Works (19)

Updated: April 16th, 2024 05:02

2024 article

Complete genome sequence for the extremely thermophilic bacterium Anaerocellum danielii (DSM:8977)

Manesh, M. J. H., Bing, R. G., Willard, D. J., Adams, M. W. W., & Kelly, R. M. (2024, January 24). (K. M. Stedman, Ed.). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 1.

By: M. Manesh n, R. Bing n, D. Willard n, M. Adams* & R. Kelly n

Ed(s): K. Stedman

author keywords: Anaerocellum danielii; extreme thermophile; cellulose
TL;DR: The complete genome sequence of the extremely thermophilic bacterium Anaerocellum Anaerocellum danielii (DSM:8977) is reported here and is capable of lignocellulose degradation with potential applications in biomass degradation and production of chemicals and fuels from renewable feedstocks. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: February 12, 2024

2024 article

Complete genome sequence for the thermoacidophilic archaeon <i>Metallosphaera sedula</i> (DSM:5348)

Manesh, M. J. H., Bing, R. G., Willard, D. J., & Kelly, R. M. (2024, February 8). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 2.

By: M. Manesh n, R. Bing n, D. Willard n & R. Kelly n

author keywords: Metallosphaera sedula; thermoacidophile; archeaon
TL;DR: The complete genome sequence of the thermoacidophilic archaeon Metallosphaera sedula, originally isolated from a volcanic field in Italy, is reported here, and has applications in bioleaching of sulfide minerals. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: February 19, 2024

2023 article

Complete Genome Sequences of Caldicellulosiruptor acetigenus DSM 7040, Caldicellulosiruptor morganii DSM 8990 (RT8.B8), and Caldicellulosiruptor naganoensis DSM 8991 (NA10)

Bing, R. G. G., Willard, D. J. J., Manesh, M. J. H., Laemthong, T., Crosby, J. R. R., Adams, M. W. W., & Kelly, R. M. M. (2023, February 1). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 2.

TL;DR: The genome sequences of three extremely thermophilic, lignocellulolytic Caldicellulosiruptor species were closed, improving previously reported multiple-contig assemblies and enhancing bioinformatic analysis of the species. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: February 20, 2023

2023 journal article

Complete Genome Sequences of Two Thermophilic Indigenous Bacteria Isolated from Wheat Straw, Thermoclostridium stercorarium subsp. Strain RKWS1 and Thermoanaerobacter sp. Strain RKWS2

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 12(3).

TL;DR: Discovery of indigenous thermophiles in plant biomass suggests that high-temperature microorganisms are more ubiquitous than previously thought. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: April 17, 2023

2023 article

Complete genome sequence for the thermoacidophilic archaeon <i>Sulfuracidifex</i> (f<i>. Sulfolobus</i>) <i>metallicus</i> DSM 6482

Willard, D. J., Manesh, M. J. H., Bing, R. G., & Kelly, R. M. (2023, December 6). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 12.

By: D. Willard n, M. Manesh n, R. Bing n & R. Kelly n

author keywords: thermoacidophile; archaea; crenarchaea; genome
TL;DR: The complete genome sequence for the thermoacidophilic archaeon Sulfuracidifex (f. Sulfolobus) metallicus DSM 6482 is reported, which is a prolific metal and sulfur oxidizer and has application in metal bioleaching operations. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: December 18, 2023

2023 journal article

Fermentative conversion of unpretreated plant biomass: A thermophilic threshold for indigenous microbial growth

BIORESOURCE TECHNOLOGY, 367.

By: R. Bing n, M. Carey n, T. Laemthong n, D. Willard n, J. Crosby n, D. Sulis n, J. Wang n, M. Adams*, R. Kelly n

author keywords: Thermophiles; Lignocellulose; Consolidated bioprocessing; Caldicellulosiruptor bescii; Acetivibrio thermocellus
MeSH headings : Biomass; Fermentation; Lignin / chemistry; Clostridium thermocellum / metabolism; Plants / metabolism
TL;DR: Thermophiles that naturally grow at and above 75°C offer specific advantages as platform microorganisms for biomass conversion into fuels and chemicals that prevents native microbes from competing with engineered microbes and forming undesirable by-products. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: January 17, 2023

2023 article

Metabolic engineering of <i>Caldicellulosiruptor bescii</i> for 2,3-butanediol production from unpretreated lignocellulosic biomass and metabolic strategies for improving yields and titers

Tanwee, T. N. N., Lipscomb, G. L., Vailionis, J. L., Zhang, K., Bing, R. G., Hailey C. O'Quinn, … Adams, M. W. W. (2023, December 22). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 12.

By: T. Tanwee*, G. Lipscomb*, J. Vailionis*, K. Zhang*, R. Bing n, . Hailey C. O'Quinn*, F. Poole*, Y. Zhang*, R. Kelly n, M. Adams*

author keywords: Caldicellulosiruptor bescii; thermophile; 2,3-butanediol; acetoin; lignocellulose; metabolic flux; redox balance
Sources: Web Of Science, ORCID
Added: January 8, 2024

2023 journal article

Multiplex CRISPR editing of wood for sustainable fiber production

SCIENCE, 381(6654), 216-+.

By: D. Sulis n, X. Jiang n, C. Yang n, B. Marques n, M. Matthews n, Z. Miller n, K. Lan n, C. Cofre-Vega n ...

TL;DR: This work demonstrates that genome editing can be harnessed for breeding more efficient trees, which will provide timely opportunities for sustainable forestry and a more efficient bioeconomy. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID
Added: August 9, 2023

2023 article

Optimizing Strategies for Bio-Based Ethanol Production Using Genome-Scale Metabolic Modeling of the Hyperthermophilic Archaeon, Pyrococcus furiosus

Vailionis, J. L., Zhao, W., Zhang, K., Rodionov, D. A., Lipscomb, G. L., Tanwee, T. N. N., … Zhang, Y. (2023, June 8). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 6.

By: J. Vailionis*, W. Zhao*, K. Zhang*, D. Rodionov*, G. Lipscomb*, T. Tanwee*, . Hailey C. O'Quinn*, R. Bing n ...

author keywords: Pyrococcus furiosus; thermophiles; ethanol; genome-scale modeling; CO dehydrogenase; Archaea
TL;DR: The P. furiosus model is a powerful tool for understanding the relationship between generation of end products and redox/energy balance at a systems-level that will aid in the design of optimal engineering strategies for production of bio-based chemicals and fuels. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID
Added: June 19, 2023

2023 journal article

Role of cell-substrate association during plant biomass solubilization by the extreme thermophile Caldicellulosiruptor bescii

EXTREMOPHILES, 27(1).

By: T. Laemthong n, R. Bing n, J. Crosby n, M. Manesh n, M. Adams* & R. Kelly n

author keywords: Caldicellulosiruptor; Extreme thermophile; Lignocellulose; Binding proteins; Tapirins
MeSH headings : Cellulose / metabolism; Biomass; Saccharum / metabolism; Caldicellulosiruptor / metabolism; Clostridiales / metabolism; Plants; Archaea / metabolism
TL;DR: Results show that enhanced binding to the substrate, beyond the native capability, did not improve C. bescii solubilization of plant biomass, but in some cases may improve conversion of released lignocellulose carbohydrates to fermentation products. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: March 13, 2023

2023 journal article

Whither the genus Caldicellulosiruptor and the order Thermoanaerobacterales: phylogeny, taxonomy, ecology, and phenotype

FRONTIERS IN MICROBIOLOGY, 14.

By: R. Bing n, D. Willard n, J. Crosby n, M. Adams* & R. Kelly n

author keywords: Caldicellulosiruptor; Thermoanaerobacterales; bacteria; thermophiles; phylogeny; ecology; fermentative anaerobes
TL;DR: A main outcome of ANI/AAI analysis indicates the need to reclassify several previously designated species in the Thermoanaerobacterales and Caldicellulosiruptorales by condensing them into strains of single species. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 28, 2023

2022 journal article

<p>Plant biomass fermentation by the extreme thermophile Caldicellulosiruptor bescii for co-production of green hydrogen and acetone: Technoeconomic analysis</p>

BIORESOURCE TECHNOLOGY, 348.

By: R. Bing n, C. Straub n, D. Sulis n, J. Wang n, M. Adams* & R. Kelly n

author keywords: Acetone; Green hydrogen; Caldicellulosiruptor bescii; Extreme thermophiles; Technoeconomic analysis
MeSH headings : Acetone; Biomass; Caldicellulosiruptor; Fermentation; Hydrogen; Lignin / chemistry
Sources: Web Of Science, ORCID
Added: April 25, 2022

2022 article

Biochemical and Regulatory Analyses of Xylanolytic Regulons in Caldicellulosiruptor bescii Reveal Genus-Wide Features of Hemicellulose Utilization

Crosby, J. R., Laemthong, T., Bing, R. G., Zhang, K., Tanwee, T. N. N., Lipscomb, G. L., … Kelly, R. M. (2022, October 11). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 10.

author keywords: Caldicellulosiruptor; extreme thermophile; hemicellulose; xylanases; hemicellulase
MeSH headings : Regulon; Xylans; Cellulose / metabolism; Clostridiales / metabolism; Sugars
TL;DR: Overall, this work demonstrates the essential requirements for Caldicellulosiruptor to degrade various forms of xylan and the differences in species genomic inventories that are tuned for survival in unique biotopes with variable lignocellulosic substrates. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID
Added: October 24, 2022

2022 article

Engineering Caldicellulosiruptor bescii with Surface Layer Homology Domain-Linked Glycoside Hydrolases Improves Plant Biomass Solubilization

Laemthong, T., Bing, R. G., Crosby, J. R., Adams, M. W. W., & Kelly, R. M. (2022, September 28). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 9.

By: T. Laemthong n, R. Bing n, J. Crosby n, M. Adams* & R. Kelly n

author keywords: Caldicellulosiruptor; lignocellulose; glycoside hydrolase; surface layer homology (SLH) domain; plant biomass degradation; surface layer homology domain
MeSH headings : Glycoside Hydrolases / metabolism; Biomass; Xylans / metabolism; Xylose; Clostridiales / metabolism; Cellulose / metabolism; Plants / microbiology; Populus
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID
Added: October 11, 2022

2021 journal article

Genome-Scale Metabolic Model of Caldicellulosiruptor bescii Reveals Optimal Metabolic Engineering Strategies for Bio-based Chemical Production

MSystems, 6(3).

By: D. Rodionov*, I. Rodionova, V. Rodionov, A. Arzamasov, K. Zhang*, G. Rubinstein*, T. Tanwee*, R. Bing n ...

Ed(s): Z. Summers

author keywords: Caldicellulosiruptor bescii; lignocellulose degradation; carbohydrate; Caldicellulosiruptor; carbohydrate utilization; comparative genomics; metabolic reconstruction; plant biomass degradation; regulon
TL;DR: The C. bescii model provides a useful platform for investigating the potential redox controls that mediate the carbon and energy flows in metabolism and sets the stage for future design of engineering strategies aiming at optimizing the production of ethanol and other bio-based chemicals. (via Semantic Scholar)
Sources: Web Of Science, ORCID, Crossref
Added: July 14, 2021

2021 journal article

Thermophilic microbial deconstruction and conversion of natural and transgenic lignocellulose

Environmental Microbiology Reports, 13(3), 272–293.

By: R. Bing n, D. Sulis n, J. Wang n, M. Adams* & R. Kelly n

MeSH headings : Biomass; Lignin / chemistry; Plants / metabolism
TL;DR: Bioengineering plant properties to better fit the deconstruction capabilities of candidate consolidated bioprocessing microorganisms has potential to achieve the efficient lignocellulose deconstruction needed for industrial relevance. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, Crossref
Added: April 12, 2021

2020 journal article

Metabolically engineeredCaldicellulosiruptor besciias a platform for producing acetone and hydrogen from lignocellulose

BIOTECHNOLOGY AND BIOENGINEERING, 117(12), 3799–3808.

By: C. Straub n, R. Bing n, J. Otten n, L. Keller n, B. Zeldes n, M. Adams*, R. Kelly n

author keywords: acetone; Caldicellulosiruptor bescii; extreme thermophiles; metabolic engineering
MeSH headings : Acetone / metabolism; Biomass; Caldicellulosiruptor / genetics; Caldicellulosiruptor / metabolism; Hydrogen / metabolism; Lignin / metabolism; Metabolic Engineering
TL;DR: C. bescii can be engineered with balanced pathways in which renewable carbohydrate sources are converted to useful metabolites, primarily acetone and H2, without net production of its native fermentation products, acetate and lactate. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID
Added: September 7, 2020

2020 article

The biology and biotechnology of the genus Caldicellulosiruptor: recent developments in 'Caldi World'

Lee, L. L., Crosby, J. R., Rubinstein, G. M., Laemthong, T., Bing, R. G., Straub, C. T., … Kelly, R. M. (2020, January). EXTREMOPHILES, Vol. 24, pp. 1–15.

By: L. Lee n, J. Crosby n, G. Rubinstein*, T. Laemthong n, R. Bing n, C. Straub n, M. Adams*, R. Kelly n

author keywords: Caldicellulosiruptor; Extreme thermophiles; Lignocellulose
MeSH headings : Biomass; Biotechnology; Clostridiales; Glycoside Hydrolases; Hot Springs
TL;DR: Improvements in the amount of carbohydrate released and in the production of bio-based chemicals are required to successfully realize the biotechnological potential of Caldicellulosiruptor organisms. (via Semantic Scholar)
Sources: ORCID, Web Of Science
Added: February 27, 2020

2020 journal article

Use of the lignocellulose-degrading bacterium Caldicellulosiruptor bescii to assess recalcitrance and conversion of wild-type and transgenic poplar

BIOTECHNOLOGY FOR BIOFUELS, 13(1).

By: C. Straub n, R. Bing n, J. Wang n, V. Chiang n, M. Adams* & R. Kelly n

author keywords: Caldicellulosiruptor; Extreme thermophiles; Lignocellulose; Biofuel; Poplar
TL;DR: Utilizing C. bescii as a screening assay for recalcitrance, poplar lines with down-regulation of coumarate 3-hydroxylase 3 (C3H3) resulted in the highest degrees of solubilization and conversion by C. Bescii, suggesting that excellent digestibility can be achieved without compromising fitness of the tree. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: April 6, 2020

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