Michael S. Bereman

Works (50)

Updated: July 17th, 2023 21:14
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2022 review

ALSUntangled #60: light therapy

[Review of ]. AMYOTROPHIC LATERAL SCLEROSIS AND FRONTOTEMPORAL DEGENERATION, 23(3-4), 315–319.

By: R. Bedlack*, P. Barkhaus *, B. Barnes*, M. Bereman n, T. Bertorini*, G. Carter, J. Crayle*, S. Kihuwa-Mani* ...

co-author countries: Canada 🇨🇦 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: Light; energy; alternative therapy; epidemiology; ethics; therapy
MeSH headings : Amyotrophic Lateral Sclerosis / drug therapy; Humans; Phototherapy
Source: Web Of Science
Added: April 26, 2021

2022 journal article

An experimental evaluation of the efficacy of perinatal sulforaphane supplementation to decrease the incidence and severity of vinclozolin-induced hypospadias in the mouse model

TOXICOLOGY AND APPLIED PHARMACOLOGY, 451.

By: C. Amato*, A. Fricke*, S. Marella*, J. Mogus *, M. Bereman n & K. McCoy*

co-author countries: United States of America 🇺🇸
author keywords: Birth defects prevention; Hypospadias; Mechanisms of resilience; Preventive toxicology; Sulforaphane; Vinclozolin
MeSH headings : Animals; Dietary Supplements; Disease Models, Animal; Environmental Pollutants / adverse effects; Female; Humans; Hypospadias / chemically induced; Hypospadias / prevention & control; Incidence; Isothiocyanates / pharmacology; Male; Mice; NF-E2-Related Factor 2 / genetics; Oxazoles; Pregnancy; Sulfoxides
Source: Web Of Science
Added: January 3, 2023

2022 article

The Cyanotoxin 2,4-DAB Reduces Viability and Causes Behavioral and Molecular Dysfunctions Associated with Neurodegeneration in Larval Zebrafish

Martin, R. M., Bereman, M. S., & Marsden, K. C. (2022, January 14). NEUROTOXICITY RESEARCH, Vol. 40.

By: R. Martin n, M. Bereman n & K. Marsden n 

co-author countries: United States of America 🇺🇸
author keywords: Cyanotoxins; Mixtures; 2,4-DAB; Zebrafish; Behavior; Proteomics
MeSH headings : Amino Acids, Diamino / toxicity; Animals; Cyanobacteria; Cyanobacteria Toxins; Isomerism; Larva; Neurotoxicity Syndromes; Neurotoxins / toxicity; Zebrafish
Sources: Web Of Science, ORCID
Added: January 15, 2022

2021 journal article

ALSUntangled 59: Tamoxifen THE ALSUNTANGLED GROUP

AMYOTROPHIC LATERAL SCLEROSIS AND FRONTOTEMPORAL DEGENERATION, 22(7-8), 595–598.

By: R. Bedlack*, J. Stephens, P. Barkhaus *, M. Bereman n, J. Caress *, J. Crayle*, G. Pattee *, T. Heiman Patterson* ...

co-author countries: Canada 🇨🇦 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: Tamoxifen; ALSUntangled; off-label treatment; trials; ethics; therapy; clinical trials
MeSH headings : Amyotrophic Lateral Sclerosis / drug therapy; Humans; Tamoxifen / therapeutic use
Source: Web Of Science
Added: March 15, 2021

2021 journal article

BMAA and MCLR Interact to Modulate Behavior and Exacerbate Molecular Changes Related to Neurodegeneration in Larval Zebrafish

TOXICOLOGICAL SCIENCES, 179(2), 251–261.

By: R. Martin n, M. Bereman n & K. Marsden n 

co-author countries: United States of America 🇺🇸
author keywords: cyanotoxins; mixtures; zebrafish; behavior; proteomics
MeSH headings : Amino Acids, Diamino / toxicity; Animals; Cyanobacteria Toxins; Larva; Proteomics; Zebrafish
Sources: Web Of Science, ORCID
Added: December 15, 2020

2021 journal article

Toxicant exposure during pregnancy increases protective proteins in the dam and a sexually dimorphic response in the fetus

TOXICOLOGY AND APPLIED PHARMACOLOGY, 413.

By: A. Rister*, C. Amato*, T. Nash n, M. McCoy *, M. Bereman n & K. McCoy*

co-author countries: United States of America 🇺🇸
author keywords: Vinclozolin; Endocrine Disrupting Compounds; Proteomics; Detoxification; Liver
MeSH headings : Adenosine Triphosphate / metabolism; Androgen Antagonists / metabolism; Androgen Antagonists / toxicity; Animals; Endocrine Disruptors / metabolism; Endocrine Disruptors / toxicity; Female; Liver / drug effects; Liver / embryology; Liver / metabolism; Male; Maternal Exposure; Metabolic Detoxication, Phase I; Metabolic Detoxication, Phase II; Mice; Oxazoles / metabolism; Oxazoles / toxicity; Oxidative Phosphorylation; Pregnancy; Proteome; Proteomics; Sex Characteristics; Sex Factors
Source: Web Of Science
Added: March 15, 2021

2020 journal article

Metabolite Profiling Reveals Predictive Biomarkers and the Absence of beta-Methyl Amino-L-alanine in Plasma from Individuals Diagnosed with Amyotrophic Lateral Sclerosis

JOURNAL OF PROTEOME RESEARCH, 19(8), 3276–3285.

By: M. Bereman n, K. Kirkwood n, T. Sabaretnam *, S. Furlong *, D. Rowe *, G. Guillemin *, A. Mellinger n, D. Muddiman n 

co-author countries: Australia 🇦🇺 United States of America 🇺🇸
author keywords: amyotrophic lateral sclerosis; biomarkers; BMAA; CZE-MS/MS; metabolites; plasma
MeSH headings : Alanine; Amyotrophic Lateral Sclerosis / diagnosis; Biomarkers; Female; Humans; Male; Mass Spectrometry; Metabolome
Sources: Web Of Science, ORCID
Added: September 14, 2020

2020 journal article

Peptide variability and signatures associated with disease progression in CSF collected longitudinally from ALS patients

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 412(22), 5465–5475.

By: A. Mellinger n, E. Griffith n & M. Bereman n

co-author countries: United States of America 🇺🇸
author keywords: Amyotrophic lateral sclerosis; Cerebrospinal fluid; Longitudinal modeling; Proteomics; Biomarker
MeSH headings : Aged; Amyotrophic Lateral Sclerosis / cerebrospinal fluid; Chromatography, Liquid / methods; Disease Progression; Female; Humans; Longitudinal Studies; Male; Middle Aged; Peptides / cerebrospinal fluid; Proteomics; Tandem Mass Spectrometry / methods
Source: Web Of Science
Added: July 13, 2020

2019 journal article

Leveraging proteomics to compare submerged versus air-liquid interface carbon nanotube exposure to a 3D lung cell model

TOXICOLOGY IN VITRO, 54, 58–66.

By: G. Hilton n, H. Barosova*, A. Petri-Fink *, B. Rothen-Rutishauser * & M. Bereman n

co-author countries: Switzerland 🇨🇭 United States of America 🇺🇸
author keywords: Carbon nanotubes; Lung cell co-cultures; Air-liquid interface; In vitro assay development; Label-free proteomics; Toxicoproteomics
MeSH headings : Cell Line; Coculture Techniques; Epithelial Cells / drug effects; Epithelial Cells / metabolism; Fibroblasts / drug effects; Fibroblasts / metabolism; Humans; Lung / cytology; Macrophages / drug effects; Macrophages / metabolism; Nanotubes, Carbon / toxicity; Proteomics; Toxicity Tests
Source: Web Of Science
Added: January 14, 2019

2019 review

Maternal vitamin D deficiency and developmental origins of health and disease (DOHaD)

[Review of ]. JOURNAL OF ENDOCRINOLOGY, 241(2), R65–R80.

By: F. Ideraabdullah *, A. Belenchia*, C. Rosenfeld*, S. Kullman n , M. Knuth  n, D. Mahapatra n, M. Bereman n, E. Levinlo, C. Peterson*

co-author countries: United States of America 🇺🇸
author keywords: vitamin D deficiency; DOHAD; metabolic disorders; autism; neurobehavioral disorders; animal models
Sources: Web Of Science, ORCID
Added: June 17, 2019

2019 journal article

Mixture designs to investigate adverse effects upon co-exposure to environmental cyanotoxins

Toxicology, 421, 74–83.

By: R. Martin n, J. Stallrich n & M. Bereman n

co-author countries: United States of America 🇺🇸
author keywords: Cyanotoxins; Mixture design; Interaction; Environmental exposure; Proteomics
MeSH headings : Animals; Bacterial Toxins / toxicity; Cell Line; Cell Survival / drug effects; Cyanobacteria; Drug Interactions; Mice; No-Observed-Adverse-Effect Level; Proteome / drug effects; Risk Assessment / methods; Toxicity Tests / methods
Sources: Web Of Science, Crossref
Added: April 20, 2020

2018 journal article

A novel integrated strategy for the detection and quantification of the neurotoxin beta-N-methylamino-l-alanine in environmental samples

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 410(10), 2597–2605.

By: J. Beri n, K. Kirkwood n, D. Muddiman n  & M. Bereman n

co-author countries: United States of America 🇺🇸
author keywords: BMAA; CZE; Isomer separation; Quantification; HRAM MS/MS; Seafood
MeSH headings : Amino Acids, Diamino / analysis; Animals; Cyanobacteria Toxins; Environmental Monitoring / methods; Environmental Pollutants / analysis; Fishes / metabolism; Food Analysis / methods; Humans; Limit of Detection; Neurotoxins / analysis; Seafood / analysis; Tandem Mass Spectrometry / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Machine Learning Reveals Protein Signatures in CSF and Plasma Fluids of Clinical Value for ALS

SCIENTIFIC REPORTS, 8(1).

By: M. Bereman n, J. Beri n, J. Enders n  & T. Nash n

co-author countries: United States of America 🇺🇸

Contributors: M. Bereman n, J. Beri n, J. Enders n  & T. Nash n

MeSH headings : Amyotrophic Lateral Sclerosis / blood; Amyotrophic Lateral Sclerosis / cerebrospinal fluid; Amyotrophic Lateral Sclerosis / metabolism; Humans; Machine Learning; Multivariate Analysis; Proteomics
Sources: Web Of Science, ORCID
Added: November 19, 2018

2017 journal article

Acetylation-induced TDP-43 pathology is suppressed by an HSF1-dependent chaperone program

Nature Communications, 8(1).

By: P. Wang, C. Wander, C. Yuan *, M. Bereman n & T. Cohen

co-author countries: United States of America 🇺🇸
MeSH headings : Acetylation; Animals; DNA-Binding Proteins / metabolism; Heat Shock Transcription Factors / genetics; Heat Shock Transcription Factors / metabolism; Humans; Mice; Molecular Chaperones; Muscle, Skeletal / metabolism; Protein Processing, Post-Translational; Protein Refolding; TDP-43 Proteinopathies / metabolism
Sources: Crossref, NC State University Libraries
Added: August 6, 2018

2017 journal article

Development of selected reaction monitoring methods to systematically quantify kinase abundance and phosphorylation stoichiometry in human samples

Kinase Signaling Networks, 1636, 353–369.

By: K. Beck, N. Camp, M. Bereman, J. Bollinger, J. Egertson, M. MacCoss, A. Wolf-Yadlin

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Exposure to BMAA mirrors molecular processes linked to neurodegenerative disease

PROTEOMICS, 17(17-18), 1700161.

By: J. Beri n, T. Nash n, R. Martin n & M. Bereman n

co-author countries: United States of America 🇺🇸
author keywords: Amyotrophic lateral sclerosis; BMAA; Exposures; LC-MS; MS; Neurodegeneration
MeSH headings : Amino Acids, Diamino / toxicity; Amyotrophic Lateral Sclerosis / chemically induced; Amyotrophic Lateral Sclerosis / metabolism; Amyotrophic Lateral Sclerosis / pathology; Animals; Cell Line; Cyanobacteria Toxins; Diet / adverse effects; Excitatory Amino Acid Agonists / toxicity; Gene Expression Regulation / drug effects; Mice; Motor Neurons / metabolism; Motor Neurons / pathology; Neuroblastoma / metabolism; Neuroblastoma / pathology
Sources: Crossref, NC State University Libraries
Added: August 6, 2018

2017 journal article

MSstatsQC: Longitudinal System Suitability Monitoring and Quality Control for Targeted Proteomic Experiments

MOLECULAR & CELLULAR PROTEOMICS, 16(7), 1335–1347.

By: E. Dogu *, S. Mohammad-Taheri*, S. Abbatiello *, M. Bereman n, B. MacLean *, B. Schilling *, O. Vitek *

co-author countries: Türkiye 🇹🇷 United States of America 🇺🇸
MeSH headings : Humans; Internet; Mass Spectrometry; Peptides / analysis; Proteomics / standards; Quality Control; Software
Source: Web Of Science
Added: August 6, 2018

2017 journal article

Mapping differential cellular protein response of mouse alveolar epithelial cells to multi-walled carbon nanotubes as a function of atomic layer deposition coating

NANOTOXICOLOGY, 11(3), 313–326.

By: G. Hilton n, A. Taylor n, S. Hussain *, E. Dandley n, E. Griffith n, S. Garantziotis *, G. Parsons n , J. Bonner n, M. Bereman n

co-author countries: United States of America 🇺🇸
author keywords: Carbon nanotube; label-free proteomics; pulmonary fibrosis; toxicoproteomics
MeSH headings : Aluminum Oxide / toxicity; Alveolar Epithelial Cells / chemistry; Alveolar Epithelial Cells / drug effects; Animals; Cells, Cultured; Mice; Nanotubes, Carbon / toxicity; Proteomics / methods; Pulmonary Fibrosis / etiology; Zinc Oxide / toxicity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Nuclear Localized LSR: A Novel Regulator of Breast Cancer Behavior and Tumorigenesis

MOLECULAR CANCER RESEARCH, 15(2), 165–178.

By: D. Reaves*, K. Hoadley *, K. Fagan-Solis*, D. Jima n, M. Bereman n, L. Thorpe*, J. Hicks*, D. McDonald* ...

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Breast Neoplasms / genetics; Breast Neoplasms / metabolism; Breast Neoplasms / pathology; Carcinogenesis / genetics; Carcinogenesis / metabolism; Carcinogenesis / pathology; Cell Transformation, Neoplastic / genetics; Cell Transformation, Neoplastic / metabolism; Cell Transformation, Neoplastic / pathology; Female; Heterografts; Humans; Mice; Receptors, LDL / biosynthesis; Receptors, LDL / genetics; Receptors, LDL / metabolism
Source: Web Of Science
Added: August 6, 2018

2016 journal article

An Automated Pipeline to Monitor System Performance in Liquid Chromatography-Tandem Mass Spectrometry Proteomic Experiments

JOURNAL OF PROTEOME RESEARCH, 15(12), 4763–4769.

By: M. Bereman*, J. Beri*, V. Sharma*, C. Nathe, J. Eckels, B. MacLean *, M. MacCoss *

co-author countries: United States of America 🇺🇸
author keywords: system suitability; process control; proteomics; tandem mass spectrometry; control charts
MeSH headings : Automation; Chromatography, Liquid / methods; Chromatography, Liquid / standards; Information Dissemination; Internet; Proteomics / methods; Tandem Mass Spectrometry / methods; Tandem Mass Spectrometry / standards; Workflow
Source: Web Of Science
Added: August 6, 2018

2016 journal article

Improving the analytical performance and versatility of paper spray mass spectrometry via paper microfluidics

ANALYST, 141(13), 4065–4073.

By: I. Murray n, G. Walker n & M. Bereman n

co-author countries: United States of America 🇺🇸
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Data-independent-acquisition mass spectrometry for identification of targeted-peptide site-specific modifications

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 407(22), 6627–6635.

By: C. Porter n & M. Bereman n

co-author countries: United States of America 🇺🇸
author keywords: Protein adducts; Toxicoproteomics; Mass spectrometry; Data-independent acquisition; Exposome
MeSH headings : Algorithms; Amino Acids / analysis; Amino Acids / chemistry; Binding Sites; Chromatography, Liquid / methods; Data Mining / methods; Databases, Protein; Peptides / analysis; Peptides / chemistry; Protein Binding; Protein Interaction Mapping / methods; Reproducibility of Results; Sensitivity and Specificity; Spectrometry, Mass, Electrospray Ionization / methods
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Reagent for Evaluating Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) Performance in Bottom-Up Proteomic Experiments

ANALYTICAL CHEMISTRY, 87(23), 11635–11640.

By: J. Beri n, M. Rosenblatt*, E. Strauss*, M. Urh * & M. Bereman n

co-author countries: United States of America 🇺🇸
MeSH headings : Amino Acids / chemistry; Chromatography, Liquid / methods; HEK293 Cells; Humans; Hydrophobic and Hydrophilic Interactions; Indicators and Reagents / chemistry; Peptides / chemical synthesis; Peptides / chemistry; Proteomics / methods; Tandem Mass Spectrometry / methods
Source: Web Of Science
Added: August 6, 2018

2015 review

Tools for monitoring system suitability in LC MS/MS centric proteomic experiments

[Review of ]. PROTEOMICS, 15(5-6), 891–902.

By: M. Bereman n

co-author countries: United States of America 🇺🇸
author keywords: Mass spectrometry; Quality control; Shewhart control charts; Statistical process control; System suitability; Technology
MeSH headings : Chromatography, Liquid / methods; Chromatography, Liquid / standards; Peptides / analysis; Peptides / chemistry; Proteins / analysis; Proteins / chemistry; Proteomics / methods; Proteomics / standards; Quality Control; Tandem Mass Spectrometry / methods; Tandem Mass Spectrometry / standards
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Toxicoproteomic analysis of pulmonary carbon nanotube exposure using LC-MS/MS

TOXICOLOGY, 329, 80–87.

By: G. Hilton n, A. Taylor n, C. McClure n, G. Parsons n , J. Bonner n & M. Bereman n

co-author countries: United States of America 🇺🇸

Contributors: G. Hilton n, A. Taylor n, C. McClure n, G. Parsons n , J. Bonner n & M. Bereman n

author keywords: Carbon nanotube; Label-free proteomics; Pulmonary fibrosis; Toxicoproteomics
MeSH headings : Acute-Phase Proteins / genetics; Acute-Phase Proteins / metabolism; Animals; Bronchoalveolar Lavage Fluid / chemistry; Chromatography, Liquid; Complement C3 / genetics; Complement C3 / metabolism; Complement C4b / genetics; Complement C4b / metabolism; Complement C9 / genetics; Complement C9 / metabolism; Histones / genetics; Histones / metabolism; Lactoferrin / genetics; Lactoferrin / metabolism; Lipocalin-2; Lipocalins / genetics; Lipocalins / metabolism; Lung / drug effects; Lung / metabolism; Mice; Mice, Inbred C57BL; Nanotubes, Carbon / chemistry; Nanotubes, Carbon / toxicity; Oncogene Proteins / genetics; Oncogene Proteins / metabolism; Peroxidase / genetics; Peroxidase / metabolism; Proteome / metabolism; Pulmonary Surfactant-Associated Protein B / genetics; Pulmonary Surfactant-Associated Protein B / metabolism; Tandem Mass Spectrometry; Toxicity Tests
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

C/EBPα regulates CRL4Cdt2-mediated degradation of p21 in response to UVB-induced DNA damage to control the G1/S checkpoint

Cell Cycle, 13(22), 3602–3610.

By: J. Hall n, M. Bereman n, A. Nepomuceno n, E. Thompson n, D. Muddiman n  & R. Smart n 

co-author countries: United States of America 🇺🇸
author keywords: C/EBP alpha; CRL4(Cdt2); G(1)/S DNA damage checkpoint; keratinocytes; p21
MeSH headings : Animals; CCAAT-Enhancer-Binding Protein-alpha / genetics; CCAAT-Enhancer-Binding Protein-alpha / metabolism; Cell Cycle Checkpoints / genetics; Cell Cycle Checkpoints / radiation effects; Cyclin-Dependent Kinase Inhibitor p21 / metabolism; DNA Damage / genetics; DNA Damage / radiation effects; G1 Phase Cell Cycle Checkpoints / genetics; Keratinocytes / metabolism; Keratinocytes / radiation effects; Mice; Nuclear Proteins / genetics; Nuclear Proteins / metabolism; Proteolysis; Ubiquitin-Protein Ligases / genetics; Ubiquitin-Protein Ligases / metabolism; Ultraviolet Rays; p21-Activated Kinases / genetics; p21-Activated Kinases / metabolism
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2014 journal article

Evidence of the Biochemical Basis of Host Virulence in the Greenbug Aphid,Schizaphis graminum(Homoptera: Aphididae)

Journal of Proteome Research, 13(4), 2094–2108.

By: P. Pinheiro *, M. Bereman*, J. Burd, M. Pals, S. Armstrong, K. Howe*, T. Thannhauser *, M. MacCoss *, S. Gray *, M. Cilia*

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸
author keywords: aphid; biotype; vector biology; insect-plant interactions; host virulence; Schizaphis graminum; greenbug; DIGE; LC-MS/MS
MeSH headings : Animals; Aphids / genetics; Aphids / microbiology; Aphids / pathogenicity; Aphids / physiology; Buchnera; Host-Parasite Interactions; Insect Proteins / analysis; Insect Proteins / classification; Insect Proteins / genetics; Insect Proteins / metabolism; Poaceae / parasitology; Proteome / analysis; Proteome / genetics; Proteome / metabolism; Proteome / physiology; Symbiosis
Source: Crossref
Added: August 28, 2020

2014 journal article

Implementation of Statistical Process Control for Proteomic Experiments Via LC MS/MS

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 25(4), 581–587.

By: M. Bereman n, R. Johnson*, J. Bollinger*, Y. Boss*, N. Shulman*, B. MacLean *, A. Hoofnagle *, M. MacCoss *

co-author countries: United States of America 🇺🇸
author keywords: Quality control; Statistical process control; Proteomics; Mass spectrometry; Shewhart control charts
MeSH headings : Chromatography, Liquid / methods; Models, Statistical; Peptides / analysis; Peptides / chemistry; Proteomics / methods; Tandem Mass Spectrometry / methods
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Development and Characterization of a Novel Plug and Play Liquid Chromatography-Mass Spectrometry (LC-MS) Source That Automates Connections between the Capillary Trap, Column, and Emitter

Molecular & Cellular Proteomics, 12(6), 1701–1708.

By: M. Bereman*, E. Hsieh *, T. Corso*, C. Van Pelt* & M. MacCoss *

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Caenorhabditis elegans / chemistry; Caenorhabditis elegans Proteins / chemistry; Caenorhabditis elegans Proteins / isolation & purification; Chromatography, Liquid / instrumentation; Chromatography, Liquid / methods; Mass Spectrometry / instrumentation; Mass Spectrometry / methods; Peptides / analysis; Proteomics / instrumentation; Proteomics / methods
Source: Crossref
Added: January 5, 2021

2012 journal article

A method to determine the kinetics of multiple proteins in human infants with respiratory distress syndrome

Analytical and Bioanalytical Chemistry, 403(8), 2397–2402.

By: M. Bereman*, D. Tomazela*, H. Heins*, M. Simonato *, P. Cogo *, A. Hamvas *, B. Patterson *, F. Cole*, M. MacCoss *

co-author countries: Italy 🇮🇹 United States of America 🇺🇸
author keywords: Protein turnover; Respiratory distress syndrome; Selected reaction monitoring; SRM; Protein kinetics; Protein metabolism
MeSH headings : Amino Acid Sequence; Complement Factor B / analysis; Complement Factor B / metabolism; Humans; Infant, Newborn; Kinetics; Mass Spectrometry / methods; Molecular Sequence Data; Protein Precursors / analysis; Protein Precursors / metabolism; Proteins / analysis; Proteins / metabolism; Proteolipids / analysis; Proteolipids / metabolism; Proteomics / methods; Pulmonary Surfactant-Associated Protein B / analysis; Pulmonary Surfactant-Associated Protein B / metabolism; Respiratory Distress Syndrome, Newborn / metabolism; Trachea / metabolism
Source: Crossref
Added: February 24, 2020

2012 journal article

De Novo Correction of Mass Measurement Error in Low Resolution Tandem MS Spectra for Shotgun Proteomics

Journal of The American Society for Mass Spectrometry, 23(12), 2075–2082.

By: J. Egertson*, J. Eng *, M. Bereman*, E. Hsieh *, G. Merrihew * & M. MacCoss *

co-author countries: United States of America 🇺🇸
author keywords: Mass spectrometry; Proteomics; Tandem mass spectrometry; Calibration; Mass measurement accuracy; Shotgun proteomics; Resolution
MeSH headings : Algorithms; Calibration; Models, Molecular; Peptide Fragments / chemistry; Peptide Mapping / methods; Proteomics / methods; Saccharomyces cerevisiae Proteins / chemistry; Sensitivity and Specificity; Tandem Mass Spectrometry / methods; Tandem Mass Spectrometry / standards
Source: Crossref
Added: February 24, 2020

2012 journal article

Effects of Column and Gradient Lengths on Peak Capacity and Peptide Identification in Nanoflow LC-MS/MS of Complex Proteomic Samples

Journal of The American Society for Mass Spectrometry, 24(1), 148–153.

By: E. Hsieh *, M. Bereman*, S. Durand, G. Valaskovic & M. MacCoss *

co-author countries: United States of America 🇺🇸
author keywords: Shotgun proteomics; Nanoflow liquid chromatography; Peak capacity
MeSH headings : Caenorhabditis elegans Proteins / analysis; Caenorhabditis elegans Proteins / chemistry; Chromatography, Liquid / instrumentation; Chromatography, Liquid / methods; Nanotechnology / instrumentation; Peptide Mapping / instrumentation; Peptide Mapping / methods; Proteome / analysis; Proteome / chemistry; Proteomics / instrumentation; Proteomics / methods; Tandem Mass Spectrometry / methods
Source: Crossref
Added: January 5, 2021

2012 journal article

Evaluation of Front-End Higher Energy Collision-Induced Dissociation on a Benchtop Dual-Pressure Linear Ion Trap Mass Spectrometer for Shotgun Proteomics

Analytical Chemistry, 84(3), 1533–1539.

By: M. Bereman*, J. Canterbury*, J. Egertson*, J. Horner*, P. Remes *, J. Schwartz *, V. Zabrouskov *, M. MacCoss *

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Caenorhabditis elegans / metabolism; Glycopeptides / analysis; Mass Spectrometry / instrumentation; Mass Spectrometry / methods; Phosphopeptides / analysis; Pressure; Proteomics / instrumentation; Software
Source: Crossref
Added: February 24, 2020

2012 journal article

Homopteran Vector Biomarkers for Efficient Circulative Plant Virus Transmission are Conserved in Multiple Aphid Species and the Whitefly Bemisia tabaci

Journal of Integrative Agriculture, 11(2), 249–262.

By: M. Cilia*, M. Bereman*, T. Fish *, M. MacCoss * & S. Gray *

co-author countries: United States of America 🇺🇸
author keywords: aphid; whitefly; Schizaphis graminum; Bemisia tabaci; Acyrthosiphon pisum; Toxoptera citricida; Myzus persicae; proteomics; biomarker; circulative transmission; begomovirus; luteovirus; geminivirus; leafhopper; selected reaction monitoring; SRM; mass spectrometry; targeted proteomics; Skyline
Source: Crossref
Added: February 24, 2020

2012 journal article

Learning Score Function Parameters for Improved Spectrum Identification in Tandem Mass Spectrometry Experiments

Journal of Proteome Research, 11(9), 4499–4508.

By: M. Spivak*, M. Bereman*, M. MacCoss * & W. Noble *

co-author countries: United States of America 🇺🇸
author keywords: machine learning; spectrum identification; shotgun proteomics
MeSH headings : Algorithms; Artificial Intelligence; Caenorhabditis elegans Proteins / chemistry; Peptide Fragments / chemistry; Peptide Mapping / methods; Reproducibility of Results; Saccharomyces cerevisiae Proteins / chemistry; Software; Tandem Mass Spectrometry / methods
Source: Crossref
Added: February 24, 2020

2012 journal article

Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline

Molecular & Cellular Proteomics, 11(5), 202–214.

By: B. Schilling *, M. Rardin*, B. MacLean *, A. Zawadzka*, B. Frewen*, M. Cusack*, D. Sorensen*, M. Bereman* ...

co-author countries: United States of America 🇺🇸
MeSH headings : Acetylation; Amino Acid Sequence; Animals; Breast Neoplasms; Calibration / standards; Cell Line, Tumor; Chromatography, High Pressure Liquid; Culture Media, Conditioned / chemistry; Female; Fourier Analysis; Humans; Mice; Mice, Knockout; Mitochondria, Liver / enzymology; Mitochondria, Muscle / metabolism; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Mapping / methods; Phosphorylation; Protein Processing, Post-Translational; Proteome / chemistry; Proteome / isolation & purification; Proteome / metabolism; Proteomics; Pyruvate Dehydrogenase Complex / chemistry; Pyruvate Dehydrogenase Complex / isolation & purification; Pyruvate Dehydrogenase Complex / metabolism; Reference Standards; Software; Tandem Mass Spectrometry / standards
Source: Crossref
Added: February 24, 2020

2012 journal article

The development of selected reaction monitoring methods for targeted proteomics via empirical refinement

PROTEOMICS, 12(8), 1134–1141.

By: M. Bereman*, B. MacLean *, D. Tomazela*, D. Liebler * & M. MacCoss *

co-author countries: United States of America 🇺🇸
author keywords: Selected reaction monitoring; Skyline; SRM assays; Targeted proteomics; Technology
MeSH headings : Amino Acid Sequence; Calibration; Humans; Infant, Newborn; Lung / physiopathology; Mass Spectrometry / methods; Mass Spectrometry / standards; Molecular Sequence Data; Peptides / analysis; Peptides / chemical synthesis; Proteomics / methods; Proteomics / standards; Pulmonary Surfactant-Associated Protein B / analysis; Reference Standards; Reproducibility of Results; Respiratory Distress Syndrome, Newborn / diagnosis; Respiratory Distress Syndrome, Newborn / physiopathology; Sensitivity and Specificity; Software
Source: Crossref
Added: February 24, 2020

2011 journal article

Comparison between procedures using SDS for shotgun proteomic analyses of complex samples

PROTEOMICS, 11(14), 2931–2935.

By: M. Bereman*, J. Egertson* & M. MacCoss *

co-author countries: United States of America 🇺🇸
author keywords: Bottom-up proteomics; Protein identifications; Sample preparation protocols; Shotgun proteomics; Sodium dodecyl sulfate; Technology
MeSH headings : Animals; Caenorhabditis elegans Proteins / analysis; HEK293 Cells / chemistry; Humans; Mass Spectrometry / methods; Peptides / analysis; Proteins / analysis; Proteomics / methods; Saccharomyces cerevisiae Proteins / analysis; Sodium Dodecyl Sulfate / chemistry; Surface-Active Agents / chemistry
Source: Crossref
Added: February 24, 2020

2011 journal article

Garrod's fourth inborn error of metabolism solved by the identification of mutations causing pentosuria

Proceedings of the National Academy of Sciences, 108(45), 18313–18317.

By: S. Pierce*, C. Spurrell *, J. Mandell, M. Lee*, S. Zeligson*, M. Bereman*, S. Stray, S. Fokstuen * ...

co-author countries: Switzerland 🇨🇭 Israel 🇮🇱 United States of America 🇺🇸
author keywords: dicarbonyl reductase; exome sequencing; glucuronic acid; history of genetics
MeSH headings : Blotting, Western; Carbohydrate Metabolism, Inborn Errors / ethnology; Carbohydrate Metabolism, Inborn Errors / genetics; DNA / genetics; Female; Humans; Jews; Male; Mutation; Pedigree; RNA, Messenger / genetics; Sugar Alcohol Dehydrogenases / deficiency; Sugar Alcohol Dehydrogenases / genetics; Xylulose / genetics
Source: Crossref
Added: February 24, 2020

2011 journal article

One-year plasma N-linked glycome intra-individual and inter-individual variability in the chicken model of spontaneous ovarian adenocarcinoma

INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 305(2-3), 79–86.

By: R. Dixon n, M. Bereman n, J. Petitte n , A. Hawkridge n & D. Muddiman n 

co-author countries: United States of America 🇺🇸
author keywords: N-linked glycans; HILIC; FTMS; Longitudinal sampling
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Increasing the hydrophobicity and electrospray response of glycans through derivatization with novel cationic hydrazides

CHEMICAL COMMUNICATIONS, 46(2), 237–239.

By: M. Bereman n, D. Comins n & D. Muddiman n 

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

The effects of abundant plasma protein depletion on global glycan profiling using NanoLC FT-ICR mass spectrometry

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 396(4), 1473–1479.

By: M. Bereman n & D. Muddiman n 

co-author countries: United States of America 🇺🇸
author keywords: HILIC; NanoLCFT-ICRMS; Glycan profiling; N-linked glycans; Protein depletion
MeSH headings : Blood Proteins / chemistry; Blood Proteins / standards; Chromatography, Liquid; Nanotechnology; Polysaccharides / chemistry; Polysaccharides / standards; Proteomics / instrumentation; Proteomics / methods; Reproducibility of Results; Spectroscopy, Fourier Transform Infrared
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Development of a Robust and High Throughput Method for Profiling N-Linked Glycans Derived from Plasma Glycoproteins by NanoLC-FTICR Mass Spectrometry

JOURNAL OF PROTEOME RESEARCH, 8(7), 3764–3770.

By: M. Bereman n, D. Young n, A. Deiters n & D. Muddiman n 

co-author countries: United States of America 🇺🇸
MeSH headings : Biomarkers, Tumor / metabolism; Blood Proteins / chemistry; Chromatography, Liquid / methods; Detergents / pharmacology; Glycoproteins / chemistry; Humans; Mass Spectrometry / methods; Microwaves; Peptides / chemistry; Polysaccharides / chemistry; Proteome; Proteomics / methods; Spectroscopy, Fourier Transform Infrared / methods; Time Factors
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Development of a nanoLC LTQ Orbitrap Mass Spectrometric Method for Profiling Glycans Derived from Plasma from Healthy, Benign Tumor Control, and Epithelial Ovarian Cancer Patients

ANALYTICAL CHEMISTRY, 81(3), 1130–1136.

By: M. Bereman n, T. Williams n  & D. Muddiman n 

co-author countries: United States of America 🇺🇸

Contributors: M. Bereman n, T. Williams n  & D. Muddiman n 

MeSH headings : Biomarkers, Tumor / blood; Biomarkers, Tumor / chemistry; Carcinoma / diagnosis; Chromatography, Liquid / methods; Female; Genital Neoplasms, Female / chemistry; Genital Neoplasms, Female / diagnosis; Glycoproteins / blood; Glycoproteins / chemistry; Humans; Hydrophobic and Hydrophilic Interactions; Lectins / blood; Lectins / chemistry; Male; Ovarian Neoplasms / diagnosis; Polysaccharides / blood; Polysaccharides / chemistry; ROC Curve; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Mass measurement accuracy comparisons between a double-focusing magnetic sector and a time-of-flight mass analyzer

RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 22(10), 1563–1566.

By: M. Bereman n, M. Lyndon n, R. Dixon n & D. Muddiman n 

co-author countries: United States of America 🇺🇸
MeSH headings : Equipment Design; Equipment Failure Analysis; Magnetics / instrumentation; Reproducibility of Results; Sensitivity and Specificity; Spectrometry, Mass, Electrospray Ionization / instrumentation; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / instrumentation
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Carbohydrate analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

ANALYTICAL CHEMISTRY, 79(22), 8812–8815.

By: M. Bereman n, T. Williams n  & D. Muddiman n 

co-author countries: United States of America 🇺🇸

Contributors: M. Bereman n, T. Williams n  & D. Muddiman n 

MeSH headings : Carbohydrates / analysis; Cyclotrons; Fourier Analysis; Spectrometry, Mass, Electrospray Ionization / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Detection of attomole amounts of analyte by desorption electrospray ionization mass spectrometry (DESI-MS) determined using fluorescence spectroscopy

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 18(6), 1093–1096.

By: M. Bereman n & D. Muddiman n 

co-author countries: United States of America 🇺🇸
MeSH headings : Microchemistry / methods; Nanotechnology / methods; Rhodamines / chemistry; Spectrometry, Fluorescence / methods; Spectrometry, Mass, Electrospray Ionization / methods; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Remote mass spectrometric sampling of electrospray- and desorption electrospra-generated ions using an air ejector

Journal of the American Society for Mass Spectrometry, 18(10), 1844–1847.

By: R. Dixon, M. Bereman, D. Muddiman  & A. Hawkridge

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2007 journal article

Remote mass spectrometric sampling of electrospray- and desorption electrospray-generated ions using an air ejector

Journal of the American Society for Mass Spectrometry, 18(10), 1844–1847.

By: R. Dixon n, M. Bereman n, D. Muddiman n  & A. Hawkridge  n

co-author countries: United States of America 🇺🇸
MeSH headings : Air; Environmental Monitoring / instrumentation; Equipment Design; Equipment Failure Analysis; Flow Injection Analysis / instrumentation; Flow Injection Analysis / methods; Rheology / instrumentation; Rheology / methods; Robotics / instrumentation; Specimen Handling / instrumentation; Spectrometry, Mass, Electrospray Ionization / instrumentation; Spectrometry, Mass, Electrospray Ionization / methods; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / instrumentation
Sources: Crossref, ORCID
Added: February 24, 2020

2006 journal article

Direct high-resolution peptide and protein analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

Rapid Communications in Mass Spectrometry, 20(22), 3409–3411.

By: M. Bereman n, L. Nyadong*, F. Fernandez * & D. Muddiman n 

co-author countries: United States of America 🇺🇸
MeSH headings : Bradykinin / analysis; Formates / analysis; Glucagon / analysis; Insulin / analysis; Melitten / analysis; Peptides / analysis; Proteins / analysis; Spectrometry, Mass, Electrospray Ionization / methods; Spectroscopy, Fourier Transform Infrared; Vasodilator Agents / analysis
Sources: Crossref, Web Of Science, ORCID
Added: August 6, 2018