Irfan Siddique

Lee, J.-H., Siddique, M. I., Jang, S., Kim, G.-W., Choi, G. J., Kwon, J.-K., & Kang, B.-C. (2024). Identification of QTLs associated with resistance to bacterial wilt in pepper (Capsicum annuum L.) through bi-parental QTL mapping and genome-wide association analysis. Scientia Horticulturae, 329, 112987. https://doi.org/10.1016/j.scienta.2024.112987

Siddique, M. I., Silverman, E., Louws, F., & Panthee, D. R. (2024). Quantitative Trait Loci Mapping for Bacterial Wilt Resistance and Plant Height in Tomatoes. PLANTS-BASEL, 13(6). https://doi.org/10.3390/plants13060876

Siddique, M. I., Younis, A., Gururani, M. A., & Venkatesh, J. (2023). Application of TILLING as a Reverse Genetics Tool to Discover Mutation in Plants Genomes for Crop Improvement. https://doi.org/10.1007/978-981-16-9720-3_9

Lee, Y.-R., Siddique, M. I., Kim, D.-S., Lee, E. S., Han, K., Kim, S.-G., & Lee, H.-E. (2023). CRISPR/Cas9-mediated gene editing to confer turnip mosaic virus (TuMV) resistance in Chinese cabbage (<i>Brassica rapa</i>). Horticulture Research, 10(6). https://doi.org/10.1093/hr/uhad078

Venkatesh, J., Kim, S. J., Siddique, M. I., Kim, J. H., Lee, S. H., & Kang, B. C. (2023). CopE and TLR6 RNAi-mediated tomato resistance to western flower thrips. Journal of Integrative Agriculture, 22(2), 471–480. https://doi.org/10.1016/j.jia.2022.12.009

Patil, A. S., Kim, G. W., Kang, M. Y., Lee, H. Y., Mekonnen, S. A., Siddique, M. I., & Han, K. (2023). Genetic Analyses of Bolting Time in Radish (Raphanus sativus L.). Journal of Horitucultural Science and Technology, 41(1), 215.

Adhikari, P., Siddique, M. I., Louws, F. J., & Panthee, D. R. (2023). Identification of quantitative trait loci associated with bacterial spot race T4 resistance in intra-specific populations of tomato (Solanum lycopersicum L.). PLOS ONE, 18(12), e0295551. https://doi.org/10.1371/journal.pone.0295551

Siddique, M. I., Blume, J., Zhang, J., & Panthee, D. (2023). Mapping QTL for Septoria Leaf Spot Resistance in Tomato. Annual conference of American Society of Horticultural Science. Poster presented at the Annual conference of American Society of Horticultural Science, Orlando, FL.

Adhikari, T. B., Siddique, M. I., Louws, F. J., Sim, S.-C., & Panthee, D. R. (2023). Molecular mapping of quantitative trait loci for resistance to early blight in tomatoes. Frontiers in Plant Science, 14. https://doi.org/10.3389/fpls.2023.1135884

Siddique, M. I., Younis, A., Naing, A. H., & Kim, C. K. (2022). Cisgenic Crops and Disease Resistance. https://doi.org/10.1007/978-3-031-06628-3_8

Ilyas, T., Jin, H., Siddique, M. I., Lee, S. J., Kim, H., & Chua, L. (2022). DIANA: A deep learning-based paprika plant disease and pest phenotyping system with disease severity analysis. Frontiers in Plant Science, 13. https://doi.org/10.3389/fpls.2022.983625

Siddique, M. I., Lee, J.-H., Ahn, J.-H., Kusumawardhani, M. K., Safitri, R., Harpenas, A., … Kang, B.-C. (2022). Genotyping-by-sequencing-based QTL mapping reveals novel loci for Pepper yellow leaf curl virus (PepYLCV) resistance in Capsicum annuum. PLOS ONE, 17(2), e0264026. https://doi.org/10.1371/journal.pone.0264026

Hanif, M., Khan, R., Kiran, J., Ul Haq, I., Ali, S., Niaz, Y., … Siddique, M. I. (2022). Interactive effect of organic and mineral phosphorus on volatile compounds, morphology, and physiology of garlic (Allium sativum L.). JOURNAL OF KING SAUD UNIVERSITY SCIENCE, 34(8). https://doi.org/10.1016/j.jksus.2022.102351

Asekova, S., Oh, E., Kulkarni, K. P., Siddique, M. I., Lee, M. H., Kim, J. I., … Cho, K.-S. (2021). An Integrated Approach of QTL Mapping and Genome-Wide Association Analysis Identifies Candidate Genes for Phytophthora Blight Resistance in Sesame (Sesamum indicum L.). Frontiers in Plant Science, 12. https://doi.org/10.3389/fpls.2021.604709

Lee, J.-H., Siddique, M. I., Kwon, J.-K., & Kang, B.-C. (2021). Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes of Phytophthora capsici. Frontiers in Microbiology, 12. https://doi.org/10.3389/fmicb.2021.694136

Lee, E. S., Kim, D. S., Lee, H. E., Han, K., Siddique, M. I., Back, C. G., … Lee, O. (2021). Evaluation of Gummy Stem Blight Resistance and Selection for Development of Inbred Line in Wild Watermelon (Citrullus spp. Journal of Horticultural Science and Technology, 39(2), 211–212.

Kim, T. G., Solomon, A. M., Han, K., Lee, H. Y., Patil, A., Siddique, M. I., & Ahn, J. (2021). Fine Mapping and Candidate Capup Gene Identification Controlling Fruit Orientation in Pepper (Capsicum spp.). Korean Society of Breeding Studies, 289.

Solomon, A. M., Kim, T.-G., Han, K., Lee, H.-Y., Patil, A., Siddique, M. I., … Kang, B.-C. (2021). Fine Mapping and Candidate Gene Identification for the CapUp Locus Controlling Fruit Orientation in Pepper (Capsicum spp.). Frontiers in Plant Science, 12. https://doi.org/10.3389/fpls.2021.675474

Han, K., Lee, J., Lee, E.-S., Siddique, M. I., Lee, H.-E., Park, H. Y., & Kim, D.-S. (2021). Genetic mapping of a locus for restorer gene of Ogura cytoplasmic male sterility in radish (Raphanus sativus L.). Annual Conference of the Korean Society for Breeding Science. Poster presented at the Annual Conference of the Korean Society for Breeding Science, Jeju, South Korea.

Siddique, M. I., Lee, Y.-R., Lee, H.-E., Lee, E. S., Han, K., & Kim, D.-S. (2021). Genome editing of eIF4E1 in Chinese cabbage confers resistance to turnip mosaic virus. Annual Fall Conference of the Korean Society of the Horticultural Science. Poster presented at the Annual Fall Conference of the Korean Society of the Horticultural Science, Yeosu, South Korea.

Lee, H. E., Siddique, M. I., Lee, Y. R., Lee, E. S., Han, K., & Kim, D. S. (2021). Genome editing of eIF4E1 in Chinese cabbage confers resistance to turnip mosaic virus. Journal of Horticultural Science and Technology, 39(2), 210.

Lee, Y.-R., Kim, C. W., Han, J. W., Choi, H. J., Han, K., Lee, E. S., … Lee, H.-E. (2021). Genotyping-by-Sequencing Derived Genetic Linkage Map and Quantitative Trait Loci for Sugar Content in Onion (Allium cepa L.). Plants, 10(11), 2267. https://doi.org/10.3390/plants10112267

Han, K., Jo, J., Yeum, J. G., Manivannan, A., & Siddique, M. I. (2021). Identification of QTLs controlling fruit firmness of octoploid strawberry (Fragaria× ananassa) by integrating GWAS and QTL analysis [Poster]. Korean Society of Breeding Studies, 2021(1), 100–100.

Siddique, M. I., Han, K., Lee, J., Lee, E. S., Lee, Y.-R., Lee, H.-E., … Kim, D.-S. (2021). QTL Analysis for Chlorophyll Content in Strawberry (Fragaria × ananassa Duch.) Leaves. Agriculture, 11(11), 1163. https://doi.org/10.3390/agriculture11111163

Lee, E. S., Kim, D.-S., Kim, S. G., Huh, Y.-C., Back, C.-G., Lee, Y.-R., … Lee, J. (2021). QTL Mapping for Gummy Stem Blight Resistance in Watermelon (Citrullus spp.). Plants, 10(3), 500. https://doi.org/10.3390/plants10030500

Siddique, M. I., Han, K., Lee, J., Lee, H.-E., Lee, Y.-R., Lee, S. Y., … Kim, D.-S. (2021). QTL mapping for the leaf chlorophyll content in octoploid strawberry (Fragaria x ananassa. Annual Conference of the Korean Society for Breeding Science. Poster presented at the Annual Conference of the Korean Society for Breeding Science, Jeju, South Korea.

Siddique, M. I., Han, K., Lee, J., Lee, H. E., Lee, Y. R., Lee, S. Y., … Kim, D. S. (2021). QTL mapping for the leaf chlorophyll content in strawberry (Fragaria x ananassa). Korean Society of Breeding Studies, 2021(1), 295.

Siddique, M., Din, N., Ahmad, M., Ali, A., Naz, I., Alam, S. S., & Ullah, N. (2020). Bioefficacy of Some Aqueous Phytoextracts Against Clavibacter Michiganensis Subsp. Michiganensis (Smith), the Cause of Bacterial Canker of Tomato. Gesunde Pflanzen, 72(3), 207–217. https://doi.org/10.1007/s10343-020-00503-9

Siddique, M. I., Back, S., Lee, J.-H., Jo, J., Jang, S., Han, K., … Kang, B.-C. (2020). Development and Characterization of an Ethyl Methane Sulfonate (EMS) Induced Mutant Population in <i>Capsicum annuum</i> L. Plants, 9(3), 396. https://doi.org/10.3390/plants9030396

Kim, B.-S., Pa Wai, K. P., Siddique, M. I., Mo, H.-S., Yoo, H. J., Kim, H. S., & Hong, S.-B. (2020). First report of phytophthora leaf blight and vine rot of kudzu (Pueraria lobata) in Korea. Research in Plant Disease, 26(2), 109–115. https://doi.org/10.5423/RPD.2020.26.2.103

Siddique, M. I. (2019). Combined Linkage and Association Mapping Reveals Novel QTLs and Candidate Genes for Phytophthora capsici Root Rot in Capsicum annuum. International Horticulture Conference. Presented at the International Horticulture Conference, Bahauddin Zakariya University, Multan, Pakistan.

Siddique, M. I., Lee, J.-H., & Kang, B.-C. (2019). Comparative genomic analysis of three isolates of Phytophthora capsici. Kim Dae-jung Convention Center. Poster presented at the Kim Dae-jung Convention Center, Gwangju, South Korea.

Siddique, M. I., Lee, H.-Y., Ro, N.-Y., Han, K., Venkatesh, J., Solomon, A. M., … Kang, B.-C. (2019). Identifying candidate genes for Phytophthora capsici resistance in pepper (Capsicum annuum) via genotyping-by-sequencing-based QTL mapping and genome-wide association study. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-46342-1

Patil, A. S., Kang, M. Y., Lee, H. Y., Mekonnen, S. A., Siddique, M. I., & Han, K. (2019). Integrated bi-parental quantitative trait loci mapping and genome-wide association provides novel candidate genes for plant height and habits in pepper (Capsicum annuum) using a superior Dempsey reference genome. Korean Society of Breeding Studies, 2019(1), 230–230. MY Kang, HY Lee, SA Mekonnen, MI: Siddique, K Han. Korean Society of Breeding Studies.

Changkwian, A., Venkatesh, J., Lee, J.-H., Han, J.-W., Kwon, J.-K., Siddique, M. I., … Kang, B.-C. (2019). Physical localization of the root-knot nematode (Meloidogyne incognita) resistance locus Me7 in pepper (Capsicum annuum). Frontiers in Plant Science, 10. https://doi.org/10.3389/fpls.2019.00886

Siddique, M. I. (2019). QTL Mapping and Genome-Wide Association Study for Phytophthora capsici Resistance in Pepper (Capsicum annuum) and Comparative Genomic Analysisof P. capsici Isolates. 11th Plant Genomics and Breeding Workshop. Presented at the 11th Plant Genomics and Breeding Workshop, Anmyeon, South Korea.

Back, S., Jo, J., Siddique, M. I., & Kang, B.-cheorl. (2018). Identification of eIF4E Mutants in EMS-induced Pepper (Capsicum annuum) Populations by TILLING (Targeting Induced Local Lesions IN Genomes). Annual Spring Conference of the Korean Society of the Horticultural Science. Poster presented at the Annual Spring Conference of the Korean Society of the Horticultural Science, South Korea.

Siddique, M. I., Lee, H. Y., Lee, H. Y., Han, K., Venkatesh, J., Kwon, J. K., & Kang, B. C. (2018). QTL and GWAS Analysis of Phytophthora Resistance in Capsicum. Korean Society of Breeding Studies, 2018(1), 13.

Siddique, M. I., Han, K., & Kang, B. C. (2017). Evaluation of phenotypic variants and identification of non-pungent mutants among EMS-treated M2 populations [Poster]. Korean Society of Breeding Studies, 2017(1), 72. Korean Society of Breeding Studies.

Lee, J.-H., An, J.-T., Siddique, M. I., Han, K., Choi, S., Kwon, J.-K., & Kang, B.-C. (2017). Identification and molecular genetic mapping of Chili veinal mottle virus (ChiVMV) resistance genes in pepper (Capsicum annuum). Molecular Breeding, 37(10). https://doi.org/10.1007/s11032-017-0717-6

Siddique, M. I., Wai, K. P. P., Mo, H.-S., Yoo, H.-J., Jang, K.-S., Jeon, S.-G., … Kim, B.-S. (2017). Resistance to Phytophthora capsici, Restorer-offertility
Genotype for Cytoplasmic Male Sterility
and Chemical Quality Components of Breeding
Lines Developed for Improvement of Subicho, a
Land Race of Pepper in Yeongyang. Horticultural Science and Technology, 35(6), 758–768. https://doi.org/10.12972/kjhst.20170080

Kim, B. S., Siddique, M. I., Mo, H., Yoo, H., Wai, K. P. P., Jang, K. S., … Jeon, S. (2016). Breeding a landrace of capsicum pepper in Yeongyang, ‘Subicho’, for resistance to <i>Phytophthora capsici. Acta Horticulturae, 1127(1127), 97–102. https://doi.org/10.17660/ActaHortic.2016.1127.17

Byeon, S., Abebe, A. M., Jegal, Y., Wai, K. P. P., Siddique, M. I., Mo, H.-S., … Kim, B. (2016). Characterization of Sources of Resistance to Bacterial Spot in Capsicum Peppers. Horticultural Science and Technology, 34(5), 779–789. https://doi.org/10.12972/KJHST.20160082

Abebe, A. M., Wai, K. P. P., Siddique, M. I., Mo, H.-S., Yoo, H. J., Jegal, Y., … Kim, B.-S. (2016). Evaluation of Phytophthora root rot- and bacterial wilt-resistant inbred lines and their crosses for use as rootstocks in pepper (Capsicum annuum L.). Horticulture Environment and Biotechnology, 57(6), 598–605. https://doi.org/10.1007/s13580-016-0050-8

Siddique, M. I., Han, K., & Kang, B.-C. (2016). Exploring Resistance against Phytophthora capsici in Pepper. Ramda Plaza Hotel. Poster presented at the Ramda Plaza Hotel, Cheonju, South Korea.

Dong, P., Han, K., Siddique, M. I., Kwon, J.-K., Zhao, M., Wang, F., & Kang, B.-C. (2016). Gene-Based Markers for the <i>Tomato Yellow Leaf Curl Virus. Plant Breeding and Biotechnology, 4(1), 79–86. https://doi.org/10.9787/pbb.2016.4.1.79

Lee, J.-H., An, J.-T., Han, K., Choi, S., Siddique, M. I., & Kang, B.-C. (2016). Genetic mapping of resistance sources against ChiVMV (Chili veinal mottle virus) in hot pepper. Ramda Plaza Hotel. Poster presented at the Ramda Plaza Hotel, Cheonju, South Korea.

Siddique, M. I., Han, K., Hwang, D., Jeong, H.-J., & Kang, B.-C. (2015). Assessment of EMS mutagenic effects in Capsicum annuum population for the identification of non-pungent mutants. Annual Spring Conference of the Korean Society for Horticultural Science. Poster presented at the Annual Spring Conference of the Korean Society for Horticultural Science, Yeosu Expo, South Korea.

Jeong, H. S., Siddique, M. I., An, J. T., Kim, K. T., Choi, G. J., Struss, D., & Kang, B. C. (2015). Characterization and interaction analysis of two QTLs, QTL5-1 and QTL5-2, controlling Phytophthora capsici resistance in Capsicum annuum using near-isogenic lines. Korea Breeding Society Next Generation BG21 Project Group GSP Project Group Joint Symposium, 130–130.

Siddique, M. I., Han, K., Hwang, D., Jeong, H.-J., Rai, A., & Kang, B.- C. (2015). Development of EMS mutant populations in Capsicum annuum and identification of non-pungent mutants. Annual Conference of the Korean Society for Breeding Science. Poster presented at the Annual Conference of the Korean Society for Breeding Science, Bexco, Busan, South Korea.

Younis, A., Riaz, A., Mushtaq, N., Tahir, Z., & Siddique, M. I. (2015). Evaluation of the Suitability of Sewage and Recycled Water for Irrigation of Ornamental Plants. Communications in Soil Science and Plant Analysis, 46(1), 62–79. https://doi.org/10.1080/00103624.2014.956886

Wai, K. P. P., Siddique, M. I., Mo, H.-S., Yoo, H. J., Byeon, S.-E., Jegal, Y., … Kim, B.-S. (2015). Pathotypes of Bacterial Spot Pathogen Infecting Capsicum Peppers in Korea. Plant Pathology Journal, 31(4), 428–432. https://doi.org/10.5423/PPJ.NT.05.2015.0074

Jang, S., Han, K., Jo, Y. D., Jeong, H.-J., Siddique, M. I., & Kang, B.-C. (2015). Substitution of a Dysfunctional pAMT Allele Results in Low-Pungency but High Levels of Capsinoid in <i>Capsicum chinense</i> ‘Habanero.’ Plant Breeding and Biotechnology, 3(2), 119–128. https://doi.org/10.9787/pbb.2015.3.2.119

Younis, A., Riaz, A., Ahmed, I., Siddique, M. I., Tariq, U., Hameed, M., & Nadeem, M. (2014). Anatomical changes induced by NaCl stress in root and stem of Gazania harlequin L. Agricultural Communications, 2, 8–14.

Siddique, M. I. (2014). Breeding Local Cultivars of Capsicum Pepper Resistant to Phytophthora capsici and their Restorer of Fertility Genotype interacting with Cytoplasmic Male Sterility Adapted to Yeongyang. Plant Factory conference. Presented at the Plant Factory conference, Kyoto, Japan.

Kim, B. S., Siddique, M. I., Mo, H., Yoo, H., Wai, K. P. P., Jang, K. S., … Jeon, S. (2014). Breeding a landrace of capsicum pepper in Yeongyang, 'Subicho', for resistance to Phytophthora capsici. XXIX International Horticultural Congress on Horticulture: Sustaining Lives, Livelihoods and Landscapes (IHC2014): International Symposium on Plant Breeding in Horticulture. Poster presented at the XXIX International Horticultural Congress on Horticulture: Sustaining Lives, Livelihoods and Landscapes (IHC2014): International Symposium on Plant Breeding in Horticulture, Brisbane, Australia.

Siddique, M. I. (2014). Evaluation and Characterization of Phytophthora Resistant Breeds of Yeongyang Local Cultivars of Pepper (Capsicum annuum L.) MI Siddique (Ph.D. Thesis). Kyungpook National University.

Siddique, M. I., Mo, H., Wai, K. P. P., & Kim, B. S. (2014). Fertility-restoring Genotype Interacting with Male Sterile Cytoplasm of Youngyang Local Breeds of Pepper Resistant to Phytophthora capsici. Journal of Horticultural Science and Technology, 32(1), 109–109.

Siddique, M. I., Wai, K. P. P., Yoo, H. J., Mo, H. S., & Kim, B.-S. (2014). Fertility–Restoring Genotype interacting with Male Sterile Cytoplasm of Yeongyang Local Breeds of Pepper, Resistant to Phytophthora Capsici. Annual Spring Conference of the Korean Society for Horticultural Science. Poster presented at the Annual Spring Conference of the Korean Society for Horticultural Science, Pyeong Chang Campus, Seoul National University, Pyeong Chang, Korea.

Mo, H., Kim, S., Wai, K. P. P., Siddique, M. I., Yoo, H., & Kim, B.-S. (2014). New sources of resistance to Phytophthora capsici in Capsicum spp. Horticulture Environment and Biotechnology, 55(1), 50–55. https://doi.org/10.1007/s13580-014-0016-7

Kim, B.-S., Wai, K. P. P., Siddique, M. I., & Mo, H. S. (2014). Phytophthora Leaf Blight and Vine Rot of Kudzu (Pueraria thunbergiana). 2014 Conference of The Korean Society of Plant Pathology. Poster presented at the 2014 Conference of The Korean Society of Plant Pathology, Andong National University, Andong, Korea.

Ramzan, F., Younis, A., Riaz, A., Ali, S., Siddique, M. I., & Lim, K.-B. (2014). Pre-planting Exogenous Application of Gibberellic Acid Influences Sprouting, Vegetative Growth, Flowering, and Subsequent Bulb Characteristics of 'Ad-Rem' Tulip. Horticulture, Environment, and Biotechnology, 55(6), 479–488. https://doi.org/10.1007/S13580-014-0113-7

Younis, A., Siddique, M. I., Kim, C.-K., & Lim, K.-B. (2014). RNA Interference (RNAi) Induced Gene Silencing: A Promising Approach of Hi-Tech Plant Breeding. International Journal of Biological Sciences, 10(10), 1150–1158. https://doi.org/10.7150/IJBS.10452

Younis, A., Riaz, A., Siddique, M. I., Lim, K.-B., Hwang, Y.-J., & Khan, M. A. (2013). Anatomical and Morphological Variation in Dracaena reflexa ‘Variegata’ Grown in Different Organic Potting Substrates. Korean Society for Floricultural Science, 21(4), 162–171. https://doi.org/10.11623/frj.2013.21.4.32

Siddique, M. I., Mo, H., & Kim, B.-S. (2012). Testing Resistance in Selected Breeds of Yeongyang Pepper (Capsicum annuum) against Phytophthora capsici. Research day at Kyungpook National University. Poster presented at the Research day at Kyungpook National University, Daegu, Korea.