Michael D. Purugganan

Candidate Gene Association Mapping of Arabidopsis Flowering Time

GENETICS, 183(1), 325–335.

Complex Rearrangements Lead to Novel Chimeric Gene Fusion Polymorphisms at the Arabidopsis thaliana MAF2-5 Flowering Time Gene Cluster

MOLECULAR BIOLOGY AND EVOLUTION, 26(3), 699–711.

Functional and geographical differentiation of candidate balanced polymorphisms in Arabidopsis thaliana

MOLECULAR ECOLOGY, 18(13), 2844–2855.

Darwinian selection on a selfing locus (vol 306, pg 2081, 2004)

Science, Vol. 320, pp. 176–176.

Independent origins of self-compatibility in Arabidopsis thaliana

MOLECULAR ECOLOGY, 17(2), 704–714.

Sequence variation of microRNAs and their binding sites in Arabidopsis

PLANT PHYSIOLOGY, 146(4), 1974–1982.

Diversity and divergence patterns in regulatory genes suggest differential gene flow in recently derived species of the Hawaiian silversword alliance adaptive radiation (Asteraceae)

MOLECULAR ECOLOGY, 16(19), 3995–4013.

Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae)

Genetica, 130(1), 19–34.

Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field

AMERICAN NATURALIST, 169(5), E141–E157.

Genetics of microenvironmental canalization in Arabidopsis thaliana

Proceedings of the National Academy of Sciences of the United States of America, 104(34), 13717–13722.

The extent of linkage disequilibrium in rice (Oryza sativa L.)

GENETICS, 177(4), 2223–2232.

The genetic architecture of shoot branching in Arabidopsis thaliana: A comparative assessment of candidate gene associations vs. quantitative trait locus mapping

GENETICS, 176(2), 1223–1236.

Comparative sequencing of plant genomes: Choices to make

Plant Cell, 18(5), 1100–1104.

Genomic variation in rice: Genesis of highly polymorphic linkage blocks during domestication

PLOS GENETICS, 2(11), 1824–1833.

Molecular population genetics and phenotypic diversification of two populations of the thermophilic cyanobacterium Mastigocladus laminosus

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(4), 2793–2800.

Selection under domestication: Evidence for a sweep in the rice Waxy genomic region

GENETICS, 173(2), 975–983.

The molecular genetic basis of plant adaptation

[Review of ]. American Journal of Botany, 93(7), 953–962.

Adaptive radiation and regulatory gene evolution in the Hawaiian silversword alliance (Asteraceae)

Annals of the Missouri Botanical Garden, 92(1), 28–35.

Comparative plant genomics. Frontiers and prospects

Caicedo, A. L., & Purugganan, M. D. (2005, June). PLANT PHYSIOLOGY, Vol. 138, pp. 545–547.

Evolutionary and ecological genomics of arabidopsis

PLANT PHYSIOLOGY, 138(2), 578–584.

High-diversity genes in the Arabidopsis genome

GENETICS, 170(4), 1897–1911.

Molecular population genetics of redundant floral-regulatory genes in Arabidopsis thaliana

Molecular Biology and Evolution, 22(1), 91–103.

The evolutionary dynamics of plant duplicate genes

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 8(2), 122–128.

The molecular population genetics of the Tomato spotted wilt virus (TSWV) genome

MOLECULAR ECOLOGY, 14(1), 53–66.

Vernalization sensitivity in Arabidopsis thaliana (brassicaceae): The effects of latitude and FLC variation

AMERICAN JOURNAL OF BOTANY, 92(10), 1701–1707.

A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 101(13), 4712–4717.

Darwinian selection on a selfing locus (Retracted Article. See vol 320, pg 176, 2008)

Shimizu, K. K., Cork, J. M., Caicedo, A. L., Mays, C. A., Moore, R. C., Olsen, K. M., … Purugganan, M. D. (2004, December 17). SCIENCE, Vol. 306, pp. 2081–2084.

Epialleles via DNA methylation: consequences for plant evolution

Kalisz, S., & Purugganan, M. D. (2004, June). TRENDS IN ECOLOGY & EVOLUTION, Vol. 19, pp. 309–314.

Epistatic interaction between Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in a life history trait

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 101(44), 15670–15675.

Heterogeneous evolution of the Myc-like Anthocyanin regulatory gene and its phylogenetic utility in Cornus L. (Cornaceae)

MOLECULAR PHYLOGENETICS AND EVOLUTION, 33(3), 580–594.

Linkage disequilibrium mapping of Arabidopsis CRY2 flowering time alleles

GENETICS, 167(3), 1361–1369.

The evolution of molecular genetic pathways and networks

[Review of ]. BIOESSAYS, 26(5), 479–484.

The evolution of plant development

[Review of ]. AMERICAN JOURNAL OF BOTANY, 91(10), 1726–1741.

Candidate genes, quantitative trait loci, and functional trait evolution in plants

[Review of ]. INTERNATIONAL JOURNAL OF PLANT SCIENCES, 164(3), S7–S20.

Genotype-environment interactions at quantitative trait loci affecting inflorescence development in Arabidopsis thaliana

Genetics, 165(1), 353–365.

Heterogeneous selection at specific loci in natural environments in Arabidopsis thaliana

Genetics, 165(1), 321–329.

Intron and polypeptide evolution of conserved NPA to NPA motif regions in plant aquaporins

Journal of the American Society for Horticultural Science, 128(4), 591–597.

Merging ecology, molecular evolution, and functional genetics

Purugganan, M., & Gibson, G. (2003, May). MOLECULAR ECOLOGY, Vol. 12, pp. 1109–1112.

Michael Purugganan

Nature, 421(6919), 117.

Molecular population genetics of the Arabidopsis CLAVATA2 region: The genomic scale of variation and selection in a selfing species

Genetics, 163(3), 1083–1095.

Patterns of nucleotide variation in homoeologous regulatory genes in the allotetraploid Hawaiian silversword alliance (Asteraceae)

MOLECULAR ECOLOGY, 12(5), 1301–1313.

Selection on rapidly evolving proteins in the Arabidopsis genome

Genetics, 163(2), 723–733.

The early stages of duplicate gene evolution

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100(26), 15682–15687.

Contrasting evolutionary forces in the Arabidopsis thaliana floral developmental pathway

Genetics, 160(4), 1641–1650.

GAI homologues in the Hawaiian silversword alliance (Asteraceae-Madiinae): Molecular evolution of growth regulators in a rapidly diversifying plant lineage

MOLECULAR BIOLOGY AND EVOLUTION, 19(9), 1563–1574.

Linking molecular insight and ecological research

Jackson, R. B., Linder, C. R., Lynch, M., Purugganan, M., Somerville, S., & Thayer, S. S. (2002, September). TRENDS IN ECOLOGY & EVOLUTION, Vol. 17, pp. 409–414.

Molecular evidence on the origin and evolution of glutinous rice

Genetics, 162(2), 941–950.

Novel loci control variation in reproductive timing in Arabidopsis thaliana in natural environments

Genetics, 162(4), 1875–1884.

Quantitative trait loci for inflorescence development in Arabidopsis thaliana

Genetics, 160(3), 1133–1151.

The cost of inbreeding in Arabidopsis

NATURE, 416(6880), 531–534.

The genetics of plant morphological evolution

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 5(1), 49–55.

Accelerated regulatory gene evolution in an adaptive radiation

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 98(18), 10208–10213.

Map-based cloning of quantitative trait loci: progress and prospects

Genetical Research, 78(3), 213–218.

Interspecific evolution in plant microsatellite structure

GENE, 241(1), 101–105.

Molecular evolution of flower development

[Review of ]. TRENDS IN ECOLOGY & EVOLUTION, 15(4), 144–149.

Quantitative trait loci for floral morphology in Arabidopsis thaliana

Genetics, 156(3), 1379–1392.

The molecular population genetics of regulatory genes

[Review of ]. MOLECULAR ECOLOGY, 9(10), 1451–1461.

Variation and selection at the CAULIFLOWER floral homeotic gene accompanying the evolution of domesticated Brassica oleracea

Genetics, 155(2), 855–862.

Duplication of the Brassica oleracea APETALA1 floral homeotic gene and the evolution of domesticated cauliflower

Journal of Heredity, 90(5), 514–520.

Interspecific hybrid ancestry of a plant adaptive radiation: Allopolyploidy of the Hawaiian silversword alliance (Asteraceae) inferred from floral homeotic gene duplications

MOLECULAR BIOLOGY AND EVOLUTION, 16(8), 1105–1113.

Molecular population genetics of floral homeotic loci: departures from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana

Genetics, 151(2), 839–848.

Patterns of molecular evolution among paralogous floral homeotic genes

MOLECULAR BIOLOGY AND EVOLUTION, 16(8), 1037–1045.

Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: Nonneutral evolution and naturally occurring variation in floral homeotic function

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95(14), 8130–8134.

The molecular evolution of development

[Review of ]. BIOESSAYS, 20(9), 700–711.

The MADS-box floral homeotic gene lineages predate the origin of seed plants: Phylogenetic and molecular clock estimates

JOURNAL OF MOLECULAR EVOLUTION, 45(4), 392–396.

The evolution of the conserved ATPase domain (CAD): Reconstructing the history of an ancient protein module

JOURNAL OF MOLECULAR EVOLUTION, 45(5), 549–563.