Parminder Kaur

Liu, M., Pan, H., Kaur, P., Wang, L. J., Jin, M., Detwiler, A. C., … Riehn, R. (2023). Assembly path dependence of telomeric DNA compaction by TRF1, TIN2, and SA1. BIOPHYSICAL JOURNAL, 122(10), 1822–1832. https://doi.org/10.1016/j.bpj.2023.04.014

Kaur, P., Lu, X., Xu, Q., Irvin, E. M., Pappas, C., Zhang, H., … Wang, H. (2023). High-speed AFM imaging reveals DNA capture and loop extrusion dynamics by cohesin-NIPBL. JOURNAL OF BIOLOGICAL CHEMISTRY, 299(11). https://doi.org/10.1016/j.jbc.2023.105296

Laspata, N., Kaur, P., Mersaoui, S. Y., Muoio, D., Liu, Z. S., Bannister, M. H., … Fouquerel, E. (2023, February 16). PARP1 associates with R-loops to promote their resolution and genome stability. NUCLEIC ACIDS RESEARCH, Vol. 2. https://doi.org/10.1093/nar/gkad066

Wojtaszek, J. L., Hoff, K. E., Longley, M. J., Kaur, P., Andres, S. N., Wang, H., … Copeland, W. C. (2023, August 18). Structure-specific roles for PolG2-DNA complexes in maintenance and replication of mitochondrial DNA. NUCLEIC ACIDS RESEARCH, Vol. 8. https://doi.org/10.1093/nar/gkad679

Leighton, G. O., Irvin, E. M., Kaur, P., Liu, M., You, C., Bhattaram, D., … Williams Jr, D. C. (2022). Densely methylated DNA traps Methyl-CpG-binding domain protein 2 but permits free diffusion by Methyl-CpG-binding domain protein 3. JOURNAL OF BIOLOGICAL CHEMISTRY, 298(10). https://doi.org/10.1016/j.jbc.2022.102428

Li, Z., Kaur, P., Lo, C.-Y., Chopra, N., Smith, J., Wang, H., & Gao, Y. (2022, November 18). Structural and dynamic basis of DNA capture and translocation by mitochondrial Twinkle helicase. NUCLEIC ACIDS RESEARCH, Vol. 11. https://doi.org/10.1093/nar/gkac1089

Pan, H., Kaur, P., Barnes, R., Detwiler, A. C., Sanford, S. L., Liu, M., … Wang, H. (2021). Structure, dynamics, and regulation of TRF1-TIN2-mediated trans- and cis-interactions on telomeric DNA. JOURNAL OF BIOLOGICAL CHEMISTRY, 297(3). https://doi.org/10.1016/j.jbc.2021.101080

Kaur, P., Barnes, R., Pan, H., Detwiler, A. C., Liu, M., Mahn, C., … Wang, H. (2021). TIN2 is an architectural protein that facilitates TRF2-mediated trans- and cis-interactions on telomeric DNA. NUCLEIC ACIDS RESEARCH, 49(22), 13000–13018. https://doi.org/10.1093/nar/gkab1142

Kaur, P., Pan, H., Longley, M. J., Copeland, W. C., & Wang, H. (2021). Using Atomic Force Microscopy to Study the Real Time Dynamics of DNA Unwinding by Mitochondrial Twinkle Helicase. BIO-PROTOCOL, 11(17). https://doi.org/10.21769/BioProtoc.4139

Pan, H., Jin, M., Ghadiyaram, A., Kaur, P., Miller, H. E., Ta, H. M., … Wang, H. (2020). Cohesin SA1 and SA2 are RNA binding proteins that localize to RNA containing regions on DNA. NUCLEIC ACIDS RESEARCH, 48(10), 5639–5655. https://doi.org/10.1093/nar/gkaa284

Liu, M., Movahed, S., Dangi, S., Pan, H., Kaur, P., Bilinovich, S. M., … Riehn, R. (2020). DNA looping by two 5-methylcytosine-binding proteins quantified using nanofluidic devices. EPIGENETICS & CHROMATIN, 13(1). https://doi.org/10.1186/s13072-020-00339-7

Kaur, P., Longley, M. J., Pan, H., Wang, W., Countryman, P., Wang, H., & Copeland, W. C. (2020). Single-molecule level structural dynamics of DNA unwinding by human mitochondrial Twinkle helicase. JOURNAL OF BIOLOGICAL CHEMISTRY, 295(17), 5564–5576. https://doi.org/10.1074/jbc.RA120.012795

Wang, H., Ghadiyaram, A., Pan, H., Fan, Y., Kaur, P., Gorthi, A., … Jane Tao, Y. (2019). Cohesin SA2 and EWSR1 in R-Loop Regulation. Biophysical Journal, 116(3), 505a. https://doi.org/10.1016/J.BPJ.2018.11.2723

Kaur, P., Barnes, R., Pan, H., Opresko, P., Riehn, R., & Wang, H. (2019). Single-Molecule Study of TRF2 Mediated DNA Compaction using Physiologically Relevant Long Telomeric DNA. Biophysical Journal, 116(3), 505a. https://doi.org/10.1016/J.BPJ.2018.11.2725

Pan, H., Dangi, S., Kaur, P., Hao, P., Weninger, K., Riehn, R., … Wang, H. (2019). TIN2 is an Architectural Protein Stabilizing TRF1 at Telomere. Biophysical Journal, 116(3), 211a–212a. https://doi.org/10.1016/J.BPJ.2018.11.1168

Countryman, P., Fan, Y., Gorthi, A., Pan, H., Strickland, J., Kaur, P., … Wang, H. (2018). Cohesin SA2 is a sequence-independent DNA-binding protein that recognizes DNA replication and repair intermediates. JOURNAL OF BIOLOGICAL CHEMISTRY, 293(3), 1054–1069. https://doi.org/10.1074/jbc.m117.806406

Kaur, P., Longley, M. J., Pan, H., Wang, H., & Copeland, W. C. (2018). Single-molecule DREEM imaging reveals DNA wrapping around human mitochondrial single-stranded DNA binding protein. NUCLEIC ACIDS RESEARCH, 46(21), 11287–11302. https://doi.org/10.1093/nar/gky875

Pan, H., Bilinovich, S. M., Kaur, P., Riehn, R., Wang, H., & Williams, D. C., Jr. (2017). CpG and methylation-dependent DNA binding and dynamics of the methylcytosine binding domain 2 protein at the single-molecule level. NUCLEIC ACIDS RESEARCH, 45(15), 9164–9177. https://doi.org/10.1093/nar/gkx548

Adkins, N. L., Swygert, S. G., Kaur, P., Niu, H., Grigoryev, S. A., Sung, P., … Peterson, C. L. (2017). Nucleosome-like, Single-stranded DNA (ssDNA)-Histone Octamer Complexes and the Implication for DNA Double Strand Break Repair. JOURNAL OF BIOLOGICAL CHEMISTRY, 292(13), 5271–5281. https://doi.org/10.1074/jbc.m117.776369

Erie, D., Bradford, K., Wilkins, H., Bower, J., Wang, Z., Gauer, J., … Wang, H. (2017). Single Molecule Fluorescence and Atomic Force Microscopy Studies of DNA Repair. Biophysical Journal, 112(3), 7a. https://doi.org/10.1016/J.BPJ.2016.11.061

LeBlanc, S., Wilkins, H., Li, Z. M., Kaur, P., Wang, H., & Erie, D. A. (2017). Using atomic force microscopy to characterize the conformational properties of proteins and protein-DNA complexes that carry out DNA repair. DNA Repair Enzymes: Structure, Biophysics, and Mechanism, 592, 187–212.

Bilinovich, S. M., Pan, H., Kaur, P., Wang, H., & Williams, D. C., Jr. (2017). Walking the DNA Methylation Tightrope: The Involvement of Intrinsically Disordered Regions of Transcription Factors. Biophysical Journal, 112(3), 207a. https://doi.org/10.1016/J.BPJ.2016.11.1144

Kaur, P., Wu, D., Lin, J., Countryman, P., Bradford, K. C., Erie, D. A., … Wang, H. (2016). Enhanced electrostatic force microscopy reveals higher-order DNA looping mediated by the telomeric protein TRF2. Scientific Reports, 6(1). https://doi.org/10.1038/SREP20513

Lin, J., Countryman, P., Chen, H., Pan, H., Fan, Y., Jiang, Y., … Wang, H. (2016). Functional interplay between SA1 and TRF1 in telomeric DNA binding and DNA-DNA pairing. NUCLEIC ACIDS RESEARCH, 44(13), 6363–6376. https://doi.org/10.1093/nar/gkw518

Benarroch-Popivker, D., Pisano, S., Mendez-Bermudez, A., Lototska, L., Kaur, P., Bauwens, S., … Giraud-Panis, M.-J. (2016). TRF2-Mediated Control of Telomere DNA Topology as a Mechanism for Chromosome-End Protection. Molecular Cell, 61(2), 274–286. https://doi.org/10.1016/J.MOLCEL.2015.12.009

Wu, D., Kaur, P., Li, Z. M., Bradford, K. C., Wang, H., & Erie, D. A. (2016). Visualizing the Path of DNA through Proteins Using DREEM Imaging. MOLECULAR CELL, 61(2), 315–323. https://doi.org/10.1016/j.molcel.2015.12.012

Schneeweis, L. A., Obenauer-Kutner, L., Kaur, P., Yamniuk, A. P., Tamura, J., Jaffe, N., … Bryson, J. (2015). Comparison of Ensemble and Single Molecule Methods for Particle Characterization and Binding Analysis of a PEGylated Single-Domain Antibody. Journal of Pharmaceutical Sciences, 104(12), 4015–4024. https://doi.org/10.1002/JPS.24624

Countryman, P. J., Lin, J., Kaur, P., Brennan, E., Chen, H., You, C., … Wang, H. (2015). Determining the DNA Diffusion Behavior of SA2 on Various DNA Substrates. Biophysical Journal, 108(2), 397a. https://doi.org/10.1016/J.BPJ.2014.11.2177

Kaur, P. (2015). Enhanced Electrostatic Force Microscopy Imaging Reveals Mechanism of TRF2 Mediated DNA Compaction. Biophysical Journal, 108(2), 166a. https://doi.org/10.1016/J.BPJ.2014.11.914

Wang, H., Lin, J., Kaur, P., Countryman, P., Opresko, P., Smith, S., & Tao, J. (2015). Revealing Structure and Dynamics of Telomere Maintenance Proteins on DNA: One Molecule at a Time. Biophysical Journal, 108(2), 7a. https://doi.org/10.1016/J.BPJ.2014.11.059

Lin, J., Chen, H., Kaur, P., Miao, W., Countryman, P., You, C., … Wang, H. (2015). Single-Molecule Imaging Reveals Dynamics of SA1-TRF1 Interactions on Telomeric DNA. Biophysical Journal, 108(2), 206a. https://doi.org/10.1016/J.BPJ.2014.11.1138

Roushan, M., Kaur, P., Karpusenko, A., Countryman, P. J., Ortiz, C. P., Fang Lim, S., … Riehn, R. (2014). Probing transient protein-mediated DNA linkages using nanoconfinement. Biomicrofluidics, 8(3), 034113. https://doi.org/10.1063/1.4882775

Lin, J., Kaur, P., Chen, H., Countryman, P., Roushan, M., Flaherty, D., … Wang, H. (2014). Single-molecule imaging reveals DNA-binding properties of cohesin proteins SA1 and SA2. Environmental and Molecular Mutagenesis, 55, S29–29.

Swygert, S. G., Manning, B. J., Senapati, S., Kaur, P., Lindsay, S., Demeler, B., & Peterson, C. L. (2014). Solution-state conformation and stoichiometry of yeast Sir3 heterochromatin fibres. Nature Communications, 5(1). https://doi.org/10.1038/NCOMMS5751

Lin, J., Countryman, P., Buncher, N., Kaur, P., Longjiang, E., Zhang, Y., … Wang, H. (2014). TRF1 and TRF2 use different mechanisms to find telomeric DNA but share a novel mechanism to search for protein partners at telomeres. NUCLEIC ACIDS RESEARCH, 42(4), 2493–2504. https://doi.org/10.1093/nar/gkt1132

Lin, J., Kaur, P., Countryman, P., Opresko, P. L., & Wang, H. (2014). Unraveling secrets of telomeres: One molecule at a time. DNA REPAIR, 20, 142–153. https://doi.org/10.1016/j.dnarep.2014.01.012

Lormand, J. D., Buncher, N., Murphy, C. T., Kaur, P., Lee, M. Y., Burgers, P., … Opresko, P. L. (2013). DNA polymerase delta stalls on telomeric lagging strand templates independently from G-quadruplex formation. NUCLEIC ACIDS RESEARCH, 41(22), 10323–10333. https://doi.org/10.1093/nar/gkt813

Tessmer, I., Kaur, P., Lin, J. G., & Wang, H. (2013). [Review of Investigating bioconjugation by atomic force microscopy]. Journal of Anobiotechnology, 11.

Kaur, P., Qiang-Fu, Fuhrmann, A., Ros, R., Kutner, L. O., Schneeweis, L. A., … Lindsay, S. (2011). Antibody-Unfolding and Metastable-State Binding in Force Spectroscopy and Recognition Imaging. Biophysical Journal, 100(1), 243–250. https://doi.org/10.1016/j.bpj.2010.11.050