Ruian Ke

Lavigne, G. M., Russell, H., Sherry, B., & Ke, R. (2021). Autocrine and paracrine interferon signalling as 'ring vaccination' and 'contact tracing' strategies to suppress virus infection in a host. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 288(1945). https://doi.org/10.1098/rspb.2020.3002

Huang, Y., Dai, H., & Ke, R. (2019). Principles of Effective and Robust Innate Immune Response to Viral Infections: A Multiplex Network Analysis. FRONTIERS IN IMMUNOLOGY, 10. https://doi.org/10.3389/fimmu.2019.01736

Koelle, K., Farrell, A. P., Brooke, C. B., & Ke, R. (2019). Within-host infectious disease models accommodating cellular coinfection, with an application to influenza. VIRUS EVOLUTION, 5(2). https://doi.org/10.1093/ve/vez018

Ke, R., Conway, J. M., Margolis, D. M., & Perelson, A. S. (2018). Determinants of the efficacy of HIV latency-reversing agents and implications for drug and treatment design. JCI INSIGHT, 3(20). https://doi.org/10.1172/jci.insight.123052

Huang, Y. F., Dai, M., Zhang, Z. H., & Ke, R. A. (2018). Network analysis of virus-innate immune interaction within a host. 2018 52nd Annual Conference on Information Sciences and Systems (CISS). https://doi.org/10.1109/ciss.2018.8362278

Chang, C. C., Naranbhai, V., Stern, J., Roche, M., Dantanarayana, A., Ke, R., … Lewin, S. R. (2018). Variation in cell-associated unspliced HIV RNA on antiretroviral therapy is associated with the circadian regulator brain-and-muscle-ARNT-like-1. AIDS, 32(15), 2119–2128. https://doi.org/10.1097/QAD.0000000000001937

Benzine, T., Brandt, R., Lovell, W. C., Yamane, D., Neddermann, P., De Francesco, R., … McGivern, D. R. (2017). NS5A inhibitors unmask differences in functional replicase complex half-life between different hepatitis C virus strains. PLOS PATHOGENS, 13(6). https://doi.org/10.1371/journal.ppat.1006343

Ke, R., Cong, M.-er, Li, D., Garcia-Lerma, J. G., & Perelson, A. S. (2017). On the Death Rate of Abortively Infected Cells: Estimation from Simian-Human Immunodeficiency Virus Infection. JOURNAL OF VIROLOGY, 91(18). https://doi.org/10.1128/jvi.00352-17

Shan, L., Deng, K., Gao, H., Xing, S., Capoferri, A. A., Durand, C. M., … Siliciano, R. F. (2017). Transcriptional Reprogramming during Effector-to-Memory Transition Renders CD4(+) T Cells Permissive for Latent HIV-1 Infection. IMMUNITY, 47(4), 766-+. https://doi.org/10.1016/j.immuni.2017.09.014

Ke, R., Lewin, S. R., Elliott, J. H., & Perelson, A. S. (2015). Modeling the Effects of Vorinostat In Vivo Reveals both Transient and Delayed HIV Transcriptional Activation and Minimal Killing of Latently Infected Cells. PLOS PATHOGENS, 11(10). https://doi.org/10.1371/journal.ppat.1005237