Michael D. Purugganan

Ehrenreich, I. M., Hanzawa, Y., Chou, L., Roe, J. L., Kover, P. X., & Purugganan, M. D. (2009). Candidate Gene Association Mapping of Arabidopsis Flowering Time. GENETICS, 183(1), 325–335. https://doi.org/10.1534/genetics.109.105189

Reininga, J. M., Nielsen, D., & Purugganan, M. D. (2009). Functional and geographical differentiation of candidate balanced polymorphisms in Arabidopsis thaliana. MOLECULAR ECOLOGY, 18(13), 2844–2855. https://doi.org/10.1111/j.1365-294X.2009.04206.x

Caicedo, A. L., Richards, C., Ehrenreich, I. M., & Purugganan, M. D. (2009). Complex Rearrangements Lead to Novel Chimeric Gene Fusion Polymorphisms at the Arabidopsis thaliana MAF2-5 Flowering Time Gene Cluster. MOLECULAR BIOLOGY AND EVOLUTION, 26(3), 699–711. https://doi.org/10.1093/molbev/msn300

Shimizu, K. K., Reininga, J. M., Caicedo, A. L., Mays, C. A., Moore, R. C., Olsen, K. M., … Purugganan, M. D. (2008). Darwinian selection on a selfing locus (vol 306, pg 2081, 2004). Science, Vol. 320, pp. 176–176.

Ehrenreich, I. M., & Purugganan, M. D. (2008). Sequence variation of microRNAs and their binding sites in Arabidopsis. PLANT PHYSIOLOGY, 146(4), 1974–1982. https://doi.org/10.1104/pp.108.116582

Lawton-Rauh, A., Robichaux, R. H., & Purugganan, M. D. (2007). Diversity and divergence patterns in regulatory genes suggest differential gene flow in recently derived species of the Hawaiian silversword alliance adaptive radiation (Asteraceae). MOLECULAR ECOLOGY, 16(19), 3995–4013. https://doi.org/10.1111/j.1365-294X.2007.03445.x

Korves, T. M., Schmid, K. J., Caicedo, A. L., Mays, C., Stinchcombe, J. R., Purugganan, M. D., & Schmitt, J. (2007). Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field. AMERICAN NATURALIST, 169(5), E141–E157. https://doi.org/10.1086/513111

Hall, M. C., Dworkin, I., Ungerer, M. C., & Purugganan, M. (2007). Genetics of microenvironmental canalization in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America, 104(34), 13717–13722.

Shimizu, K. K., Shimizu-Inatsugi, R., Tsuchimatsu, T., & Purugganan, M. D. (2008). Independent origins of self-compatibility in Arabidopsis thaliana. MOLECULAR ECOLOGY, 17(2), 704–714. https://doi.org/10.1111/j.1365-294X.2007.03605.x

Mather, K. A., Caicedo, A. L., Polato, N. R., Olsen, K. M., McCouch, S., & Purugganan, M. D. (2007). The extent of linkage disequilibrium in rice (Oryza sativa L.). GENETICS, 177(4), 2223–2232. https://doi.org/10.1534/genetics.107.079616

Ehrenreich, I. M., Stafford, P. A., & Purugganan, M. D. (2007). The genetic architecture of shoot branching in Arabidopsis thaliana: A comparative assessment of candidate gene associations vs. quantitative trait locus mapping. GENETICS, 176(2), 1223–1236. https://doi.org/10.1534/genetics.107.071928

Jackson, S., Rounsley, S., & Purugganan, M. (2006). Comparative sequencing of plant genomes: Choices to make. Plant Cell, 18(5), 1100–1104.

Fan, C., Xiang, Q.-Y. (J., Remington, D. L., Purugganan, M. D., & Wiegmann, B. M. (2007). Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae). Genetica, 130(1), 19–34. https://doi.org/10.1007/s10709-006-0016-3

Tang, T., Lu, J., Huang, J., He, J., McCouch, S. R., Shen, Y., … Wu, C.-I. (2006). Genomic variation in rice: Genesis of highly polymorphic linkage blocks during domestication. PLOS GENETICS, 2(11), 1824–1833. https://doi.org/10.1371/journal.pgen.0020199

Miller, SR, Purugganan, M. D., & Curtis, S. E. (2006). Molecular population genetics and phenotypic diversification of two populations of the thermophilic cyanobacterium Mastigocladus laminosus. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(4), 2793–2800. https://doi.org/10.1128/AEM.72.4.2793-2800.2006

Olsen, K. M., Caicedo, A. L., Polato, N., McClung, A., McCouch, S., & Purugganan, M. D. (2006). Selection under domestication: Evidence for a sweep in the rice Waxy genomic region. GENETICS, 173(2), 975–983. https://doi.org/10.1534/genetics.106.056473

Ehrenreich, I. M., & Purugganan, M. D. (2006). [Review of The  molecular genetic basis of plant adaptation]. American Journal of Botany, 93(7), 953–962.

Purugganan, M. D., & Robichaux, R. H. (2005). Adaptive radiation and regulatory gene evolution in the Hawaiian silversword alliance (Asteraceae). Annals of the Missouri Botanical Garden, 92(1), 28–35.

Caicedo, A. L., & Purugganan, M. D. (2005, June). Comparative plant genomics. Frontiers and prospects. PLANT PHYSIOLOGY, Vol. 138, pp. 545–547. https://doi.org/10.1104/pp.104.900148

Shimizu, K. K., & Purugganan, M. D. (2005). Evolutionary and ecological genomics of arabidopsis. PLANT PHYSIOLOGY, 138(2), 578–584. https://doi.org/10.1104/pp.105.061655

Cork, J. M., & Purugganan, M. D. (2005). High-diversity genes in the Arabidopsis genome. GENETICS, 170(4), 1897–1911. https://doi.org/10.1534/genetics.104.036152

Moore, R. C., Grant, S. R., & Purugganan, M. D. (2005). Molecular population genetics of redundant floral-regulatory genes in Arabidopsis thaliana. Molecular Biology and Evolution, 22(1), 91–103.

Moore, R. C., & Purugganan, M. D. (2005). [Review of The evolutionary dynamics of plant duplicate genes]. CURRENT OPINION IN PLANT BIOLOGY, 8(2), 122–128. https://doi.org/10.1016/j.pbi.2004.12.001

Stinchcombe, JR, Caicedo, A. L., Hopkins, R., Mays, C., Boyd, E. W., Purugganan, M. D., & Schmitt, J. (2005). Vernalization sensitivity in Arabidopsis thaliana (brassicaceae): The effects of latitude and FLC variation. AMERICAN JOURNAL OF BOTANY, 92(10), 1701–1707. https://doi.org/10.3732/ajb.92.10.1701

Stinchcombe, JR, Weinig, C., Ungerer, M., Olsen, K. M., Mays, C., Halldorsdottir, S. S., … Schmitt, J. (2004). A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 101(13), 4712–4717. https://doi.org/10.1073/pnas.0306401101

Shimizu, K. K., Cork, J. M., Caicedo, A. L., Mays, C. A., Moore, R. C., Olsen, K. M., … Purugganan, M. D. (2004, December 17). Darwinian selection on a selfing locus (Retracted Article. See vol 320, pg 176, 2008). SCIENCE, Vol. 306, pp. 2081–2084. https://doi.org/10.1126/science.1103776

Kalisz, S., & Purugganan, M. D. (2004, June). Epialleles via DNA methylation: consequences for plant evolution. TRENDS IN ECOLOGY & EVOLUTION, Vol. 19, pp. 309–314. https://doi.org/10.1016/j.tree.2004.03.034

Caicedo, A. L., Stinchcombe, JR, Olsen, K. M., Schmitt, J., & Purugganan, M. D. (2004). Epistatic interaction between Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in a life history trait. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 101(44), 15670–15675. https://doi.org/10.1073/pnas.0406232101

Fan, C. Z., Purugganan, M. D., Thomas, D. T., Wiegmann, B. M., & Xiang, Q. Y. (2004). Heterogeneous evolution of the Myc-like Anthocyanin regulatory gene and its phylogenetic utility in Cornus L. (Cornaceae). MOLECULAR PHYLOGENETICS AND EVOLUTION, 33(3), 580–594. https://doi.org/10.1016/j.ympev.2004.08.002

Olsen, K. M., Halldorsdottir, S. S., Stinchcombe, JR, Weinig, C., Schmitt, J., & Purugganan, M. D. (2004). Linkage disequilibrium mapping of Arabidopsis CRY2 flowering time alleles. GENETICS, 167(3), 1361–1369. https://doi.org/10.1534/genetics.103.024950

Cork, J. M., & Purugganan, M. D. (2004). [Review of The evolution of molecular genetic pathways and networks]. BIOESSAYS, 26(5), 479–484. https://doi.org/10.1002/bies.20026

Friedman, W. E., Moore, R. C., & Purugganan, M. D. (2004). [Review of The evolution of plant development]. AMERICAN JOURNAL OF BOTANY, 91(10), 1726–1741. https://doi.org/10.3732/ajb.91.10.1726

Tsompana, M., Abad, J., Purugganan, M., & Moyer, J. W. (2005). The molecular population genetics of the Tomato spotted wilt virus (TSWV) genome. MOLECULAR ECOLOGY, 14(1), 53–66. https://doi.org/10.1111/j.1365-294X.2004.02392.x

Remington, D. L., & Purugganan, M. D. (2003). [Review of Candidate genes, quantitative trait loci, and functional trait evolution in plants]. INTERNATIONAL JOURNAL OF PLANT SCIENCES, 164(3), S7–S20. https://doi.org/10.1086/367812

Ungerer, M. C., Halldorsdottir, S. S., Purugganan, M. D., & Mackay, T. F. C. (2003). Genotype-environment interactions at quantitative trait loci affecting inflorescence development in Arabidopsis thaliana. Genetics, 165(1), 353–365.

Weinig, C., Dorn, L. A., Kane, N. C., German, Z. M., Hahdorsdottir, S. S., Ungerer, M. C., … Schmitt, J. (2003). Heterogeneous selection at specific loci in natural environments in Arabidopsis thaliana. Genetics, 165(1), 321–329.

Xie, J. H., Wehner, T. C., Wollenberg, K., Purugganan, M. D., & Conkling, M. A. (2003). Intron and polypeptide evolution of conserved NPA to NPA motif regions in plant aquaporins. Journal of the American Society for Horticultural Science, 128(4), 591–597.

Purugganan, M., & Gibson, G. (2003, May). Merging ecology, molecular evolution, and functional genetics. MOLECULAR ECOLOGY, Vol. 12, pp. 1109–1112. https://doi.org/10.1046/j.1365-294X.2003.01851.x

Purugganan, M. (2003). Michael Purugganan. Nature, 421(6919), 117. https://doi.org/10.1038/421117a

Shepard, K. A., & Purugganan, M. D. (2003). Molecular population genetics of the Arabidopsis CLAVATA2 region: The genomic scale of variation and selection in a selfing species. Genetics, 163(3), 1083–1095.

Lawton-Rauh, A., Robichaux, R. H., & Purugganan, M. D. (2003). Patterns of nucleotide variation in homoeologous regulatory genes in the allotetraploid Hawaiian silversword alliance (Asteraceae). MOLECULAR ECOLOGY, 12(5), 1301–1313. https://doi.org/10.1046/j.1365-294X.2003.01814.x

Barrier, M., Bustamante, C. D., Yu, J. Y., & Purugganan, M. D. (2003). Selection on rapidly evolving proteins in the Arabidopsis genome. Genetics, 163(2), 723–733.

Moore, R. C., & Purugganan, M. D. (2003). The early stages of duplicate gene evolution. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100(26), 15682–15687. https://doi.org/10.1073/pnas.2535513100

Olsen, K. M., Womack, A., Garrett, A. R., Suddith, J. I., & Purugganan, M. D. (2002). Contrasting evolutionary forces in the Arabidopsis thaliana floral developmental pathway. Genetics, 160(4), 1641–1650.

Remington, D. L., & Purugganan, M. D. (2002). GAI homologues in the Hawaiian silversword alliance (Asteraceae-Madiinae): Molecular evolution of growth regulators in a rapidly diversifying plant lineage. MOLECULAR BIOLOGY AND EVOLUTION, 19(9), 1563–1574. https://doi.org/10.1093/oxfordjournals.molbev.a004218

Jackson, R. B., Linder, C. R., Lynch, M., Purugganan, M., Somerville, S., & Thayer, S. S. (2002, September). Linking molecular insight and ecological research. TRENDS IN ECOLOGY & EVOLUTION, Vol. 17, pp. 409–414. https://doi.org/10.1016/S0169-5347(02)02571-5

Olsen, K. M., & Purugganan, M. D. (2002). Molecular evidence on the origin and evolution of glutinous rice. Genetics, 162(2), 941–950.

Weinig, C., Ungerer, M. C., Dorn, L. A., Kane, N. C., Toyonaga, Y., Halldorsdottir, S. S., … Schmitt, J. (2002). Novel loci control variation in reproductive timing in Arabidopsis thaliana in natural environments. Genetics, 162(4), 1875–1884.

Ungerer, M. C., Halldorsdottir, S. S., Modliszewski, J. L., Mackay, T. F. C., & Purugganan, M. D. (2002). Quantitative trait loci for inflorescence development in Arabidopsis thaliana. Genetics, 160(3), 1133–1151.

Bustamante, C. D., Nielsen, R., Sawyer, S. A., Olsen, K. M., Purugganan, M. D., & Hartl, D. L. (2002). The cost of inbreeding in Arabidopsis. NATURE, 416(6880), 531–534. https://doi.org/10.1038/416531a

Shepard, K. A., & Purugganan, M. D. (2002). [Review of The genetics of plant morphological evolution]. CURRENT OPINION IN PLANT BIOLOGY, 5(1), 49–55. https://doi.org/10.1016/S1369-5266(01)00227-8

Barrier, M., Robichaux, R. H., & Purugganan, M. D. (2001). Accelerated regulatory gene evolution in an adaptive radiation. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 98(18), 10208–10213. https://doi.org/10.1073/pnas.181257698

Remington, D. L., Ungerer, M. C., & Purugganan, M. D. (2001). Map-based cloning of quantitative trait loci: progress and prospects. Genetical Research, 78(3), 213–218.

Barrier, M., Friar, E., Robichaux, R., & Purugganan, M. (2000). Interspecific evolution in plant microsatellite structure. GENE, 241(1), 101–105. https://doi.org/10.1016/S0378-1119(99)00463-1

Lawton-Rauh, A. L., Alvarez-Buylla, E. R., & Purugganan, M. D. (2000). [Review of Molecular evolution of flower development]. TRENDS IN ECOLOGY & EVOLUTION, 15(4), 144–149. https://doi.org/10.1016/S0169-5347(99)01816-9

Juenger, T., Purugganan, M., & MacKay, T. F. C. (2000). Quantitative trait loci for floral morphology in Arabidopsis thaliana. Genetics, 156(3), 1379–1392.

Purugganan, M. D. (2000). [Review of The molecular population genetics of regulatory genes]. MOLECULAR ECOLOGY, 9(10), 1451–1461. https://doi.org/10.1046/j.1365-294x.2000.01016.x

Purugganan, M. D., Boyles, A. L., & Suddith, J. I. (2000). Variation and selection at the CAULIFLOWER floral homeotic gene accompanying the evolution of domesticated Brassica oleracea. Genetics, 155(2), 855–862.

Lowman, A. C., & Purugganan, M. D. (1999). Duplication of the Brassica oleracea APETALA1 floral homeotic gene and the evolution of domesticated cauliflower. Journal of Heredity, 90(5), 514–520.

Barrier, M., Baldwin, B. G., Robichaux, R. H., & Purugganan, M. D. (1999). Interspecific hybrid ancestry of a plant adaptive radiation: Allopolyploidy of the Hawaiian silversword alliance (Asteraceae) inferred from floral homeotic gene duplications. MOLECULAR BIOLOGY AND EVOLUTION, 16(8), 1105–1113. https://doi.org/10.1093/oxfordjournals.molbev.a026200

Purugganan, M. D., & Suddith, J. I. (1999). Molecular population genetics of floral homeotic loci: departures from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana. Genetics, 151(2), 839–848.

Lawton-Rauh, A. L., Buckler, E. S., IV, & Purugganan, M. D. (1999). Patterns of molecular evolution among paralogous floral homeotic genes. MOLECULAR BIOLOGY AND EVOLUTION, 16(8), 1037–1045. https://doi.org/10.1093/oxfordjournals.molbev.a026193

Purugganan, M. D., & Suddith, J. I. (1998). Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: Nonneutral evolution and naturally occurring variation in floral homeotic function. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95(14), 8130–8134. https://doi.org/10.1073/pnas.95.14.8130

Purugganan, M. D. (1998). [Review of The molecular evolution of development]. BIOESSAYS, 20(9), 700–711. https://doi.org/10.1002/(SICI)1521-1878(199809)20:9<700::AID-BIES3>3.0.CO;2-K

Purugganan, M. D. (1997). The MADS-box floral homeotic gene lineages predate the origin of seed plants: Phylogenetic and molecular clock estimates. JOURNAL OF MOLECULAR EVOLUTION, 45(4), 392–396. https://doi.org/10.1007/PL00006244

Swaffield, J. C., & Purugganan, M. D. (1997). The evolution of the conserved ATPase domain (CAD): Reconstructing the history of an ancient protein module. JOURNAL OF MOLECULAR EVOLUTION, 45(5), 549–563. https://doi.org/10.1007/PL00006259