Spatiotemporal Gene Expression Profiling and Network Inference: A Roadmap for Analysis, Visualization, and Key Gene Identification
Spurney, R., Schwartz, M., Gobble, M., Sozzani, R., & Broeck, L. V. (2021, January 1). Methods in Molecular Biology.
author keywords: Gene regulatory network inference; RNA sequencing; Bioinformatics; Network visualization
MeSH headings : Algorithms; Amino Acid Motifs / genetics; Cluster Analysis; Computational Biology / methods; Gene Expression Profiling / methods; Gene Expression Regulation / genetics; Gene Regulatory Networks / genetics; Multigene Family; RNA-Seq / methods; Software; Spatio-Temporal Analysis; Workflow
topics (OpenAlex): Bioinformatics and Genomic Networks; Gene Regulatory Network Analysis; Gene expression and cancer classification
TL;DR:
This chapter aims to present a workflow feasible and accessible for plant biologists without a bioinformatics or computer science background and chooses TuxNet, a user-friendly graphical user interface that integrates RNA sequencing data analysis with GRN inference, for the purpose of providing a detailed tutorial.
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