomics / methods; Solubility; Surface-Active Agents / chemistry; Tandem Mass Spectrometry; Trypsin / metabolism
Source: Web Of Science
Added: August 6, 2018
2011 journal article
Mass Spectrometric Detection of Targeting Peptide Bioconjugation to Red clover necrotic mosaic virus
BIOCONJUGATE CHEMISTRY, 22(10), 1970–1982.
MeSH headings : Amino Acid Sequence; Capsid / chemistry; Cross-Linking Reagents / chemistry; Drug Delivery Systems; Mass Spectrometry; Models, Molecular; Molecular Sequence Data; Peptides / chemistry; Tombusviridae / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018
2010 journal article
Combinatorial Electrostatic Collision-Induced Dissociative Chemical Cross-linking Reagents for Probing Protein Surface Topology
ANALYTICAL CHEMISTRY, 82(14), 6215–6223.
MeSH headings : Amino Acid Sequence; Animals; Cattle; Chromatography, Liquid / methods; Circular Dichroism; Cross-Linking Reagents / chemistry; Dipeptides / chemistry; Hemoglobins / chemistry; Hemoglobins / metabolism; Molecular Sequence Data; Protein Structure, Tertiary; Proteins / chemistry; Serum Albumin, Bovine / chemistry; Serum Albumin, Bovine / metabolism; Static Electricity; Tandem Mass Spectrometry / methods
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Data-independent liquid chromatography/mass spectrometry (LC/MSE) detection and quantification of the secreted Apium graveolens pathogen defense protein mannitol dehydrogenase
Rapid Communications in Mass Spectrometry, 24(7), 1009–1016.
MeSH headings : Amino Acid Sequence; Apium / drug effects; Apium / enzymology; Cell Culture Techniques; Chromatography, Liquid / methods; Electrophoresis, Polyacrylamide Gel; Immunoblotting; Mannitol Dehydrogenases / chemistry; Mannitol Dehydrogenases / genetics; Mannitol Dehydrogenases / metabolism; Molecular Sequence Data; Proteome / analysis; Proteome / drug effects; Proteome / metabolism; Salicylic Acid / pharmacology; Tandem Mass Spectrometry / methods
Source: NC State University Libraries
Added: August 6, 2018
2010 journal article
Improving Protein and Proteome Coverage through Data-Independent Multiplexed Peptide Fragmentation
JOURNAL OF PROTEOME RESEARCH, 9(7), 3621–3637.
author keywords: Proteomics; mass spectrometry; protein characterization; data-independent acquisition (DIA); data-dependent acquisition (DDA); protein identification; LC/MSE
MeSH headings : Amino Acid Sequence; Animals; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Artifacts; Cattle; Chromatography, Liquid / methods; Ions / chemistry; Solanum lycopersicum; Mass Spectrometry / methods; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Fragments / metabolism; Plant Leaves; Plant Proteins / chemistry; Plant Proteins / metabolism; Protein Kinases / chemistry; Protein Kinases / metabolism; Proteomics / methods; Serum Albumin, Bovine / chemistry; Serum Albumin, Bovine / metabolism; Trypsin / metabolism
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism
Journal of Proteome Research, 9(10), 5370–5381.
author keywords: LC/MSE; plant-parasite; nematode; data-independent acquisition; computational proteome
MeSH headings : Animals; Chromatography, Liquid; Computational Biology / methods; Databases, Protein; Genome, Helminth / genetics; Helminth Proteins / genetics; Helminth Proteins / metabolism; Humans; Internet; Plant Roots / parasitology; Proteomics / methods; Tandem Mass Spectrometry; Tylenchoidea / genetics; Tylenchoidea / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2009 journal article
A role for hydrophobicity in a DielsAlder reaction catalyzed by pyridyl-modified RNA
NUCLEIC ACIDS RESEARCH, 37(9), 3074–3082.
MeSH headings : Anthracenes / metabolism; Base Sequence; Catalysis; Ethylene Glycols / metabolism; Hydrophobic and Hydrophilic Interactions; Lactones; Molecular Sequence Data; Nucleic Acid Conformation; Pyridines / chemistry; RNA / chemistry; RNA / metabolism; RNA, Catalytic / chemistry; RNA, Catalytic / metabolism; Sesquiterpenes
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Absolute Protein Quantification by LC/MSE for Global Analysis of Salicylic Acid-induced Plant Protein Secretion Responses
JOURNAL OF PROTEOME RESEARCH, 8(1), 82–93.
author keywords: Arabidopsis; secretome; liquid chromatography; mass spectrometry; MSE; data-independent acquisition; salicylic acid; pathogen; nonclassical protein secretion
MeSH headings : Arabidopsis / drug effects; Arabidopsis / metabolism; Chromatography, Liquid / methods; Computational Biology; Mass Spectrometry / methods; Plant Physiological Phenomena; Plant Proteins / metabolism; Proteins / metabolism; Proteome; Proteomics / methods; Salicylic Acid / metabolism; Salicylic Acid / pharmacology; Time Factors
Source: Web Of Science
Added: August 6, 2018
2009 review
Advances in Quantitative Mass Spectrometry Analysis: Weighing in on Isotope Coding and Label-Free Approaches for Expression and Functional Proteomics
[Review of ]. CURRENT ANALYTICAL CHEMISTRY, 5(2), 166–185.
author keywords: Mass spectrometry; Quantitative proteomics; Phosphoproteomics; Isotope coding; Label-free quantitation; Absolute quantitation
Source: Web Of Science
Added: August 6, 2018
2009 journal article
An Efficient Organic Solvent Based Extraction Method for the Proteomic Analysis of Arabidopsis Plasma Membranes
JOURNAL OF PROTEOME RESEARCH, 8(6), 2752–2767.
author keywords: Proteomics; mass spectrometry; liquid chromatography; strong cation exchanges; phase partitioning; membrane proteins; transporters; Arabidopsis; methanol
MeSH headings : Amino Acid Sequence; Arabidopsis / chemistry; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / isolation & purification; Arabidopsis Proteins / metabolism; Chemical Fractionation / methods; Chloroform; Chlorophyll; Chromatography, Ion Exchange; Databases, Protein; Membrane Proteins / chemistry; Membrane Proteins / isolation & purification; Membrane Proteins / metabolism; Methanol; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Fragments / metabolism; Protein Kinases / isolation & purification; Protein Kinases / metabolism; Proteomics / methods; Solvents / chemistry; Tandem Mass Spectrometry; Trypsin / metabolism
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Mass Spectrometry Bioinformatics: Tools for Navigating the Proteomics Landscape
CURRENT ANALYTICAL CHEMISTRY, 5(2), 131–143.
author keywords: Mass spectrometry; Peptide identification; Product ion spectrum; Database searching; Proteomics; Bioinformatics
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106(2), 658–663.
MeSH headings : Arabidopsis; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Mutation; Phosphorylation; Plant Leaves; Protein Kinases / genetics; Protein Kinases / metabolism; Protein Serine-Threonine Kinases / metabolism; Signal Transduction; Tyrosine / metabolism
Source: Web Of Science
Added: August 6, 2018
2008 journal article
A sequence-anchored genetic linkage map for the moss, Physcomitrella patens
Plant Journal, 56(5), 840–854.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
Changes in the Gallus gallus proteorne induced by Marek's disease virus
JOURNAL OF PROTEOME RESEARCH, 7(10), 4346–4358.
author keywords: Marek's disease virus; chicken proteome; mu rpLC/MS/MS
MeSH headings : Animals; Chickens / virology; Computational Biology; Herpesvirus 2, Gallid / metabolism; Humans; Mass Spectrometry; Molecular Sequence Data; Peptides / analysis; Phosphopeptides / analysis; Proteome
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Characterization of a new family of protein kinases from Arabidopsis containing phosphoinositide 3/4-kinase and ubiquitin-like domains
BIOCHEMICAL JOURNAL, 409, 117–127.
author keywords: phosphoinositide kinase (PIK); phosphorylation; proteasome regulatory particle non-ATPase 10 subunit (proteasome RPN10 subunit); protein kinase; ubiquitin fusion degradation (UFD); ubiquitin-like domain (UBL domain)
MeSH headings : Adaptor Proteins, Signal Transducing / chemistry; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Catalysis; Class Ia Phosphatidylinositol 3-Kinase; Cloning, Molecular; DNA, Complementary / metabolism; Genetic Vectors; Humans; Phosphatidylinositol 3-Kinases / chemistry; Phosphatidylinositol 3-Kinases / metabolism; Phosphorylation; Phylogeny; Protein Kinases / chemistry; Protein Kinases / classification; Protein Structure, Tertiary; Recombinant Proteins / chemistry; Ubiquitin / chemistry; Ubiquitin / metabolism
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling
DEVELOPMENTAL CELL, 15(2), 220–235.
MeSH headings : Amino Acid Sequence; Arabidopsis / drug effects; Arabidopsis / enzymology; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Brassinosteroids; Cholestanols / metabolism; Cholestanols / pharmacology; Chromatography, Liquid; Flagellin / metabolism; Mass Spectrometry; Models, Biological; Molecular Sequence Data; Mutation / genetics; Phosphorylation / drug effects; Protein Kinases / chemistry; Protein Kinases / metabolism; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / metabolism; Protein Structure, Tertiary; Signal Transduction / drug effects; Steroids, Heterocyclic / metabolism; Steroids, Heterocyclic / pharmacology; Substrate Specificity / drug effects
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Location and role of free cysteinyl residues in the Sindbis virus E1 and E2 glycoproteins
JOURNAL OF VIROLOGY, 81(12), 6231–6240.
MeSH headings : Amino Acid Sequence; Animals; Capsid / chemistry; Cell Line; Chromatography, Liquid; Cricetinae; Cysteine / chemistry; Disulfides / chemistry; Iodoacetamide / pharmacology; Mass Spectrometry; Membrane Glycoproteins / chemistry; Molecular Sequence Data; Mutation; Protein Conformation; Viral Envelope Proteins / chemistry
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques
JOURNAL OF PROTEOME RESEARCH, 6(5), 1933–1950.
author keywords: arabidopsis; proteomics; liquid chromatography; mass spectrometry; membrane proteins; phosphorylation; leucine-rich repeat receptor-like kinases
MeSH headings : Amino Acid Sequence; Arabidopsis / chemistry; Arabidopsis / cytology; Arabidopsis Proteins / analysis; Arabidopsis Proteins / genetics; Arabidopsis Proteins / isolation & purification; Bacteriorhodopsins / analysis; Bacteriorhodopsins / genetics; Bacteriorhodopsins / isolation & purification; Cetomacrogol / chemistry; Chromatography, Liquid / methods; Cytochromes c / analysis; Cytochromes c / genetics; Cytochromes c / isolation & purification; Membrane Proteins / analysis; Membrane Proteins / genetics; Membrane Proteins / isolation & purification; Methanol / chemistry; Molecular Sequence Data; Peptides / analysis; Peptides / chemistry; Peptides / genetics; Proteome / analysis; Solubility; Surface-Active Agents / chemistry; Tandem Mass Spectrometry / methods
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Tandem mass spectrometry acquisition approaches to enhance identification of protein-protein interactions using low-energy collision-induced dissociative chemical crosslinking reagents
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 21(21), 3395–3408.
MeSH headings : Amino Acid Sequence; Bacillus subtilis / chemistry; Bacillus subtilis / metabolism; Bacterial Proteins / chemistry; Cross-Linking Reagents / chemistry; DNA-Binding Proteins / chemistry; Molecular Sequence Data; Peptide Mapping; Peptides / chemistry; Protein Conformation; Spectrometry, Mass, Electrospray Ionization; Tandem Mass Spectrometry / methods; Transcription Factors / chemistry
Source: Web Of Science
Added: August 6, 2018
2006 journal article
A mass spectrometry-based proteomic approach to study Marek's Disease Virus gene expression
Journal of Virological Methods, 135(1), 66–75.
author keywords: proteomics; gene expression; liquid chromatography; mass spectrometry; Marek's Disease Virus
MeSH headings : Animals; Cells, Cultured; Chick Embryo; Chromatography, Ion Exchange; Computational Biology; Databases, Protein; Fibroblasts / virology; Gas Chromatography-Mass Spectrometry; Gene Expression Profiling / methods; Herpesvirus 2, Gallid / genetics; Proteome / analysis; Proteome / isolation & purification; Proteomics / methods; Trypsin / metabolism; Viral Proteins / analysis; Viral Proteins / isolation & purification
Sources: Web Of Science, Crossref
Added: August 6, 2018
2006 journal article
Collision-induced dissociative chemical cross-linking reagents and methodology: Applications to protein structural characterization using tandem mass spectrometry analysis
ANALYTICAL CHEMISTRY, 78(23), 8059–8068.
MeSH headings : Amino Acid Sequence; Animals; Aspartic Acid / chemistry; Cross-Linking Reagents / chemistry; Glutathione Transferase / chemistry; Glutathione Transferase / genetics; Glutathione Transferase / metabolism; Models, Molecular; Molecular Sequence Data; Proline / chemistry; Protein Structure, Tertiary; Recombinant Fusion Proteins / chemistry; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Schistosoma japonicum / genetics; Schistosoma japonicum / metabolism; Serum Albumin, Bovine / chemistry; Serum Albumin, Bovine / genetics; Serum Albumin, Bovine / metabolism; Tandem Mass Spectrometry / methods
Source: Web Of Science
Added: August 6, 2018
2006 journal article
Novel protein purification system utilizing an N-terminal fusion protein and a caspase-3 cleavable linker
Protein Expression and Purification, 47(1), 311–318.
author keywords: caspase-3; fusion protein; protein expression; proteolysis
MeSH headings : Amino Acid Sequence; Caspase 3 / metabolism; Caspase 3 / physiology; Glutathione Transferase / genetics; Histidine / genetics; Hydrolysis; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Fragments / genetics; Peptide Fragments / metabolism; Protein Structure, Tertiary / genetics; Proteins / genetics; Proteins / isolation & purification; Proteins / metabolism; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / isolation & purification; Recombinant Fusion Proteins / metabolism
Sources: Crossref, Web Of Science
Added: August 6, 2018
2005 journal article
Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase
PLANT CELL, 17(6), 1685–1703.
MeSH headings : Arabidopsis / enzymology; Arabidopsis / genetics; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Binding Sites / physiology; Cell Membrane / metabolism; Conserved Sequence / genetics; Mutation / genetics; Phosphorylation; Protein Kinases / chemistry; Protein Kinases / genetics; Protein Kinases / metabolism; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / genetics; Protein Serine-Threonine Kinases / metabolism; Protein Structure, Tertiary / physiology; Serine / chemistry; Serine / metabolism; Signal Transduction / physiology; Threonine / chemistry; Threonine / metabolism
Source: Web Of Science
Added: August 6, 2018
2004 journal article
Evaluation of the DNA Binding Tendencies of the Transition State Regulator AbrB†
Biochemistry, 43(51), 16106–16118.
MeSH headings : Bacillus subtilis / metabolism; Circular Dichroism; DNA / chemistry; DNA / metabolism; Kinetics; Protein Binding / physiology; Spectrometry, Mass, Electrospray Ionization; Transcription Factors / chemistry; Transcription Factors / metabolism
Sources: Crossref, Web Of Science
Added: August 6, 2018
2004 journal article
Global Analysis of the Membrane Subproteome of Pseudomonas aeruginosaUsing Liquid Chromatography-Tandem Mass Spectrometry
Journal of Proteome Research, 3(3), 434–444.
author keywords: proteome; membrane proteins; low abundance; LC-MS/MS; affinity labeling
MeSH headings : Affinity Labels / chemistry; Amino Acid Sequence; Chromatography, Liquid; Databases, Protein; Mass Spectrometry; Membranes / metabolism; Molecular Sequence Data; Multiprotein Complexes / metabolism; Proteome; Pseudomonas aeruginosa / metabolism
Source: Crossref
Added: November 22, 2020
