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2012 journal article
NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems
PLoS Computational Biology, 8(5).
2011 journal article
Efficient alpha, beta-motif finder for identification of phenotype-related functional modules
BMC Bioinformatics, 12.
2011 journal article
On the parameterized complexity of the Multi-MCT and Multi-MCST problems
Journal of Combinatorial Optimization, 21(2), 151–158.
2010 journal article
Theoretical underpinnings for maximal clique enumeration on perturbed graphs
Theoretical Computer Science, 411(26-28), 2520–2536.
2009 journal article
A scalable, parallel algorithm for maximal clique enumeration
Journal of Parallel and Distributed Computing, 69(4), 417–428.
2009 journal article
On parameterized complexity of the Multi-MCS problem
Theoretical Computer Science, 410(21-23), 2024–2032.
conference paper
Coupling graph perturbation theory with scalable parallel algorithms for large-scale enumeration of maximal cliques in biological graphs - art. no. 012053
Samatova, N. F., Schmidt, M. C., Hendrix, W., Breimyer, P., Thomas, K., & Park, B. H. Scidac 2008: Scientific discovery through advanced computing, 125, 12053–12053.