Works (108)

Updated: February 15th, 2024 05:03

2023 journal article

Distinct dynamics of the nucleolus in response to nutrient availability and during development in the rice blast fungus

MBIO, 9.

By: E. Cho*, S. Leeโ€‰*, R. Dean nโ€‰ & J. Jeonโ€‰*

co-author countries: Korea (Republic of) ๐Ÿ‡ฐ๐Ÿ‡ท United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: nucleolus; filamentous fungi; nutrient availability; fungal development; rice blast
Sources: Web Of Science, ORCID
Added: October 10, 2023

2023 journal article

Issue Information

MOLECULAR PLANT PATHOLOGY, 24(9), 1015โ€“1016.

By: R. Deanโ€‰

Sources: Web Of Science, ORCID
Added: January 29, 2024

2023 article

Plant Disease Detection Using an Electronic Nose

2023 IEEE SENSORS.

By: E. Sennik n, S. Kinoshita-Millard, Y. Oh n, C. Kafer, R. Dean nโ€‰ & O. Oralkan nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: VOCs; plants; infection; disease; e-nose; machine learning
Sources: Web Of Science, ORCID
Added: February 12, 2024

2023 article

Tissues and mechanisms associated with Verticillium wilt resistance in tomato using bi-grafted near-isogenic lines

Oh, Y., Ingram, T., Shekasteband, R., Adhikari, T., Louws, F. J., & Dean, R. A. (2023, May 15). (M. Hรถfte, Ed.). JOURNAL OF EXPERIMENTAL BOTANY, Vol. 5.

By: Y. Oh n, T. Ingram n, R. Shekasteband nโ€‰, T. Adhikari n, F. Louws nโ€‰ & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Ed(s): M. Hรถfte

author keywords: Defense response; gene expression; grafting; secreted proteins; tomato; Verticillium dahliae
Sources: Web Of Science, ORCID
Added: May 16, 2023

2022 journal article

Host induced gene silencing of Magnaporthe oryzae by targeting pathogenicity and development genes to control rice blast disease

FRONTIERS IN PLANT SCIENCE, 13.

By: M. Wang n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: rice blast; host-induced gene silencing; transgenic plant; RNA silencing; cross-kingdom communication
Sources: Web Of Science, ORCID
Added: September 6, 2022

2021 journal article

Electronic nose system based on a functionalized capacitive micromachined ultrasonic transducer (CMUT) array for selective detection of plant volatiles

SENSORS AND ACTUATORS B-CHEMICAL, 341.

By: E. Sennik n, F. Erden nโ€‰, N. Constantino n, Y. Oh n, R. Dean nโ€‰ & O. Oralkan nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: CMUT; Electronic nose; Gas sensor; k-NN; Machine learning; Plant disease
Sources: Web Of Science, ORCID
Added: April 20, 2021

2021 journal article

Soybean Cyst Nematodes Influence Aboveground Plant Volatile Signals Prior to Symptom Development

FRONTIERS IN PLANT SCIENCE, 12.

By: N. Constantino n, Y. Oh n, E. Sennik n, B. Andersenโ€‰ n, M. Warden*, O. Oralkan nโ€‰, R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: soybean cyst nematode; VOCs; early disease detection; GC-MS; soybean
Sources: Web Of Science, ORCID
Added: October 26, 2021

2020 journal article

Comparative Genome Analyses of 18 Verticillium dahliae Tomato Isolates Reveals Phylogenetic and Race Specific Signatures

FRONTIERS IN MICROBIOLOGY, 11.

By: T. Ingram n, Y. Oh n, T. Adhikari n, F. Louws nโ€‰ & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Solanum lycopersicum; secreted effectors; whole genome resequencing; soilborne fungus; Verticillium dahliae race 2
Sources: Web Of Science, ORCID
Added: January 4, 2021

2020 journal article

Comparative Proteomic Analysis of Wild Type and Mutant Lacking an SCF E3 Ligase F-Box Protein in Magnaporthe oryzae

JOURNAL OF PROTEOME RESEARCH, 19(9), 3761โ€“3768.

By: J. Kalmar n, Y. Oh n, R. Dean nโ€‰ & D. Muddiman nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Ascomycota; F-Box Proteins / genetics; Fungal Proteins / genetics; Magnaporthe / metabolism; Proteomics; Ubiquitin-Protein Ligases / genetics
Sources: Web Of Science, ORCID
Added: October 5, 2020

2020 journal article

Dynamic Changes in the Microbiome of Rice During Shoot and Root Growth Derived From Seeds

FRONTIERS IN MICROBIOLOGY, 11.

By: M. Wang n, A. Eyre n, M. Thonโ€‰*, Y. Oh n & R. Dean nโ€‰

co-author countries: Spain ๐Ÿ‡ช๐Ÿ‡ธ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: rice; seed and seedling; microbiome; diversity; driving factors
Sources: Web Of Science, ORCID
Added: October 19, 2020

2020 journal article

Investigating host-pathogen meta-metabolic interactions of Magnaporthe oryzae infected barley using infrared matrix-assisted laser desorption electrospray ionization mass spectrometry

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 412(1), 139โ€“147.

By: J. Kalmar n, Y. Oh n, R. Dean nโ€‰ & D. Muddiman nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: IR-MALDESI; Mass spectrometry imaging; Orbitrap; Magnaporthe oryzae; Image recognition; Polarity switching
MeSH headings : Hordeum / metabolism; Hordeum / microbiology; Host-Pathogen Interactions; Infrared Rays; Magnaporthe / metabolism; Magnaporthe / physiology; Metabolomics; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / methods
Sources: Web Of Science, ORCID
Added: December 9, 2019

2020 review

Movement of small RNAs in and between plants and fungi

[Review of ]. MOLECULAR PLANT PATHOLOGY, 21(4), 589โ€“601.

By: M. Wang n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: cross kingdom; extracellular vesicles; small RNAs; transportation
MeSH headings : Extracellular Vesicles / metabolism; Fungi / metabolism; Phloem / metabolism; Plasmodesmata / metabolism; RNA Interference; RNA, Plant / metabolism
Sources: Web Of Science, ORCID
Added: February 17, 2020

2019 journal article

Identification and Characterization of the Core Rice Seed Microbiome

PHYTOBIOMES JOURNAL, 3(2), 148โ€“157.

By: A. Eyre n, M. Wang n, Y. Oh n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: endophytes; metagenomics; microbiome; microorganism
Sources: Web Of Science, ORCID
Added: May 26, 2020

2018 article

Characterizing Small RNAs in Filamentous Fungi Using the Rice Blast Fungus, Magnaporthe oryzae, as an Example

PLANT PATHOGENIC FUNGI AND OOMYCETES: METHODS AND PROTOCOLS, Vol. 1848, pp. 53โ€“66.

By: V. Ramanโ€‰*, B. Meyers*, R. Dean nโ€‰ & N. Donofrio*

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: sRNAs; Small interfering RNAs; CPA-sRNAs; RNAseq; Fungus
MeSH headings : Computational Biology / methods; Gene Library; Magnaporthe / genetics; Oryza / microbiology; Plant Diseases / microbiology; RNA, Fungal; RNA, Small Untranslated; Software; User-Computer Interface
Sources: Web Of Science, ORCID
Added: May 13, 2019

2018 article

Host-Microbe Interactions: Fungi Vol 46

Dean, R. A., & Rouxel, T. (2018, December). CURRENT OPINION IN MICROBIOLOGY, Vol. 46, pp. III-V.

By: R. Dean nโ€‰ & T. Rouxelโ€‰*

co-author countries: France ๐Ÿ‡ซ๐Ÿ‡ท United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Apicomplexa / genetics; Apicomplexa / physiology; Fungi / genetics; Fungi / physiology; Host-Pathogen Interactions; Plant Diseases / genetics; Plant Diseases / immunology; Plant Diseases / microbiology; Protozoan Infections / parasitology; Protozoan Infections / physiopathology; Protozoan Proteins / genetics; Protozoan Proteins / metabolism
Sources: Web Of Science, ORCID
Added: January 21, 2019

2018 article

Sequential Phosphopeptide Enrichment for Phosphoproteome Analysis of Filamentous Fungi: A Test Case Using Magnaporthe oryzae

PLANT PATHOGENIC FUNGI AND OOMYCETES: METHODS AND PROTOCOLS, Vol. 1848, pp. 81โ€“91.

By: Y. Oh n, W. Franck n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Mass spectrometry; Phosphopeptide enrichment; Magnaporthe oryzae; Iron-IMAC; TiO2; Fungus
MeSH headings : Chromatography, Affinity; Chromatography, Liquid; Computational Biology / methods; Data Analysis; Fungal Proteins; Humans; Magnaporthe / metabolism; Phosphopeptides / chemistry; Phosphopeptides / isolation & purification; Phosphopeptides / metabolism; Phosphoproteins / chemistry; Phosphoproteins / isolation & purification; Phosphoproteins / metabolism; Proteome; Proteomics / methods; Tandem Mass Spectrometry; Titanium / chemistry
Sources: Web Of Science, ORCID
Added: May 13, 2019

2018 review

To B or not to B: a tale of unorthodox chromosomes

[Review of ]. CURRENT OPINION IN MICROBIOLOGY, 46, 50โ€“57.

co-author countries: France ๐Ÿ‡ซ๐Ÿ‡ท United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Chromosomes, Fungal / genetics; Fungal Proteins / genetics; Fungal Proteins / metabolism; Fungi / genetics; Fungi / metabolism; Fungi / pathogenicity; Virulence
Sources: Web Of Science, ORCID
Added: January 21, 2019

2017 journal article

Comparative proteomic analysis between nitrogen supplemented and starved conditions in Magnaporthe oryzae

Proteome Science, 15.

By: Y. Oh, S. Robertson, J. Parker, D. Muddimanโ€‰ & R. Deanโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Identification and characterization of suppressors of plant cell death (SPD) effectors from Magnaporthe oryzae

MOLECULAR PLANT PATHOLOGY, 18(6), 850โ€“863.

By: W. Sharpee n, Y. Oh n, M. Yi*, W. Franck n, A. Eyre n, L. Okagaki n, B. Valentโ€‰*, R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: effector; rice blast; suppressor
MeSH headings : Fungal Proteins / genetics; Fungal Proteins / metabolism; Host-Pathogen Interactions; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Plant Diseases / genetics; Plant Diseases / microbiology; Plant Leaves / metabolism; Plant Leaves / microbiology; Tobacco / metabolism; Tobacco / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi

BMC GENOMICS, 17.

By: L. Okagaki n, J. Sailsbery n, A. Eyre n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Magnaporthaceae; Magnaporthe; Gaeumannomyces; Two-speed genome; Zig zag model; Comparative genomics; CAzymes; Transcription factors; Diversifying selection; Purifying selection
MeSH headings : Ascomycota / classification; Ascomycota / genetics; Biological Evolution; Comparative Genomic Hybridization; Fungal Proteins / genetics; Genome, Fungal; Magnaporthe / genetics; Multigene Family; Phylogeny; Proteome; Species Specificity; Transcription Factors / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Examining ubiquitinated peptide enrichment efficiency through an epitope labeled protein

ANALYTICAL BIOCHEMISTRY, 512, 114โ€“119.

By: J. Parkerโ€‰ n, Y. Oh n, Y. Moazami n, J. Pierce nโ€‰, P. Loziuk n, R. Dean nโ€‰, D. Muddiman nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Ubiquitination; Gly-Gly enrichment; Enrichment efficiency
MeSH headings : Antibodies, Monoclonal, Murine-Derived / chemistry; Epitopes / chemistry; Muramidase / chemistry; Ubiquitinated Proteins / chemistry; Ubiquitination
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 review

Form and function of fungal and oomycete effectors

[Review of ]. FUNGAL BIOLOGY REVIEWS, 30(2), 62โ€“73.

By: W. Sharpee n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Effector; Effectoromics; MAMP-Triggered immunity (MTI); Reactive oxygen species (ROS); Systemic acquired resistance (SAR)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 article

The influence of funding sources on the scientific method

Okagaki, L. H., & Dean, R. A. (2016, June). MOLECULAR PLANT PATHOLOGY, Vol. 17, pp. 651โ€“653.

By: L. Okagaki n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Evolution, Molecular; Financial Management; Genome, Plant / genetics; Models, Theoretical; Research / economics; Science / education; Science / standards
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Genome sequences of three phytopathogenic species of the Magnaporthaceae family of fungi

G3-Genes Genomes Genetics, 5(12), 2539โ€“2545.

By: L. Okagaki, C. Nunes, J. Sailsbery, B. Clay, D. Brown, T. John, Y. Oh, N. Young ...

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

Genome-wide profiling of DNA methylation provides insights into epigenetic regulation of fungal development in a plant pathogenic fungus, Magnaporthe oryzae

SCIENTIFIC REPORTS, 5.

By: J. Jeonโ€‰*, J. Choiโ€‰*, G. Leeโ€‰*, S. Park*, A. Huh*, R. Dean nโ€‰, Y. Lee*

co-author countries: Korea (Republic of) ๐Ÿ‡ฐ๐Ÿ‡ท United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Animals; DNA (Cytosine-5-)-Methyltransferases / classification; DNA (Cytosine-5-)-Methyltransferases / genetics; DNA (Cytosine-5-)-Methyltransferases / metabolism; DNA Methylation; DNA Transposable Elements / genetics; Epigenesis, Genetic; Fungal Proteins / classification; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Genome, Fungal; Humans; Magnaporthe / genetics; Phylogeny; Plants / microbiology; Reproduction, Asexual; Sequence Analysis, RNA; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Phosphoproteome Analysis Links Protein Phosphorylation to Cellular Remodeling and Metabolic Adaptation during Magnaporthe oryzae Appressorium Development

Journal of Proteome Research, 14(6), 2408โ€“2424.

By: W. Franck n, E. Gokce n, S. Randall n, Y. Oh n, A. Eyre n, D. Muddiman nโ€‰, R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Magnaporthe oryzae; quantitative phosphoproteomics; appressorium formation; network analysis; transcription factors
MeSH headings : Adaptation, Physiological; Basic Helix-Loop-Helix Transcription Factors / metabolism; Chromatography, Liquid; Fungal Proteins / metabolism; Magnaporthe / metabolism; Magnaporthe / physiology; Oryza / microbiology; Phosphoproteins / metabolism; Phosphorylation; Proteomics; Signal Transduction; Tandem Mass Spectrometry
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2014 journal article

Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3

FEMS MICROBIOLOGY LETTERS, 352(2), 165โ€“173.

By: L. Losada*, S. Pakalaโ€‰*, N. Fedorova*, V. Joardar*, S. Shabalinaโ€‰*, J. Hostetler*, S. Pakala*, N. Zafar* ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Basidiomycota; homing endonucleases; repetitive elements
MeSH headings : DNA, Fungal / chemistry; DNA, Fungal / genetics; DNA, Mitochondrial / chemistry; DNA, Mitochondrial / genetics; Evolution, Molecular; Gene Expression Profiling; Genome, Mitochondrial / genetics; Interspersed Repetitive Sequences; Molecular Sequence Data; Rhizoctonia / genetics; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Experimental Evolution Reveals Genome-Wide Spectrum and Dynamics of Mutations in the Rice Blast Fungus, Magnaporthe oryzae

PLOS ONE, 8(5).

By: J. Jeonโ€‰ n, J. Choiโ€‰*, G. Leeโ€‰*, R. Dean nโ€‰ & Y. Lee*

co-author countries: Korea (Republic of) ๐Ÿ‡ฐ๐Ÿ‡ท United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Biological Evolution; Chromosomes, Fungal; Genome, Fungal; Magnaporthe / genetics; Magnaporthe / pathogenicity; Mutation; Oryza / microbiology; Phenotype; Spores, Fungal; Virulence / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Temporal Analysis of theMagnaporthe OryzaeProteome During Conidial Germination and Cyclic AMP (cAMP)-mediated Appressorium Formation

Molecular & Cellular Proteomics, 12(8), 2249โ€“2265.

By: W. Franck n, E. Gokce n, Y. Oh n, D. Muddiman nโ€‰ & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Cyclic AMP / metabolism; Fungal Proteins / metabolism; Magnaporthe / growth & development; Magnaporthe / metabolism; Mitochondrial Proteins / metabolism; Peptide Hydrolases / metabolism; Proteome; Spores, Fungal / growth & development; Spores, Fungal / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 journal article

Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae

PLOS GENETICS, 8(8).

co-author countries: Canada ๐Ÿ‡จ๐Ÿ‡ฆ China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : DNA Transposable Elements; Fungal Proteins; Gene Duplication; Genome, Fungal; Magnaporthe / classification; Magnaporthe / genetics; Magnaporthe / isolation & purification; Magnaporthe / pathogenicity; Molecular Sequence Data; Multigene Family; Oryza / microbiology; Plant Diseases / microbiology; Repetitive Sequences, Nucleic Acid; Sequence Analysis, DNA; Virulence
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 review

Host-induced gene silencing: a tool for understanding fungal host interaction and for developing novel disease control strategies

[Review of ]. MOLECULAR PLANT PATHOLOGY, 13(5), 519โ€“529.

By: C. Nunes n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Fungi / genetics; Gene Silencing / physiology; Host-Pathogen Interactions; Plant Diseases / microbiology; Plants / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

In-Depth Analysis of the Magnaporthe oryzae Conidial Proteome

JOURNAL OF PROTEOME RESEARCH, 11(12), 5827โ€“5835.

By: E. Gokce n, W. Franck n, Y. Oh n, R. Dean nโ€‰ & D. Muddiman nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: proteomics; mass spectrometry; Magnaporthe oryzae; FASP; statistical tests; differential protein expression
MeSH headings : Cell Nucleus / chemistry; Chemical Fractionation / methods; Chromatography, Liquid / methods; Cytoplasm / chemistry; Fungal Proteins / analysis; Fungal Proteins / chemistry; Magnaporthe / chemistry; Mass Spectrometry / methods; Nanotechnology; Nuclear Proteins / analysis; Nuclear Proteins / chemistry; Peptides / analysis; Peptides / chemistry; Proteome / analysis; Proteome / chemistry; Reproducibility of Results; Sensitivity and Specificity; Spores, Fungal / chemistry; Time Factors
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Phylogenetic Analysis and Classification of the Fungal bHLH Domain

MOLECULAR BIOLOGY AND EVOLUTION, 29(5), 1301โ€“1318.

By: J. Sailsbery n, W. Atchley n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: bHLH; fungal; phylogeny; discriminant; analysis
MeSH headings : Amino Acid Sequence; Ascomycota / genetics; Basidiomycota / genetics; Decision Trees; Discriminant Analysis; Fungal Proteins / chemistry; Fungal Proteins / classification; Fungal Proteins / genetics; Genome, Fungal; Helix-Loop-Helix Motifs / genetics; Models, Biological; Molecular Sequence Annotation; Molecular Sequence Data; Phylogeny; Sensitivity and Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Polyubiquitin Is Required for Growth, Development and Pathogenicity in the Rice Blast Fungus Magnaporthe oryzae

PLoS ONE, 7(8), e42868.

By: Y. Oh n, W. Franck n, S. Hanโ€‰*, A. Shows n, E. Gokce n, D. Muddiman nโ€‰, R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Ed(s): K. Nielsen

MeSH headings : Boronic Acids / pharmacology; Bortezomib; Cluster Analysis; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Gene Expression Regulation, Fungal; Germination / genetics; Magnaporthe / genetics; Magnaporthe / growth & development; Magnaporthe / pathogenicity; Mutation; Nitrogen / metabolism; Oryza / microbiology; Plant Diseases / microbiology; Polyubiquitin / genetics; Polyubiquitin / metabolism; Proteasome Inhibitors / pharmacology; Proteolysis / drug effects; Proteomics; Pyrazines / pharmacology; Ubiquitination
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 review

The Top 10 fungal pathogens in molecular plant pathology

[Review of ]. MOLECULAR PLANT PATHOLOGY, 13(4), 414โ€“430.

By: R. Dean nโ€‰, J. Van Kanโ€‰*, Z. Pretoriusโ€‰*, K. Hammond-Kosackโ€‰*, A. Di Pietroโ€‰*, P. Spanuโ€‰*, J. Ruddโ€‰*, M. Dickman* ...

co-author countries: Australia ๐Ÿ‡ฆ๐Ÿ‡บ Germany ๐Ÿ‡ฉ๐Ÿ‡ช Spain ๐Ÿ‡ช๐Ÿ‡ธ United Kingdom of Great Britain and Northern Ireland ๐Ÿ‡ฌ๐Ÿ‡ง Netherlands ๐Ÿ‡ณ๐Ÿ‡ฑ United States of America ๐Ÿ‡บ๐Ÿ‡ธ South Africa ๐Ÿ‡ฟ๐Ÿ‡ฆ
MeSH headings : Fungi / physiology; Fungi / ultrastructure; Plant Pathology; Plants / genetics; Plants / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Characterization and application of small RNAs and RNA silencing mechanisms in fungi

Fungal Biology Reviews, 25(4), 172โ€“180.

By: C. Nunes n, J. Sailsbery n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Sources: Crossref, ORCID
Added: August 28, 2020

2011 journal article

Comparison of stable-isotope labeling with amino acids in cell culture and spectral counting for relative quantification of protein expression

RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 25(17), 2524โ€“2532.

By: T. Collier n, S. Randall n, P. Sarkar n, B. Rao n, R. Dean nโ€‰ & D. Muddiman nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Amino Acid Sequence; Amino Acids / chemistry; Amino Acids / metabolism; Animals; Cell Differentiation; Cell Line; Ectoderm; Embryonic Stem Cells / cytology; Embryonic Stem Cells / metabolism; Humans; Isotope Labeling / methods; Mass Spectrometry; Mice; Molecular Sequence Data; Peptide Fragments; Peptide Mapping; Proteins / analysis; Proteins / chemistry; Proteins / metabolism; Proteomics / methods; Sensitivity and Specificity; Tandem Mass Spectrometry; Time Factors
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

BMC Genomics, 12.

By: C. Nunes n, M. Gowdaโ€‰ n, J. Sailsbery n, M. Xue n, F. Chenโ€‰*, D. Brown n, Y. Oh n, T. Mitchell*, R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Base Sequence; DNA, Intergenic / genetics; Gene Expression Profiling; Hyphae / genetics; Magnaporthe / genetics; Magnaporthe / physiology; Molecular Sequence Data; Plants / microbiology; RNA, Fungal / genetics; RNA, Small Untranslated / genetics; RNA, Transfer / genetics; Repetitive Sequences, Nucleic Acid / genetics; Sequence Analysis, RNA
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2011 journal article

Evaluation of Normalization Methods on GeLC-MS/MS Label-Free Spectral Counting Data to Correct for Variation during Proteomic Workflows

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 22(12), 2199โ€“2208.

By: E. Gokce n, C. Shuford n, W. Franck n, R. Dean nโ€‰ & D. Muddiman nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Label-free; Proteomics; Mass spectrometry; Total spectral count normalization; Normalized spectral abundance factor; Quantification; Spectral counting; Significance test; Fold-change; GeLC-MS/MS; nanoLC-MS; Orbitrap XL
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Improving Proteome Coverage on a LTQ-Orbitrap Using Design of Experiments

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 22(4), 773โ€“783.

By: G. Andrews n, R. Dean nโ€‰, A. Hawkridge n & D. Muddiman nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: LTQ-Orbitrap XL MS/MS instrument parameters; Design of experiments; Fractional-factorial design; Saccharomyces cerevisiae; Proteomics
MeSH headings : Peptide Fragments; Peptide Mapping; Proteome / chemistry; Proteomics / methods; Research Design; Saccharomyces cerevisiae Proteins / chemistry; Tandem Mass Spectrometry / methods; Temperature
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC-MS

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 879(9-10), 610โ€“614.

By: E. Gokce n, G. Andrews n, R. Dean nโ€‰ & D. Muddiman nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: RP HPLC; Fractionation methods; Proteomics; Mass spectrometry
MeSH headings : Chromatography, High Pressure Liquid / methods; Chromatography, Reverse-Phase / methods; Mass Spectrometry / methods; Nanotechnology; Peptide Fragments / analysis; Peptide Fragments / metabolism; Proteome / analysis; Proteome / metabolism; Proteomics / methods; Saccharomyces cerevisiae Proteins / analysis; Saccharomyces cerevisiae Proteins / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

MoSfl1 Is Important for Virulence and Heat Tolerance in Magnaporthe oryzae

PLOS ONE, 6(5).

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Adaptation, Physiological; Genes, Fungal; Hot Temperature; Magnaporthe / genetics; Magnaporthe / pathogenicity; Magnaporthe / physiology; Virulence
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Transcriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses

BMC GENOMICS, 12.

By: S. Mathioniโ€‰*, A. Belo*, C. Rizzoโ€‰*, R. Dean nโ€‰ & N. Donofrio*

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Fungal Proteins / genetics; Gene Expression Profiling; Gene Expression Regulation, Fungal / genetics; Gene Expression Regulation, Fungal / physiology; Magnaporthe / genetics; Magnaporthe / growth & development; Magnaporthe / pathogenicity; Oryza / microbiology; Oxidative Stress / physiology; Reverse Transcriptase Polymerase Chain Reaction; Temperature
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Combining ChIP-chip and Expression Profiling to Model the MoCRZ1 Mediated Circuit for Ca2+/Calcineurin Signaling in the Rice Blast Fungus

PLOS PATHOGENS, 6(5).

By: S. Kim, J. Huโ€‰*, Y. Oh n, J. Parkโ€‰*, J. Choiโ€‰*, Y. Lee*, R. Dean nโ€‰, T. Mitchell*

co-author countries: Korea (Republic of) ๐Ÿ‡ฐ๐Ÿ‡ท United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Calcineurin / metabolism; Calcium / metabolism; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Genome, Fungal; Green Fluorescent Proteins / genetics; Magnaporthe / genetics; Oligonucleotide Array Sequence Analysis; Oryza / microbiology; Plant Diseases / microbiology; Signal Transduction / physiology; Transcription Factors / genetics; Transcription Factors / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Direct Comparison of Stable Isotope Labeling by Amino Acids in Cell Culture and Spectral Counting for Quantitative Proteomics

ANALYTICAL CHEMISTRY, 82(20), 8696โ€“8702.

By: T. Collier n, P. Sarkarโ€‰ n, W. Franck n, B. Rao n, R. Dean nโ€‰ & D. Muddiman nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Amino Acids / analysis; Animals; Cell Line; Humans; Isotope Labeling / methods; Mice; Proteomics / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 review

Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology

[Review of ]. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 74(4), 479โ€“503.

By: T. Torto-Alalibo*, C. Collmer*, M. Gwinn-Giglio*, M. Lindeberg*, S. Meng n, M. Chibucosโ€‰*, T. Tseng*, J. Lomaxโ€‰* ...

co-author countries: United Kingdom of Great Britain and Northern Ireland ๐Ÿ‡ฌ๐Ÿ‡ง United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: T. Torto-Alalibo*, C. Collmer*, M. Gwinn-Giglio*, M. Lindeberg*, S. Meng n, M. Chibucosโ€‰*, T. Tseng*, J. Lomaxโ€‰* ...

MeSH headings : Animals; Bacteria / genetics; Bacteria / metabolism; Bacterial Physiological Phenomena; Cell Adhesion; Computational Biology / methods; Fungi / genetics; Fungi / metabolism; Fungi / physiology; Host-Pathogen Interactions / genetics; Host-Pathogen Interactions / immunology; Plants / immunology; Plants / microbiology; Protein Transport; Symbiosis / genetics; Symbiosis / immunology; Virulence Factors
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 review

Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms

[Review of ]. BMC MICROBIOLOGY, 9.

By: S. Meng n, T. Torto-Alalibo*, M. Chibucosโ€‰*, B. Tyler* & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Fungi / pathogenicity; Host-Pathogen Interactions; Oomycetes / pathogenicity; Plant Diseases / microbiology; Plants / microbiology; Signal Transduction; Spores / pathogenicity; Terminology as Topic; Vocabulary, Controlled
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 review

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae

[Review of ]. BMC MICROBIOLOGY, 9.

By: S. Meng n, D. Brown n, D. Ebboleโ€‰*, T. Torto-Alalibo*, Y. Oh n, J. Deng n, T. Mitchell n, R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Computational Biology; Databases, Protein; Fungal Proteins / genetics; Genome, Fungal; Magnaporthe / genetics; Oryza / microbiology; Sequence Alignment; Sequence Analysis, Protein; Terminology as Topic; Vocabulary, Controlled
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 review

Infection strategies of filamentous microbes described with the Gene Ontology

[Review of ]. TRENDS IN MICROBIOLOGY, 17(7), 320โ€“327.

By: T. Torto-Alalibo*, S. Meng n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Actinomycetales / genetics; Computational Biology / methods; Fungi / genetics; Oomycetes / genetics; Virulence Factors / genetics; Virulence Factors / metabolism; Vocabulary, Controlled
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens

BMC GENOMICS, 9.

By: A. Powell*, G. Conant*โ€‰, D. Brown n, I. Carbone nโ€‰ & R. Dean nโ€‰

co-author countries: Ireland ๐Ÿ‡ฎ๐Ÿ‡ช United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: A. Powell*, G. Conant*โ€‰, D. Brown n, I. Carbone nโ€‰ & R. Dean nโ€‰

MeSH headings : Computational Biology; Evolution, Molecular; Fungi / genetics; Fungi / pathogenicity; Gene Duplication; Genomics; Multigene Family / genetics; Sequence Homology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 article

Aspergillus flavus genomics as a tool for studying the mechanism of aflatoxin formation

FOOD ADDITIVES AND CONTAMINANTS PART A-CHEMISTRY ANALYSIS CONTROL EXPOSURE & RISK ASSESSMENT, Vol. 25, pp. 1152โ€“1157.

By: J. Yuโ€‰*, G. Payne n, W. Nierman*, M. Machida*, J. Bennett*, B. Campbell*, J. Robens*, D. Bhatnagarโ€‰*, R. Dean nโ€‰, T. Clevelandโ€‰*

co-author countries: Japan ๐Ÿ‡ฏ๐Ÿ‡ต United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: aflatoxins; mycotoxins; toxigenic fungi; Aspergillus; genomics; expressed Sequence tags; microarrays; gene profiling
MeSH headings : Aflatoxins / biosynthesis; Aspergillus flavus / genetics; Aspergillus flavus / metabolism; Aspergillus oryzae / genetics; Gene Expression Profiling / methods; Genes, Fungal; Genome, Fungal; Genomics / methods; Genomics / trends; Multigene Family; Oligonucleotide Array Sequence Analysis / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Expression of a harpin-encoding gene in rice confers durable nonspecific resistance to Magnaporthe grisea

PLANT BIOTECHNOLOGY JOURNAL, 6(1), 73โ€“81.

By: M. Shaoโ€‰*, J. Wangโ€‰*, R. Dean nโ€‰, Y. Linโ€‰*, X. Gaoโ€‰* & S. Hu nโ€‰

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: appressorium; defence-related genes; durable nonspecific resistance; hrf1 gene; Magnaporthe grisea; rice
MeSH headings : Bacterial Outer Membrane Proteins / genetics; Bacterial Outer Membrane Proteins / metabolism; Gene Expression; Host-Pathogen Interactions; Magnaporthe / immunology; Magnaporthe / physiology; Oryza / genetics; Oryza / immunology; Oryza / microbiology; Plant Diseases; Plant Leaves / metabolism; Silicon / metabolism; Xanthomonas / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

The effect of temperature on Natural Antisense Transcript (NAT) expression in Aspergillus flavus

Current Genetics, 54(5), 241โ€“269.

By: C. Smith*, D. Robertson n, B. Yatesโ€‰*, D. Nielsen nโ€‰, D. Brown n, R. Dean nโ€‰, G. Payne n

co-author countries: United Kingdom of Great Britain and Northern Ireland ๐Ÿ‡ฌ๐Ÿ‡ง United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Aspergillus flavus; Natural antisense transcripts (NATs); Temperature; Gene expression
MeSH headings : Aspergillus flavus / genetics; Aspergillus flavus / metabolism; Expressed Sequence Tags; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Regulation, Fungal; Genome, Fungal; RNA Precursors / metabolism; RNA, Antisense / metabolism; Temperature; Transcription, Genetic / genetics
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2008 review

Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae

[Review of ]. GENOME BIOLOGY, 9(5).

By: Y. Oh n, N. Donofrio n, H. Pan n, S. Coughlan*, D. Brown n, S. Meng n, T. Mitchell n, R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Cell Wall / chemistry; Cell Wall / metabolism; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Gene Expression Regulation, Fungal; Lipid Metabolism; Magnaporthe / cytology; Magnaporthe / genetics; Magnaporthe / physiology; Signal Transduction; Spores, Fungal / cytology; Spores, Fungal / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

A systematic analysis of T-DNA insertion events in Magnaporthe oryzae

FUNGAL GENETICS AND BIOLOGY, 44(10), 1050โ€“1064.

By: Y. Mengโ€‰*, G. Patelโ€‰*, M. Heist*, M. Betts*, S. Tucker*, N. Galadima*, N. Donofrio n, D. Brown n ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: agrobacterium-mediated transformation; insertional mutagenesis; inverse PCR
MeSH headings : 3' Flanking Region; 5' Flanking Region; Agrobacterium tumefaciens / genetics; Chromosomes, Fungal; DNA, Bacterial / analysis; DNA, Bacterial / genetics; Genome, Fungal; Magnaporthe / genetics; Mutagenesis, Insertional; Repetitive Sequences, Nucleic Acid; Transformation, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Challenges in quantification of ligninolytic enzymes from Phanerochaete chrysosporium cultivation for pretreatment of cotton stalks

Transactions of the ASABE, 50(6), 2347โ€“2354.

By: J. Shi, R. Sharma-Shivappa*, M. Chinn*โ€‰, R. Dean*โ€‰ & R. Shivappa*

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2007 journal article

Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae

FUNGAL GENETICS AND BIOLOGY, 44(10), 1035โ€“1049.

By: M. Betts*, S. Tucker*, N. Galadima*, Y. Mengโ€‰*, G. Patelโ€‰*, L. Liโ€‰*, N. Donofrio n, A. Floyd n ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Magnaporthe oryzae; Insertional mutagenesis; Agrobacterium tumefaciens-mediated transformation; CaCl2/PEG-mediated transformation; pathogenicity
MeSH headings : 3' Flanking Region; 5' Flanking Region; Agrobacterium tumefaciens / genetics; Magnaporthe / genetics; Mutagenesis, Insertional / methods; Phenotype; Protoplasts; Transformation, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Expressed sequence tags from Phytophthora sojae reveal genes specific to development and infection

MOLECULAR PLANT-MICROBE INTERACTIONS, 20(7), 781โ€“793.

By: T. Torto-Alalibo, S. Tripathy, B. Smith, F. Arredondo, L. Zhou, H. Li*, M. Chibucos, D. Qutob ...

author keywords: effectors
MeSH headings : Cluster Analysis; Expressed Sequence Tags; Gene Expression Profiling; Gene Library; Genes, Fungal; Molecular Sequence Data; Phytophthora / genetics; Phytophthora / growth & development; Sequence Analysis, DNA; Soybeans / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 review

From genes to genomes: A new paradigm for studying fungal pathogenesis in magnaporthe oryzae

[Review of ]. Fungal genomics, 57, 175โ€“218.

By: J. Xu, X. Zhao & R. Deanโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2007 article

Fungal gene clusters

Dean, R. A. (2007, January). NATURE BIOTECHNOLOGY, Vol. 25, pp. 67โ€“67.

By: R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Gene Expression Regulation, Fungal; Genes, Fungal / genetics; Genome, Fungal / genetics; Genomics; Multigene Family / genetics; Multigene Family / physiology; Ustilago / genetics; Ustilago / growth & development; Ustilago / pathogenicity; Virulence / genetics; Zea mays / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice

PLANT PHYSIOLOGY, 144(1), 524โ€“533.

By: M. Gowdaโ€‰ n, R. Venu n, H. Li n, C. Jantasuriyaratโ€‰ n, S. Chen n, M. Bellizzi n, V. Pampanwar n, H. Kimโ€‰ n ...

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Base Sequence; Expressed Sequence Tags; Gene Expression Profiling; Gene Library; Genetic Variation; Immunity, Innate; Magnaporthe / physiology; Molecular Sequence Data; Oryza / genetics; Oryza / metabolism; Oryza / microbiology; Plant Diseases / genetics; Plant Diseases / microbiology; RNA, Antisense / metabolism; RNA, Messenger / metabolism; Sequence Analysis, RNA
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

The Magnaporthe grisea snodprot1 homolog, MSPI, is required for virulence

FEMS MICROBIOLOGY LETTERS, 273(2), 157โ€“165.

By: J. Jeong n, T. Mitchell n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: rice blast; hydrophobin; pathogenicity; rice; infection
MeSH headings : Blotting, Western; Fungal Proteins / chemistry; Fungal Proteins / genetics; Fungal Proteins / physiology; Gene Deletion; Hordeum / microbiology; Magnaporthe / genetics; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Molecular Sequence Data; Mutation; Recombinant Fusion Proteins / physiology; Sequence Alignment; Sequence Analysis, Protein; Virulence / genetics; Virulence Factors / chemistry; Virulence Factors / genetics; Virulence Factors / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

The evolutionary history of Cytochrome P450 genes in four filamentous Ascomycetes

BMC EVOLUTIONARY BIOLOGY, 7.

By: J. Deng n, I. Carbone nโ€‰ & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Amino Acid Motifs; Amino Acid Sequence; Ascomycota / enzymology; Ascomycota / genetics; Aspergillus nidulans / enzymology; Aspergillus nidulans / genetics; Conserved Sequence; Cytochrome P-450 Enzyme System / genetics; Evolution, Molecular; Exons; Fusarium / enzymology; Fusarium / genetics; Gene Duplication; Genes, Fungal; Introns; Magnaporthe / enzymology; Magnaporthe / genetics; Multigene Family; Neurospora crassa / enzymology; Neurospora crassa / genetics; Phylogeny
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Trranscript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion

TREE PHYSIOLOGY, 27(10), 1441โ€“1458.

By: A. Adomas*, G. Heller*, G. Liโ€‰*, A. Olsonโ€‰*, T. Chu*, J. Osborne n, D. Craig n, L. Van Zyl n ...

co-author countries: Sweden ๐Ÿ‡ธ๐Ÿ‡ช United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: antimicrobial peptide; microarray; peroxidase; phenylopropanoid pathway; pine; plant defence
MeSH headings : Fungi / physiology; Gene Expression Profiling; Gene Expression Regulation, Plant; Oligonucleotide Array Sequence Analysis; Pinus sylvestris / metabolism; Plant Diseases / microbiology; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Roots / metabolism; Plant Roots / microbiology; Plant Roots / ultrastructure; Seedlings
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 article

What can comparative genomics tell us about species concepts in the genus Aspergillus?

STUDIES IN MYCOLOGY, pp. 11โ€“17.

By: A. Rokas, G. Payne*, N. Fedorova, S. Baker, M. Machida, J. Yu, D. Georgianna*, R. Dean*โ€‰ ...

author keywords: comparative genomics; genetic diversity; genome sequences; identification of species boundaries
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

Construction of a watermelon BAC library and identification of SSRs anchored to melon or Arabidopsis genomes

THEORETICAL AND APPLIED GENETICS, 112(8), 1553โ€“1562.

By: T. Joobeur n, G. Gusmini*, X. Zhang*, A. Levi*, Y. Xuโ€‰*, T. Wehner nโ€‰, M. Oliver, R. Dean nโ€‰

co-author countries: China ๐Ÿ‡จ๐Ÿ‡ณ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Alleles; Arabidopsis / genetics; Chromosomes, Artificial, Bacterial; Citrullus / genetics; DNA, Plant / genetics; Gene Library; Genetic Markers; Genome, Plant; Hybridization, Genetic; Polymorphism, Genetic; Repetitive Sequences, Nucleic Acid / genetics; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

BMC Genomics, 7.

By: M. Gowda, R. Venu, M. Raghupathy, K. Nobuta, H. Li, R. Wing, E. Stahlberg, S. Couglan ...

Source: NC State University Libraries
Added: August 6, 2018

2006 journal article

Global gene expression during nitrogen starvation in the rice blast fungus, Magnaporthe grisea

FUNGAL GENETICS AND BIOLOGY, 43(9), 605โ€“617.

By: N. Donofrio*, Y. Oh, R. Lundy, H. Pan*, D. Brown*, J. Jeong*, S. Coughlan, T. Mitchell*, R. Dean*โ€‰

author keywords: nitrogen limitation; GATA transcription factors; metabolism; SPM1; protease; targeted gene disruption; pathogenicity
MeSH headings : Amino Acids / metabolism; Binding Sites; Biological Transport / genetics; DNA-Binding Proteins / genetics; GATA Transcription Factors / metabolism; Gene Expression; Gene Expression Regulation, Fungal; Genes, Fungal; Magnaporthe / genetics; Magnaporthe / pathogenicity; Nitrogen / metabolism; Oligonucleotide Array Sequence Analysis; Oryza / metabolism; Oryza / microbiology; Plant Diseases / microbiology; Promoter Regions, Genetic; Serine Endopeptidases / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions

MOLECULAR PLANT-MICROBE INTERACTIONS, 19(10), 1055โ€“1061.

By: C. Soderlund, K. Haller, V. Pampanwar, D. Ebbole, M. Farman, M. Orbach, G. Wang, R. Wing ...

author keywords: host-pathogen
MeSH headings : Computational Biology; DNA, Complementary / chemistry; Databases, Genetic; Expressed Sequence Tags; Gene Expression Profiling; Genome, Fungal; Genome, Plant; Internet; Magnaporthe / genetics; Magnaporthe / physiology; Mutation; Oligonucleotide Array Sequence Analysis; Oryza / genetics; Oryza / microbiology; Phenotype
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 review

Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae

[Review of ]. NUCLEIC ACIDS RESEARCH, 34(17), 4685โ€“4701.

By: C. Rehmeyer*, W. Liโ€‰*, M. Kusaba*, Y. Kim*, D. Brown n, C. Staben*, R. Dean nโ€‰, M. Farmanโ€‰*

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Adenosine Triphosphatases / genetics; Base Sequence; Chromosomes, Fungal / chemistry; DNA Helicases / genetics; DNA Transposable Elements; Fungal Proteins / genetics; Gene Duplication; Genes, Fungal; Magnaporthe / genetics; Magnaporthe / metabolism; Molecular Sequence Data; Oryza / microbiology; RecQ Helicases; Sequence Analysis, DNA; Telomere / chemistry; Terminology as Topic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae

Genome Biology, 7(2).

By: M. Thon, H. Pan, S. Diener, J. Papalas, A. Taro, T. Mitchell, R. Deanโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2006 article

Whole genome comparison of Aspergillus flavus and A-oryzae

Payne, G. A., Nierman, W. C., Wortman, J. R., Pritchard, B. L., Brown, D., Dean, R. A., โ€ฆ Yu, J. (2006, September). MEDICAL MYCOLOGY, Vol. 44, pp. S9โ€“S11.

By: G. Payne n, W. Nierman, J. Wortman, B. Pritchard n, D. Brown n, R. Dean nโ€‰, D. Bhatnagar, T. Cleveland, M. Machida, J. Yu

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: aflatoxin; secondary metabolism; koji moulds
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Alkahest NuclearBLAST: a user-friendly BLAST management and analysis system

BMC Bioinformatics, 6.

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Genetic variation among Rhizoctonia solani isolates from warm-season turfgrasses

International Turfgrass Society Research Journal, 10, 230.

By: J. Li, S. Martin, S. Jeffers, R. Deanโ€‰ & J. Camberato

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction

PLANT PHYSIOLOGY, 138(1), 105โ€“115.

By: C. Jantasuriyaratโ€‰ n, M. Gowdaโ€‰ n, K. Haller n, J. Hatfield n, G. Luโ€‰ n, E. Stahlberg n, B. Zhouโ€‰ n, H. Li n ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Disease Susceptibility; Expressed Sequence Tags; Fungal Proteins / genetics; Gene Library; Genes, Plant; Immunity, Innate; Magnaporthe / genetics; Magnaporthe / pathogenicity; Molecular Sequence Data; Oryza / genetics; Oryza / microbiology; Plant Diseases / genetics; Plant Leaves / microbiology; Plant Proteins / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea

Genome Biology, 6(3).

By: R. Kulkarni, M. Thon, H. Pan & R. Deanโ€‰

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

PACLIMS: A component LIM system for high-throughput functional genomic analysis

BMC Bioinformatics, 6.

By: N. Donofrio, R. Rajagopalon, D. Brown, S. Diener, D. Windham, S. Nolin, A. Floyd, T. Mitchell ...

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

The genome sequence of the rice blast fungus Magnaporthe grisea

NATURE, 434(7036), 980โ€“986.

By: R. Dean nโ€‰, N. Talbotโ€‰*, D. Ebboleโ€‰*, M. Farmanโ€‰*, T. Mitchell n, M. Orbachโ€‰*, M. Thonโ€‰*, R. Kulkarni n ...

co-author countries: France ๐Ÿ‡ซ๐Ÿ‡ท United Kingdom of Great Britain and Northern Ireland ๐Ÿ‡ฌ๐Ÿ‡ง Korea (Republic of) ๐Ÿ‡ฐ๐Ÿ‡ท United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Fungal Proteins / genetics; Fungal Proteins / metabolism; Genes, Fungal / genetics; Genome, Fungal; Guanosine Diphosphate / metabolism; Guanosine Triphosphate / metabolism; Magnaporthe / classification; Magnaporthe / genetics; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Oryza / microbiology; Plant Diseases / microbiology; Point Mutation / genetics; Proteome / genetics; Proteome / metabolism; Receptors, G-Protein-Coupled / genetics; Repetitive Sequences, Nucleic Acid / genetics; Saccharomyces cerevisiae / metabolism; Signal Transduction; Virulence / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 chapter

Trust-Based Secure Workflow Path Construction

In B. Benatallah, F. Casati, & P. Traverso (Eds.), Service-Oriented Computing โ€“ ICSOC 2007 (pp. 382โ€“395).

By: M. Altunay n, D. Brown n, G. Byrd nโ€‰ & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ

Contributors: M. Altunay n, D. Brown n, G. Byrd nโ€‰ & R. Dean nโ€‰

Ed(s): B. Benatallah, F. Casati & P. Traverso

Sources: NC State University Libraries, ORCID, Crossref
Added: August 6, 2018

2004 journal article

BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea

FUNGAL GENETICS AND BIOLOGY, 41(7), 657โ€“666.

By: M. Thon n, S. Martin n, S. Goff*, R. Wingโ€‰* & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: transposon; transposable element; rice blast; Magnaporthe grisea; Pyricularia grisea; BAC library; physical map
MeSH headings : Chromosomes, Artificial, Bacterial; Chromosomes, Fungal / genetics; DNA Transposable Elements; DNA, Fungal / genetics; Gene Library; Genome, Fungal; Magnaporthe / genetics; Physical Chromosome Mapping; Point Mutation / genetics; Recombination, Genetic; Repetitive Sequences, Nucleic Acid; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

Characterization of the protein processing and secretion pathways in a comprehensive set of expressed sequence tags from Trichoderma reesei

FEMS MICROBIOLOGY LETTERS, 230(2), 275โ€“282.

By: S. Diener n, N. Dunn-Coleman, P. Foreman, T. Houfek n, P. Teunissen, P. Solingen, L. Dankmeyer, T. Mitchell n, M. Ward, R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: secretion; protein processing; Trichoderma reesei; expressed sequence tag
MeSH headings : Computational Biology; Expressed Sequence Tags; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Library; Protein Processing, Post-Translational; Protein Transport; Sequence Analysis, DNA; Trichoderma / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 article

Characterization of the protein processing and secretion pathways in a comprehensive set of expressed sequence tags from Trichoderma reesei (vol 230, pg 275, 2004)

FEMS Microbiology Letters, Vol. 235, p. 209.

By: S. Diener n, N. Dunn-Coleman, P. Foreman, T. Houfek n, P. Teunissen, P. Solingen, L. Dankmeyer, T. Mitchell n, M. Ward, R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2004 journal article

Cloning, sequencing and functional analysis of Magnaporthe grisea MVP1 gene, a hex-1 homolog encoding a putative 'woronin body' protein

FEMS Microbiology Letters, 230(1), 85โ€“90.

By: F. Asiegbu, W. Choi, J. Jeong & R. Deanโ€‰

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2004 journal article

Cloning, sequencing and functional analysis of Magnaporthe grisea MVP1 gene, a hex-1 homolog encoding a putative รขย€ย˜woronin bodyรขย€ย™ protein

FEMS Microbiology Letters, 230(1), 85โ€“90.

By: F. Asiegbuโ€‰ n, W. Choiโ€‰ n, J. Jeong n & R. Dean nโ€‰

co-author countries: Sweden ๐Ÿ‡ธ๐Ÿ‡ช United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: appressorium; cDNA; gene disruption; Northern blotting; rice blast fungus
MeSH headings : Cloning, Molecular; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Deletion; Gene Expression Regulation, Fungal; Magnaporthe / genetics; Magnaporthe / growth & development; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Molecular Sequence Data; Oryza / microbiology; Plant Diseases / microbiology; Recombination, Genetic; Sequence Analysis, DNA
Sources: Crossref, ORCID
Added: August 28, 2020

2004 journal article

Gene discovery and gene expression in the rice blast fungus, Magnaporthe grisea: Analysis of expressed sequence tags

MOLECULAR PLANT-MICROBE INTERACTIONS, 17(12), 1337โ€“1347.

By: D. Ebbole, Y. Jin, M. Thon*, H. Pan*, E. Bhattarai, T. Thomas, R. Dean*โ€‰

author keywords: plant pathogen
MeSH headings : Expressed Sequence Tags; Gene Expression Profiling; Gene Library; Genome, Fungal; Magnaporthe / genetics; Multigene Family; Oryza / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

Identification of proteins that interact with two regulators of appressorium development, adenylate cyclase and cAMP-dependent protein kinase A, in the rice blast fungus Magnaporthe grisea

Molecular Genetics and Genomics, 270(6), 497โ€“508.

By: R. Kulkarni n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Adenylyl Cyclases / metabolism; Base Sequence; Cloning, Molecular; Cyclic AMP / physiology; Cyclic AMP-Dependent Protein Kinases / metabolism; DNA Primers; DNA, Complementary; Gene Library; Magnaporthe / enzymology; Magnaporthe / genetics; Magnaporthe / growth & development; Oryza / microbiology; Plant Diseases / microbiology; Plant Growth Regulators / pharmacology; Plant Proteins / metabolism; Restriction Mapping; Signal Transduction
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2004 journal article

Insight into Trichoderma reesei's genome content, organization and evolution revealed through BAC library characterization

FUNGAL GENETICS AND BIOLOGY, 41(12), 1077โ€“1087.

By: S. Diener n, M. Chellappan n, T. Mitchell n, N. Dunn-Coleman, M. Ward & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Trichoderma reesei; bacterial artificial chromosome (BAC); physical map; genome organization; secretion; biomass degradation; repetitive element
MeSH headings : Chromosome Mapping; Chromosomes, Artificial, Bacterial; Contig Mapping; DNA Fingerprinting; DNA Transposable Elements / genetics; DNA, Fungal / chemistry; DNA, Fungal / genetics; DNA, Fungal / isolation & purification; Fungal Proteins / genetics; Fungal Proteins / physiology; Genome, Fungal; Genomic Library; Molecular Sequence Data; Nucleic Acid Hybridization; Podospora / genetics; Polymorphism, Restriction Fragment Length; Sequence Analysis, DNA; Sequence Homology; Trichoderma / enzymology; Trichoderma / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

Protocol for DNA extraction from watermelon leaves for SSR marker studies

Report (Cucurbit Genetics Cooperative), (27), 25.

By: G. Gusmini, T. Wehnerโ€‰, T. Joobeur, R. Deanโ€‰ & A. Levi

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Robust-LongSAGE (RL-SAGE): A substantially improved LongSAGE method for gene discovery and transcriptome analysis

PLANT PHYSIOLOGY, 134(3), 890โ€“897.

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Base Sequence; Cloning, Molecular; DNA, Plant / genetics; Gene Expression Profiling / methods; Genes, Plant; Genome, Plant; Genomics / methods; Plant Diseases / genetics; RNA, Messenger / genetics; RNA, Plant / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

The fusarium wilt resistance locus Fom-2 of melon contains a single resistance gene with complex features

PLANT JOURNAL, 39(3), 283โ€“297.

By: T. Joobeur n, J. Kingโ€‰*, S. Nolin n, C. Thomas* & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Fom-2; melon; complex R locus; fine mapping; BAC end sequence; R gene evolution
MeSH headings : Alleles; Amino Acid Sequence; Base Sequence; Chromosome Mapping; Cucumis melo / genetics; Cucumis melo / microbiology; DNA Primers / genetics; DNA, Plant / genetics; Evolution, Molecular; Fusarium / pathogenicity; Gene Conversion; Genes, Plant; Molecular Sequence Data; Plant Diseases / genetics; Plant Diseases / microbiology; Plant Proteins / chemistry; Plant Proteins / genetics; Polymorphism, Genetic; Recombination, Genetic; Selection, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

AFLP analysis of a worldwide collection of Didymella bryoniae

MYCOLOGICAL RESEARCH, 107, 297โ€“304.

By: R. Kothera*, A. Keinathโ€‰*, R. Dean nโ€‰ & M. Farnham*

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Ascomycota / classification; Ascomycota / genetics; Ascomycota / isolation & purification; Ascomycota / pathogenicity; Citrullus / microbiology; Cucumis / microbiology; DNA Primers; Genes, Fungal; Polymerase Chain Reaction; Polymorphism, Genetic; Polymorphism, Restriction Fragment Length
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

An eight-cysteine-containing CFEM domain unique to a group of fungal membrane proteins

TRENDS IN BIOCHEMICAL SCIENCES, 28(3), 118โ€“121.

By: R. Kulkarni n, H. Kelkar* & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Amino Acid Sequence; Cysteine / chemistry; Cysteine / genetics; Fungal Proteins / chemistry; Fungal Proteins / genetics; Membrane Proteins / chemistry; Membrane Proteins / genetics; Molecular Sequence Data; Plant Proteins / chemistry; Plant Proteins / genetics; Plant Proteins / metabolism; Protein Structure, Tertiary; Sequence Alignment
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

In-depth view of structure, activity, and evolution of rice chromosome 10

Science, 300(5625), 1566โ€“1569.

Ralph Dean

Source: NC State University Libraries
Added: August 6, 2018

2003 journal article

Isolation of a novel antimicrobial peptide gene (Sp-AMP) homologue from Pinus sylvestris (Scots pine) following infection with the root rot fungus Heterobasidion annosum

FEMS MICROBIOLOGY LETTERS, 228(1), 27โ€“31.

By: F. Asiegbu n, W. Choi n, G. Liโ€‰*, J. Nahalkovaโ€‰* & R. Dean nโ€‰

co-author countries: Sweden ๐Ÿ‡ธ๐Ÿ‡ช United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: subtraction hybridization; Heterobasidion annosum; expressed sequence tag; Pinus sylvestris
MeSH headings : Antimicrobial Cationic Peptides; Base Sequence; Basidiomycota; Molecular Sequence Data; Mycoses / microbiology; Pinus sylvestris / genetics; Pinus sylvestris / microbiology; Plant Diseases / genetics; Plant Diseases / microbiology; Plant Proteins / genetics; Plant Roots / microbiology; Plant Roots / physiology; Sequence Homology, Amino Acid
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Large scale parallel analysis of gene expression during infection-related morphogenesis of Magnaporthe grisea

MOLECULAR PLANT PATHOLOGY, 4(5), 337โ€“346.

By: Y. Takanoโ€‰*, W. Choiโ€‰ n, T. Mitchell n, T. Okuno* & R. Dean nโ€‰

co-author countries: Japan ๐Ÿ‡ฏ๐Ÿ‡ต United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

PI3K signaling is required for prostaglandin-induced mucosal recovery in ischemia-injured porcine ileum

American Journal of Physiology-Gastrointestinal and Liver Physiology, 284(1), G46โ€“G56.

By: D. Little*, R. Dean, K. Young*, S. McKane n, L. Martin n, S. Jones*โ€‰, A. Blikslager*โ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: phosphatidylinositol 3-kinase; tight junction; occludin; zonula occludens-1
MeSH headings : 16,16-Dimethylprostaglandin E2 / pharmacology; Animals; Anti-Ulcer Agents / pharmacology; Electric Impedance; Epoprostenol / analogs & derivatives; Epoprostenol / pharmacology; Female; Humans; Ileum / metabolism; Intestinal Mucosa / enzymology; Intestinal Mucosa / ultrastructure; Ischemia / metabolism; Male; Membrane Proteins / metabolism; Microscopy, Electron; Occludin; Osmotic Pressure; Phosphatidylinositol 3-Kinases / metabolism; Phosphoproteins / metabolism; Platelet Aggregation Inhibitors / pharmacology; Recovery of Function / physiology; Signal Transduction / drug effects; Signal Transduction / physiology; Swine; Tight Junctions / enzymology; Urea / pharmacology; Zonula Occludens-1 Protein
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2003 review

The rice blast pathosystem as a case study for the development of new tools and raw materials for genome analysis of fungal plant pathogens

[Review of ]. NEW PHYTOLOGIST, 159(1), 53โ€“61.

By: T. Mitchell n, M. Thonโ€‰ n, J. Jeong n, D. Brown n, J. Deng n & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Magnaporthe grisea; rice blast; genomic tools; BAC; physical map; synteny; whole genome comparison; fungi
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei

JOURNAL OF BIOLOGICAL CHEMISTRY, 278(34), 31988โ€“31997.

By: P. Foreman, D. Brown n, L. Dankmeyer, R. Dean nโ€‰, S. Diener n, N. Dunn-Coleman, F. Goedegebuur, T. Houfek n ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Biomass; DNA, Complementary; Enzymes / genetics; Enzymes / metabolism; Expressed Sequence Tags; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Fungal; Hydrolysis; Molecular Sequence Data; Transcription, Genetic; Trichoderma / enzymology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2002 journal article

Cloning of disease-resistance homologues in end sequences of BAC clones linked to Fom-2, a gene conferring resistance to Fusarium wilt in melon (Cucumis melo L.)

GENOME, 45(3), 473โ€“480.

By: Y. Wangโ€‰*, W. Choi, C. Thomas & R. Dean*โ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: BAC end sequencing; Cucumis melo L.; Fusarium wilt; R gene
MeSH headings : Amino Acid Sequence; Chromosomes, Artificial, Bacterial; Contig Mapping; Cucumis melo / genetics; Cucumis melo / microbiology; Fusarium; Gene Library; Genes, Plant; Genetic Markers; Molecular Sequence Data; Plant Diseases / genetics; Sequence Alignment
Sources: Web Of Science, ORCID
Added: August 6, 2018

2002 journal article

Development of PCR-ELISA for detection and differentiation of Didymella bryoniae from related Phoma species

PLANT DISEASE, 86(7), 710โ€“716.

By: B. Somai*, A. Keinathโ€‰* & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Sources: Web Of Science, ORCID
Added: August 6, 2018

2002 journal article

Internal transcribed spacer regions 1 and 2 and random amplified polymorphic DNA analysis of Didymella bryoniae and related Phoma species isolated from cucurbits

PHYTOPATHOLOGY, 92(9), 997โ€“1004.

By: B. Somai, R. Dean*โ€‰, M. Farnham, T. Zitter & A. Keinath

Sources: Web Of Science, ORCID
Added: August 6, 2018

2002 journal article

MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea

NUCLEIC ACIDS RESEARCH, 30(1), 121โ€“124.

By: S. Martin n, B. Blackmon*, R. Rajagopalan n, T. Houfek n, R. Sceeles n, S. Denn n, T. Mitchell n, D. Brown n, R. Wingโ€‰*, R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Base Sequence; Chromosome Mapping; Chromosomes, Artificial, Bacterial; Chromosomes, Fungal; Database Management Systems; Databases, Genetic; Forecasting; Genetic Markers; Genome, Fungal; Genomic Library; Information Storage and Retrieval; Internet; Magnaporthe / genetics; Oryza / microbiology; Plant Diseases
Sources: Web Of Science, ORCID
Added: August 6, 2018

2002 journal article

Two novel fungal virulence genes specifically expressed in appressoria of the rice blast fungus

PLANT CELL, 14(9), 2107โ€“2119.

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Amino Acid Sequence; Cytoplasm / genetics; Cytoplasm / metabolism; Fungal Proteins / genetics; Fungal Proteins / metabolism; Fungal Structures / genetics; Fungal Structures / growth & development; Fungal Structures / metabolism; Gene Expression Regulation, Developmental; Gene Expression Regulation, Fungal / genetics; Hordeum / microbiology; Magnaporthe / genetics; Magnaporthe / growth & development; Magnaporthe / pathogenicity; Mitogen-Activated Protein Kinases / genetics; Mitogen-Activated Protein Kinases / metabolism; Molecular Sequence Data; Mutation; Oryza / microbiology; Phenotype; Phylogeny; Sequence Homology, Amino Acid; Virulence / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2001 journal article

A genetic linkage map for watermelon based on randomly amplified polymorphic DNA markers

JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE, 126(6), 730โ€“737.

By: A. Levi, C. Thomas, X. Zhang, T. Joobeur, R. Dean*โ€‰, T. Wehner*โ€‰, B. Carle

author keywords: Citrullus lanatus; genetic mapping; SCAR; fusarium wilt; RAPD
Sources: Web Of Science, ORCID
Added: August 6, 2018

2001 journal article

Global analysis of protein activities using proteome chips

SCIENCE, 293(5537), 2101โ€“2105.

By: H. Zhuโ€‰*, M. Bilgin*, R. Bangham*, D. Hallโ€‰*, A. Casamayorโ€‰*, P. Bertone*, N. Lan*, R. Jansen* ...

co-author countries: France ๐Ÿ‡ซ๐Ÿ‡ท United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Amino Acid Motifs; Amino Acid Sequence; Calmodulin / metabolism; Calmodulin-Binding Proteins / metabolism; Cell Membrane / metabolism; Cloning, Molecular; Fungal Proteins / chemistry; Fungal Proteins / genetics; Fungal Proteins / metabolism; Glucose / metabolism; Liposomes / metabolism; Membrane Proteins / metabolism; Molecular Sequence Data; Open Reading Frames; Peptide Library; Phosphatidylcholines / metabolism; Phosphatidylinositols / metabolism; Phospholipids / metabolism; Protein Binding; Proteome; Recombinant Fusion Proteins / metabolism; Saccharomyces cerevisiae / genetics; Saccharomyces cerevisiae / metabolism; Signal Transduction; Streptavidin / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2001 journal article

Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2)

GENOME, 44(2), 154โ€“162.

By: M. Luo, Y. Wang, D. Frisch, T. Joobeur, R. Wing & R. Dean*โ€‰

author keywords: bacterial artificial chromosome (BAC) library; Fusarium wilt; melon; pCUGIBAC1; resistant gene
Sources: Web Of Science, ORCID
Added: August 6, 2018

2000 journal article

Genetic mapping of a fusarium wilt resistance gene (Fom-2) in melon (Cucumis melo L.)

MOLECULAR BREEDING, 6(4), 379โ€“389.

By: Y. Wangโ€‰*, C. Thomas* & R. Dean nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: AFLP; co-dominant markers; Cucumis melo; fusarium wilt; marker-assisted selection
Sources: Web Of Science, ORCID
Added: August 6, 2018

2000 journal article

Site-directed mutagenesis of the magB gene affects growth and development in Magnaporthe grisea

MOLECULAR PLANT-MICROBE INTERACTIONS, 13(11), 1214โ€“1227.

By: E. Fang & R. Dean*โ€‰

author keywords: rice blast; signal transduction
MeSH headings : Amino Acid Sequence; Cell Differentiation / genetics; Crosses, Genetic; Cyclic AMP / analysis; Fungal Proteins / genetics; GTP-Binding Protein alpha Subunits; Genes, Fungal; Heterotrimeric GTP-Binding Proteins / genetics; Magnaporthe / cytology; Magnaporthe / genetics; Magnaporthe / growth & development; Molecular Sequence Data; Mutagenesis, Site-Directed; Mutation; Oryza / microbiology; Phenotype; Plant Diseases / genetics; Plasmids; Transformation, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018

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