Ruian Ke

Principles of Effective and Robust Innate Immune Response to Viral Infections: A Multiplex Network Analysis

FRONTIERS IN IMMUNOLOGY, 10.

Within-host infectious disease models accommodating cellular coinfection, with an application to influenza

VIRUS EVOLUTION, 5(2).

Determinants of the efficacy of HIV latency-reversing agents and implications for drug and treatment design

JCI INSIGHT, 3(20).

Network analysis of virus-innate immune interaction within a host

2018 52nd Annual Conference on Information Sciences and Systems (CISS).

Variation in cell-associated unspliced HIV RNA on antiretroviral therapy is associated with the circadian regulator brain-and-muscle-ARNT-like-1

AIDS, 32(15), 2119–2128.

NS5A inhibitors unmask differences in functional replicase complex half-life between different hepatitis C virus strains

PLoS Pathogens, 13(6).

On the death rate of abortively infected cells: Estimation from simian-human immunodeficiency virus infection

Journal of Virology, 91(18).

Transcriptional reprogramming during effector-to-memory transition renders CD4(+) T cells permissive for latent HIV-1 Infection

Immunity, 47(4), 766-.

Modeling the effects of vorinostat in vivo reveals both transient and delayed HIV transcriptional activation and minimal killing of latently infected cells

PLoS Pathogens, 11(10).