Prasad Uday Bandodkar

College of Engineering

Works (4)

Updated: July 5th, 2023 14:53

2020 article

Robustness of the Dorsal morphogen gradient with respect to morphogen dosage

Asafen, H. A., Bandodkar, P. U., Carrell-Noel, S., Schloop, A. E., Friedman, J., & Reeves, G. T. (2020, April 6). PLoS Computational Biology.

By: H. Asafen  n, P. Bandodkar n, S. Carrell-Noel  n, A. Schloop n, J. Friedman n & G. Reeves n

MeSH headings : Animals; Body Patterning / genetics; Cell Nucleus / metabolism; Cytoplasm / metabolism; DNA-Binding Proteins / metabolism; Drosophila / embryology; Drosophila / genetics; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Embryo, Nonmammalian / metabolism; Gene Expression Regulation, Developmental / genetics; Morphogenesis / genetics; NF-kappa B / metabolism; Nuclear Proteins / genetics; Nuclear Proteins / metabolism; Phosphoproteins / genetics; Phosphoproteins / metabolism; Signal Transduction; Transcription Factors / genetics; Transcription Factors / metabolism
topics (OpenAlex): Developmental Biology and Gene Regulation; Cellular Mechanics and Interactions; Biocrusts and Microbial Ecology
TL;DR: The robustness of the Dorsal/NF-κB signaling module with respect to perturbations to the dosage of maternally-expressed dorsal mRNA is investigated and the need for quantitative understanding of biophysical mechanisms of morphogen gradients in order to understand emergent phenotypes, such as robustness is highlighted. (via Semantic Scholar)
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Added: May 26, 2020

2020 article

Spatiotemporal control of gene expression boundaries using a feedforward loop

Bandodkar, P. U., Asafen, H. A., & Reeves, G. T. (2020, January 11). Developmental Dynamics.

By: P. Bandodkar n, H. Asafen  n & G. Reeves n

author keywords: dorsal morphogen; Drosophila embryo; feedforward loop; gene expression model; spatiotemporal dynamics; transcription factor; Twist; Zelda
MeSH headings : Animals; Body Patterning / genetics; Body Patterning / physiology; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster; Embryo, Nonmammalian / metabolism; Gene Expression Regulation, Developmental / genetics; Gene Expression Regulation, Developmental / physiology; NF-kappa B / metabolism; Signal Transduction / genetics; Signal Transduction / physiology
topics (OpenAlex): Gene Regulatory Network Analysis; Cellular Mechanics and Interactions; Plant Molecular Biology Research
TL;DR: This work studied the spatiotemporal behavior of a coherent FFL in two contexts: a generic, oscillating morphogen gradient and the dorsal-ventral patterning of the early Drosophila embryo by a gradient of the NF-κB homolog Dorsal with its early target Twist. (via Semantic Scholar)
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Added: February 3, 2020

2020 article

Spatiotemporal control of gene expression boundaries using a feedforward loop

Reeves, G., Bandodkar, P., & Asafen, H. A. (2020, April 1). The FASEB Journal.

By: G. Reeves n, P. Bandodkar n & H. Asafen  n

topics (OpenAlex): Gene Regulatory Network Analysis; Cellular Mechanics and Interactions
TL;DR: This work studied the spatiotemporal behavior of a coherent FFL in two contexts: a generic, oscillating morphogen gradient and the dorsal‐ventral patterning of the early Drosophila embryo by a gradient of the NF‐κB homolog Dorsal with its early target Twist. (via Semantic Scholar)
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Added: October 12, 2020

2019 article

Formation, interpretation, and regulation of the Drosophila Dorsal/NF-κB gradient

Schloop, A. E., Bandodkar, P. U., & Reeves, G. T. (2019, December 26). Current Topics in Developmental Biology/Current Topics in Developmental Biology.

By: A. Schloop n, P. Bandodkar n & G. Reeves n

MeSH headings : Animals; Body Patterning; Computational Biology / methods; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster / embryology; Drosophila melanogaster / physiology; Embryo, Nonmammalian / cytology; Embryo, Nonmammalian / physiology; Gene Expression Regulation, Developmental; NF-kappa B / genetics; NF-kappa B / metabolism; Nuclear Proteins / genetics; Nuclear Proteins / metabolism; Phosphoproteins / genetics; Phosphoproteins / metabolism; Signal Transduction; Transcription Factors / genetics; Transcription Factors / metabolism
topics (OpenAlex): Developmental Biology and Gene Regulation; RNA Research and Splicing
TL;DR: The mechanisms behind the initiation of the Dorsal gradient and its regulation of target genes are described, and a discussion of quantitative and computational studies ofThe Dl gradient system, including regulation of theDl gradient is discussed. (via Semantic Scholar)
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Added: May 26, 2020

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